AT4G11700

ribosomal large subunit biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001976
Physical Location & Seq
Reverse (-)
7058086 .. 7058637
552 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11700.1

Sequence Viewer

Length: 552 bp
ATGCCCGTGCTGTATAGCACGGGTTATGATCTAGTTAATCTTTGTATAGGGGAAACCAAGAAAAACATCAAACTTACTGAAGATATCCTCGACGCCGGTATGGAGTTGGATTTCATATTACGCGAGTATTGCGATTCTAAGTTACCCCTAGAGGAGGATCCTTTCAATGATGACACTGGCCGATTTTACGTGCTGGACAAGTCACAGATCGAAGACAATGCATGGATTCTTCTCTATTTGGAGCTTGTTGTGGCCACATCTTTCAGGAACCATATCACACATGGTCTAACCAGTTTGAAGATTCTTAAAGTGGCTATGGAAATTTCAAGAAGCCCCGGGGTCTCTGTTAATATGGGACTTGACGCCTATGATGCAACTTTCTACATTAGCTACAAGGACTTTTGCAAGGCTCGGGTTGGTAAGGAAGTCGATCGCATTGCTCTAGTCAGAAGAATCTTGGATCCGCAGTTGGAAATTTTAAGACTCGGCGGTTATACTCTGAGCTCACAAACCATCAAACCATCAAACACCATGGATGCTGGCTCCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006914 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0012505 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016236 GO:0019222 GO:0019439 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030684 GO:0030687 GO:0030867 GO:0031090 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042175 GO:0042254 GO:0042273 GO:0042886 GO:0042981 GO:0043043 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0060548 GO:0061919 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0097159 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901214 GO:1901215 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 ko03040 map03010 map03040
Pfam Domains
Protein Families
KOW Ribosomal_L14e

Protein Analysis

183

Amino Acids

20.69

Weight (kDa)

