Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Forward (+)

25541576 .. 25542893

Gene Structure 1318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTTGGCTAATTATGGAAGAGGAGGAGGTTGACGGCATACCGGTAAATGAATTCGGGAGGCTTGAAATTGGTTTTGATTATGGATTTGACTTTACTGGCATAGTTACGCCTCCTGTGAGCACTGATTATGATGTCACCCTTTATGCTAAGCTTGGACTTTACTGCTACAATTTTCAAAAGGGGACAAACTTAAAGTTTGTGCGCTGGGAAAAGTATAATACGTCTACGGGCACTGCTTACATTGATAACTACATCACTTTGGAGGCAATGGATCCGTCCTGCAACTCTGTCTTCTCTTTTCAGACTGTGTTCAGTGCTGCTGGATGTTATAACCAAGATACTTATCATGTACAAGACTGGAGGGTCTTGGCCTGCAGACCAACATGTGGCAAGTCTGTGAATGAATATTTTGACCGGCATGAGGCAATGGATCCCTTCTACACAGGTAAAATGCCCAAATGGTTGTCTGATGACGCCTTGGCCTTTGACAACAAAAAGTATTACGTGGTGCAAGAATCAGACTTGCATGAGAATGACTGGCTGCTTGTATTCATGGAAATGGTATTCTTACAAGAAAAATCCTGTGTTTCTTCAAGTGATCACAAAGCTATCATAAGGAAAACCATGGATGGGGTACCAGAACACATGAGTCTTGAAATTGCTTTGGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0004832 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

225

Amino Acids

25.99

Weight (kDa)

