AT3G20555

mitotic sister chromatid cohesion

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
7178200 .. 7178614
415 bp
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UTR
Exon/CDS
Intron
AT3G20555.1

Sequence Viewer

Length: 333 bp
ATGATTTGGGATTCGATGAGCCATCACCCGACAAACCAAAGCATCACCCGAGAAACTCATACTGACCCGTCTCTAAAGCTCGAGTCTATGAATGCTGTCTTCCACATAAGCTTCAAGGCCAACAGTTGCGACTACAAATCGAGGATCAAAGTTGGTGGTAAACCTGGTGCACTCTGTTACAATCAGAACAAGATCACTGTCACTTCTGATGGTTTATGTCGTTTAGCTATCCACCTCAACTATATCTATGATCTTGTATTTGTCTTCTATCCTATCAAAGTTGGTGGTAAAGCTGGTGCACTCGATTTGTTACAGGCTCACCGATTTGTTTGA

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

9.07

Isoelectric Point (pI)

31.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 115
AjnI CCWGG 1 cut(s) 163
AluBI AGCT 4 cut(s) 79, 111, 227, 293
AluI AGCT 4 cut(s) 79, 111, 227, 293
Alw21I GWGCWC 2 cut(s) 172, 301
Alw26I GTCTC 1 cut(s) 75
Alw44I GTGCAC 2 cut(s) 168, 297
AlwI GGATC 1 cut(s) 152
Ama87I CYCGRG 2 cut(s) 48, 80
AoxI GGCC 1 cut(s) 117
ApaLI GTGCAC 2 cut(s) 168, 297
AsuHPI GGTGA 3 cut(s) 17, 37, 311
AvaI CYCGRG 2 cut(s) 48, 80
BaeGI GKGCMC 2 cut(s) 172, 301
BbsI GAAGAC 2 cut(s) 91, 256
Bbv12I GWGCWC 2 cut(s) 172, 301
BccI CCATC 2 cut(s) 30, 203
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 165
BmeT110I CYCGRG 2 cut(s) 48, 80
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 2 cut(s) 91, 256
BseBI CCWGG 1 cut(s) 165
BseSI GKGCMC 2 cut(s) 172, 301
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 172, 301
BsiHKCI CYCGRG 2 cut(s) 48, 80
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 1 cut(s) 119
BsoBI CYCGRG 2 cut(s) 48, 80
Bsp1286I GDGCHC 2 cut(s) 172, 301
Bsp143I GATC 3 cut(s) 144, 192, 250
BspANI GGCC 1 cut(s) 119
BspPI GGATC 1 cut(s) 152
BssMI GATC 3 cut(s) 144, 192, 250
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 125, 199
BstKTI GATC 3 cut(s) 147, 195, 253
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 3 cut(s) 144, 192, 250
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstSLI GKGCMC 2 cut(s) 172, 301
BstV2I GAAGAC 2 cut(s) 91, 256
BsuRI GGCC 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 195
CsiI ACCWGGT 1 cut(s) 163
CspCI CAANNNNNGTGG 4 cut(s) 136, 171, 265, 300
CviJI RGCY 7 cut(s) 21, 79, 111, 119, 227, 293, 317
CviKI_1 RGCY 7 cut(s) 21, 79, 111, 119, 227, 293, 317
DpnI GATC 3 cut(s) 146, 194, 252
DpnII GATC 3 cut(s) 144, 192, 250
Eco88I CYCGRG 2 cut(s) 48, 80
EcoRII CCWGG 1 cut(s) 163
Esp3I CGTCTC 1 cut(s) 75
FaiI YATR 6 cut(s) 60, 89, 107, 217, 243, 249
HaeIII GGCC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 109
HinfI GANTC 2 cut(s) 11, 83
HphI GGTGA 3 cut(s) 17, 37, 311
Hpy166II GTNNAC 3 cut(s) 161, 170, 299
Hpy188I TCNGA 2 cut(s) 186, 208
Hpy8I GTNNAC 3 cut(s) 161, 170, 299
HpyCH4III ACNGT 2 cut(s) 125, 199
HpyCH4V TGCA 2 cut(s) 170, 299
Kzo9I GATC 3 cut(s) 144, 192, 250
LpnPI CCDG 4 cut(s) 150, 177, 279, 299
LweI GCATC 1 cut(s) 51
MabI ACCWGGT 1 cut(s) 163
MaeIII GTNAC 3 cut(s) 176, 199, 309
MalI GATC 3 cut(s) 146, 194, 252
MboI GATC 3 cut(s) 144, 192, 250
MboII GAAGA 2 cut(s) 91, 256
MhlI GDGCHC 2 cut(s) 172, 301
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 2 cut(s) 135, 245
MspR9I CCNGG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 165
NdeII GATC 3 cut(s) 144, 192, 250
NmuCI GTSAC 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 80
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 11
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspXI VCTCGAGB 1 cut(s) 80
Sau3AI GATC 3 cut(s) 144, 192, 250
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 165
SduI GDGCHC 2 cut(s) 172, 301
SetI ASST 6 cut(s) 81, 113, 166, 229, 237, 295
SexAI ACCWGGT 1 cut(s) 163
SfaNI GCATC 1 cut(s) 51
Sfr274I CTCGAG 1 cut(s) 80
SlaI CTCGAG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
StyD4I CCNGG 1 cut(s) 163
TaaI ACNGT 2 cut(s) 125, 199
TaqI TCGA 4 cut(s) 14, 81, 140, 303
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 1 cut(s) 202
VneI GTGCAC 2 cut(s) 168, 297
XhoI CTCGAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.