4.87

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 50 - 162 5.3e-29 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 2 cut(s) 464, 489
AclWI GGATC 4 cut(s) 152, 165, 455, 468
AcoI YGGCCR 2 cut(s) 178, 252
AcsI RAATTY 2 cut(s) 321, 474
AcuI CTGAAG 1 cut(s) 99
AcyI GRCGYC 2 cut(s) 93, 363
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 3 cut(s) 166, 298, 327
AluBI AGCT 3 cut(s) 244, 390, 504
AluI AGCT 3 cut(s) 244, 390, 504
Alw21I GWGCWC 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 346
AlwI GGATC 4 cut(s) 152, 165, 455, 468
Ama87I CYCGRG 2 cut(s) 335, 411
AoxI GGCC 2 cut(s) 178, 252
ApoI RAATTY 2 cut(s) 321, 474
AsuC2I CCSGG 2 cut(s) 336, 337
AvaI CYCGRG 2 cut(s) 335, 411
BalI TGGCCA 1 cut(s) 254
BamHI GGATCC 2 cut(s) 157, 460
BanII GRGCYC 1 cut(s) 506
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 506
BccI CCATC 2 cut(s) 521, 529
BcgI CGANNNNNNTGC 4 cut(s) 200, 234, 419, 453
BcnI CCSGG 2 cut(s) 336, 337
BcoDI GTCTC 1 cut(s) 346
BfaI CTAG 3 cut(s) 32, 149, 443
Bme1390I CCNGG 2 cut(s) 336, 337
BmeT110I CYCGRG 2 cut(s) 335, 411
BmiI GGNNCC 4 cut(s) 159, 269, 462, 544
BmrFI CCNGG 2 cut(s) 336, 337
BmsI GCATC 2 cut(s) 361, 526
BpiI GAAGAC 1 cut(s) 219
BpuMI CCSGG 2 cut(s) 336, 337
BsaAI YACGTR 1 cut(s) 190
BsaHI GRCGYC 2 cut(s) 93, 363
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 4 cut(s) 334, 335, 336, 531
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 181, 291
Bse3DI GCAATG 1 cut(s) 435
BseDI CCNNGG 4 cut(s) 334, 335, 336, 531
BseGI GGATG 1 cut(s) 541
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 1 cut(s) 491
BseNI ACTGG 2 cut(s) 181, 291
BseRI GAGGAG 1 cut(s) 167
Bsh1236I CGCG 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 2 cut(s) 180, 254
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 506
BsiHKCI CYCGRG 2 cut(s) 335, 411
BsiSI CCGG 2 cut(s) 96, 336
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 346
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 2 cut(s) 180, 254
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 2 cut(s) 335, 411
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 5 cut(s) 28, 157, 207, 430, 460
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 2 cut(s) 464, 489
BspANI GGCC 2 cut(s) 180, 254
BspCNI CTCAG 1 cut(s) 492
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 159, 269, 462, 544
BspPI GGATC 4 cut(s) 152, 165, 455, 468
BspTNI GGTCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 2 cut(s) 181, 291
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 4 cut(s) 334, 335, 336, 531
BssMI GATC 5 cut(s) 28, 157, 207, 430, 460
BssNI GRCGYC 2 cut(s) 93, 363
BssT1I CCWWGG 1 cut(s) 531
BstACI GRCGYC 2 cut(s) 93, 363
BstBAI YACGTR 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 2 cut(s) 138, 500
BstDSI CCRYGG 1 cut(s) 531
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 541
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 5 cut(s) 31, 160, 210, 433, 463
BstMAI GTCTC 1 cut(s) 346
BstMBI GATC 5 cut(s) 28, 157, 207, 430, 460
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 2 cut(s) 129, 371
BstSCI CCNGG 2 cut(s) 334, 335
BstUI CGCG 1 cut(s) 123
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 157, 460
BstYI RGATCY 2 cut(s) 157, 460
BsuRI GGCC 2 cut(s) 180, 254
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 1 cut(s) 541
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 541
Cfr10I RCCGGY 1 cut(s) 95
Cfr9I CCCGGG 1 cut(s) 335
CseI GACGC 2 cut(s) 101, 371
CviAII CATG 3 cut(s) 222, 281, 532
CviJI RGCY 9 cut(s) 180, 244, 254, 314, 333, 390, 410, 504, 543
CviKI_1 RGCY 9 cut(s) 180, 244, 254, 314, 333, 390, 410, 504, 543
DdeI CTNAG 2 cut(s) 138, 500