4.63

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	152 - 200	7.4e-13	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AasI	GACNNNNNNGTC	1 cut(s)	365
Acc65I	GGTACC	1 cut(s)	637
AccB1I	GGYRCC	1 cut(s)	637
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	227
AclWI	GGATC	4 cut(s)	269, 282, 428, 441
AcsI	RAATTY	1 cut(s)	53
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	2 cut(s)	354, 639
AfiI	CCNNNNNNNGG	3 cut(s)	389, 424, 633
AflIII	ACRYGT	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	4 cut(s)	68, 179, 597, 659
AluBI	AGCT	2 cut(s)	154, 611
AluI	AGCT	2 cut(s)	154, 611
Alw21I	GWGCWC	1 cut(s)	125
AlwI	GGATC	4 cut(s)	269, 282, 428, 441
AoxI	GGCC	2 cut(s)	372, 483
ApeKI	GCWGC	2 cut(s)	320, 544
ApoI	RAATTY	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	130
BaeGI	GKGCMC	1 cut(s)	236
BamHI	GGATCC	2 cut(s)	274, 433
BanI	GGYRCC	1 cut(s)	637
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	2 cut(s)	307, 531
BccI	CCATC	1 cut(s)	626
BceAI	ACGGC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	2 cut(s)	321, 545
BlpI	GCTNAGC	1 cut(s)	150
BlsI	GCNGC	2 cut(s)	322, 546
BmiI	GGNNCC	3 cut(s)	276, 435, 639
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	382
Bpu1102I	GCTNAGC	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	480, 627
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 424, 633
Bse118I	RCCGGY	2 cut(s)	43, 417
Bse1I	ACTGG	3 cut(s)	103, 365, 545
Bse3DI	GCAATG	2 cut(s)	276, 435
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	480, 627
BseGI	GGATG	2 cut(s)	332, 637
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	3 cut(s)	389, 424, 633
BseMI	GCAATG	2 cut(s)	276, 435
BseNI	ACTGG	3 cut(s)	103, 365, 545
BseRI	GAGGAG	2 cut(s)	38, 41
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	307, 531
BseYI	CCCAGC	1 cut(s)	207
BshFI	GGCC	2 cut(s)	374, 485
BshNI	GGYRCC	1 cut(s)	637
BshTI	ACCGGT	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	44, 418
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	3 cut(s)	389, 424, 633
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	374, 485
Bsp1286I	GDGCHC	2 cut(s)	125, 236
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	3 cut(s)	274, 433, 601
Bsp1720I	GCTNAGC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	627
BspANI	GGCC	2 cut(s)	374, 485
BspLI	GGNNCC	3 cut(s)	276, 435, 639
BspMAI	CTGCAG	1 cut(s)	380
BspPI	GGATC	4 cut(s)	269, 282, 428, 441
BspT107I	GGYRCC	1 cut(s)	637
BsrDI	GCAATG	2 cut(s)	276, 435
BsrFI	RCCGGY	2 cut(s)	43, 417
BsrGI	TGTACA	1 cut(s)	352
BsrI	ACTGG	3 cut(s)	103, 365, 545
BssAI	RCCGGY	2 cut(s)	43, 417
BssECI	CCNNGG	2 cut(s)	480, 627
BssMI	GATC	3 cut(s)	274, 433, 601
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	2 cut(s)	480, 627
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	15
BstACI	GRCGYC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	352
BstBAI	YACGTR	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	376
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	627
BstF5I	GGATG	2 cut(s)	332, 637
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	3 cut(s)	277, 436, 604
BstMBI	GATC	3 cut(s)	274, 433, 601
BstNSI	RCATGY	1 cut(s)	390
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	307, 531
BstV2I	GAAGAC	1 cut(s)	286
BstX2I	RGATCY	2 cut(s)	274, 433
BstYI	RGATCY	2 cut(s)	274, 433
BsuRI	GGCC	2 cut(s)	374, 485
BtgI	CCRYGG	1 cut(s)	627
BtsCI	GGATG	2 cut(s)	332, 637
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	123, 234, 322
Cac8I	GCNNGC	1 cut(s)	376
CfoI	GCGC	1 cut(s)	207
Cfr10I	RCCGGY	2 cut(s)	43, 417
CseI	GACGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	353, 638
CspAI	ACCGGT	1 cut(s)	43
CviAII	CATG	7 cut(s)	350, 387, 422, 530, 556, 628, 649
CviJI	RGCY	8 cut(s)	5, 10, 64, 154, 374, 485, 544, 611
CviKI_1	RGCY	8 cut(s)	5, 10, 64, 154, 374, 485, 544, 611
CviQI	GTAC	2 cut(s)	353, 638
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	3 cut(s)	276, 435, 603
DpnII	GATC	3 cut(s)	274, 433, 601
DrdI	GACNNNNNNGTC	1 cut(s)	365
DseDI	GACNNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	480, 627
EcoRI	GAATTC	1 cut(s)	53
EcoT14I	CCWWGG	2 cut(s)	480, 627
ErhI	CCWWGG	2 cut(s)	480, 627
FaeI	CATG	7 cut(s)	353, 390, 425, 533, 559, 631, 652
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	7 cut(s)	349, 386, 421, 529, 555, 627, 648
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	321, 545
FokI	GGATG	2 cut(s)	339, 644
Fsp4HI	GCNGC	2 cut(s)	321, 545
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	2 cut(s)	321, 545
GsaI	CCCAGC	1 cut(s)	211
GsuI	CTGGAG	1 cut(s)	382
HaeIII	GGCC	2 cut(s)	374, 485
HapII	CCGG	2 cut(s)	44, 418
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	477
Hin1II	CATG	7 cut(s)	353, 390, 425, 533, 559, 631, 652
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	2 cut(s)	518, 652
HpaII	CCGG	2 cut(s)	44, 418
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	34, 228
Hpy188I	TCNGA	3 cut(s)	306, 472, 523
Hpy188III	TCNNGA	2 cut(s)	58, 656
Hpy8I	GTNNAC	2 cut(s)	34, 228
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4IV	ACGT	2 cut(s)	224, 507
HpyCH4V	TGCA	4 cut(s)	285, 378, 514, 529
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	2 cut(s)	224, 507
Hsp92I	GRCGYC	1 cut(s)	477
Hsp92II	CATG	7 cut(s)	353, 390, 425, 533, 559, 631, 652
HspAI	GCGC	1 cut(s)	205
KpnI	GGTACC	1 cut(s)	641
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	274, 433, 601
Lsp1109I	GCAGC	2 cut(s)	307, 531
MaeII	ACGT	2 cut(s)	224, 507
MaeIII	GTNAC	2 cut(s)	106, 136
MalI	GATC	3 cut(s)	276, 435, 603
MboI	GATC	3 cut(s)	274, 433, 601
MboII	GAAGA	3 cut(s)	32, 286, 585
MflI	RGATCY	2 cut(s)	274, 433
MhlI	GDGCHC	2 cut(s)	125, 236
MluCI	AATT	5 cut(s)	12, 53, 69, 172, 660
MlyI	GAGTC	1 cut(s)	661
MnlI	CCTC	8 cut(s)	16, 19, 22, 54, 123, 259, 357, 418
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	534, 560
MspI	CCGG	2 cut(s)	44, 418
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	3 cut(s)	274, 433, 601
NlaIII	CATG	7 cut(s)	353, 390, 425, 533, 559, 631, 652
NlaIV	GGNNCC	3 cut(s)	276, 435, 639
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	390
PciI	ACATGT	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	518
PflMI	CCANNNNNTGG	1 cut(s)	389
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	2 cut(s)	322, 546
PleI	GAGTC	1 cut(s)	660
PpsI	GAGTC	1 cut(s)	660
Ppu21I	YACGTR	1 cut(s)	508
PscI	ACATGT	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	276, 435, 639
PstI	CTGCAG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	274, 433
RsaI	GTAC	2 cut(s)	354, 639
RsaNI	GTAC	2 cut(s)	353, 638
RseI	CAYNNNNRTG	2 cut(s)	534, 560
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	321, 545
Sau3AI	GATC	3 cut(s)	274, 433, 601
SchI	GAGTC	1 cut(s)	661
SduI	GDGCHC	2 cut(s)	125, 236
SetI	ASST	6 cut(s)	33, 156, 227, 451, 510, 613
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	2 cut(s)	534, 560
Sse9I	AATT	5 cut(s)	12, 53, 69, 172, 660
SspI	AATATT	1 cut(s)	410
StyI	CCWWGG	2 cut(s)	480, 627
TaaI	ACNGT	1 cut(s)	310
TaiI	ACGT	2 cut(s)	227, 510
TasI	AATT	5 cut(s)	12, 53, 69, 172, 660
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	3 cut(s)	130, 241, 322
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	320, 544
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	66, 420, 544
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	130, 241, 322
Van91I	CCANNNNNTGG	1 cut(s)	389
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.