DpnI GATC 5 cut(s) 30, 159, 209, 432, 462
DpnII GATC 5 cut(s) 28, 157, 207, 430, 460
EaeI YGGCCR 2 cut(s) 178, 252
Ecl136II GAGCTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 531
Eco24I GRGCYC 1 cut(s) 506
Eco31I GGTCTC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 85
Eco53kI GAGCTC 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 99
Eco88I CYCGRG 2 cut(s) 335, 411
EcoICRI GAGCTC 1 cut(s) 504
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 531
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 225, 284, 535
FaqI GGGAC 1 cut(s) 369
FatI CATG 3 cut(s) 221, 280, 531
FokI GGATG 1 cut(s) 548
FriOI GRGCYC 1 cut(s) 506
FspBI CTAG 3 cut(s) 32, 149, 443
HaeIII GGCC 2 cut(s) 180, 254
HapII CCGG 2 cut(s) 96, 336
HgaI GACGC 2 cut(s) 101, 371
Hin1I GRCGYC 2 cut(s) 93, 363
Hin1II CATG 3 cut(s) 225, 284, 535
HinfI GANTC 5 cut(s) 134, 226, 301, 453, 483
HpaII CCGG 2 cut(s) 96, 336
Hpy188I TCNGA 3 cut(s) 449, 501, 551
Hpy188III TCNNGA 2 cut(s) 265, 327
Hpy99I CGWCG 1 cut(s) 95
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 3 cut(s) 221, 374, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 371
HpyF3I CTNAG 2 cut(s) 138, 500
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 2 cut(s) 93, 363
Hsp92II CATG 3 cut(s) 225, 284, 535
Kzo9I GATC 5 cut(s) 28, 157, 207, 430, 460
LmnI GCTCC 2 cut(s) 241, 548
LpnPI CCDG 7 cut(s) 109, 162, 179, 250, 304, 349, 525
LweI GCATC 2 cut(s) 361, 526
MaeI CTAG 3 cut(s) 32, 149, 443
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 141, 201
MalI GATC 5 cut(s) 30, 159, 209, 432, 462
MboI GATC 5 cut(s) 28, 157, 207, 430, 460
MboII GAAGA 5 cut(s) 92, 221, 224, 310, 462
MflI RGATCY 2 cut(s) 157, 460
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 2 cut(s) 321, 474
MluNI TGGCCA 1 cut(s) 254
MlyI GAGTC 1 cut(s) 477
MmeI TCCRAC 2 cut(s) 87, 450
MnlI CCTC 3 cut(s) 98, 145, 148
Mox20I TGGCCA 1 cut(s) 254
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 254
MseI TTAA 4 cut(s) 36, 306, 348, 479
Msp20I TGGCCA 1 cut(s) 254
MspI CCGG 2 cut(s) 96, 336
MspR9I CCNGG 2 cut(s) 336, 337
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 2 cut(s) 129, 371
NciI CCSGG 2 cut(s) 336, 337
NcoI CCATGG 1 cut(s) 531
NdeII GATC 5 cut(s) 28, 157, 207, 430, 460
NlaIII CATG 3 cut(s) 225, 284, 535
NlaIV GGNNCC 4 cut(s) 159, 269, 462, 544
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 223
PfeI GAWTC 4 cut(s) 134, 226, 301, 453
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 1 cut(s) 477
PpsI GAGTC 1 cut(s) 477
Ppu21I YACGTR 1 cut(s) 190
Psp124BI GAGCTC 1 cut(s) 506
PspN4I GGNNCC 4 cut(s) 159, 269, 462, 544
PsuI RGATCY 2 cut(s) 157, 460
PvuI CGATCG 1 cut(s) 433
SacI GAGCTC 1 cut(s) 506
SaqAI TTAA 4 cut(s) 36, 306, 348, 479
Sau3AI GATC 5 cut(s) 28, 157, 207, 430, 460
SchI GAGTC 1 cut(s) 477
ScrFI CCNGG 2 cut(s) 336, 337
SduI GDGCHC 1 cut(s) 506
SetI ASST 4 cut(s) 192, 246, 392, 506
SfaNI GCATC 2 cut(s) 361, 526
SmaI CCCGGG 1 cut(s) 337
Sse9I AATT 2 cut(s) 321, 474
SsiI CCGC 2 cut(s) 464, 489
SspMI CTAG 3 cut(s) 32, 149, 443
SstI GAGCTC 1 cut(s) 506
StyD4I CCNGG 2 cut(s) 334, 335
StyI CCWWGG 1 cut(s) 531
TaiI ACGT 1 cut(s) 192
TaqI TCGA 3 cut(s) 90, 210, 429
TasI AATT 2 cut(s) 321, 474
TfiI GAWTC 4 cut(s) 134, 226, 301, 453
Tru1I TTAA 4 cut(s) 36, 306, 348, 479
Tru9I TTAA 4 cut(s) 36, 306, 348, 479
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 201
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 1 cut(s) 103
TspMI CCCGGG 1 cut(s) 335
TspRI CASTG 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 321, 474
XcmI CCANNNNNNNNNTGG 1 cut(s) 278
XmaI CCCGGG 1 cut(s) 335
XspI CTAG 3 cut(s) 32, 149, 443
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.