AT3G44770

mitotic sister chromatid cohesion

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
16315932 .. 16319707
3776 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44770.1

Sequence Viewer

Length: 1518 bp
ATGTCCACTCCTCGCCTCCGTCGCATGCCAAGACTCGTCAATAAAGCATACCGGTCTATCCGCTGGAATTGGCGTCACTTGCACTATAGGGTTCCTCTCGGGTTGGGGATTTTCTTGATGGTTTGCTCGCCTCCACGCCTCTTCCTCTTGAATTGCAATGTCCAAGGTTTCTTGAGAGGAATTCAAGCCACTACGAGGGAAAACTGTGCTTTGCATACAAAAACAAAGAGCTGTTGGATTGTGGAAAATTATCTGACGAAACCTGCCACTCGATTTTGTGTGGATTGGGTCAACATGTCGATGCTTTACATTTATCCAAAACCGAAGAAGAAGTCGACGGATGGACATCTGAGGAAGATGAAGAACTTGACCAAGAATACTGTCGCCAAGTTACCGAGTCTCTGGTACTCTTCTCATGTCTCTGCTTTGATTTGGTATTTAGGTTCTGGTTTCGATATTGATGGTAAAGTTTGTATCCCAGCATGTGGAATCTCACCAGTCTTTCTAGGTGCTAATAAAAACCCGCGTAGCGAAGTCGCTCTTTATGGCCGTTTGGGAGTTCATTGCTTCAACATTGACAAGGAGAGGAAGTTTCAGTATATGCGCATACCTAAATACAATGTTCAATATCCTGAAGCTATGTCTTTCCATATAACCGTGGAGGTGAATGATCTTGCTGATAATTCAGCTCACACTTTACAGAACTTGGTCACAAGATCTTTTTCTAGGAACGGAGAGGACTTAAGAGTCTCTACTGGAATTTGCAGAATCAAACCCAAAACACCTGAAAGAGAGATCTGTCTTGTGGATGAGGAAGCAATAGATAAGTTTTACAGAGGTGTTATGCCCAACTTTGTGTCCAAACTAGGGGCTGACGATGATAAGCTGAGGTTCTACGAGGTTCAGGAGCAGGACGTATGTGCAAATGATTGGTTACGTCTATATACTGAATTCGCACTTTTCTCCTACTGGAGATATAATGAGGACGGATTTGAGTCTTGTTTACCTGTGGAGATCAAGAAGATAATTGTGGAAACTTGTGACACTCACAGAGAGCCGCGTATGAAGCTGAAATTGAATCCATCCGACGCAGATTTCATCAAATTCGCGATCATATACGACATGATCCTCGTTGCAACGATGATTTCACTGTGGATGATGTTTCTTGGTGAGAAGCCTGAGTTCATCGATTTCGACAACTTTGAGCTATCCAAAGTAACTTTCCGTGGAACGGTGGGGATTTTAGGTATAATGATGGCAGGTGCTTATTTGTGTGGACCTAATAACTGCATCATATTTTGTTTGTTCGACGTTGCTTTGTTTGGCTATAAGACCATTGGTTTCAAAAGAATTGGTAAAGAGTTGGCTATGATCTATGGTTTCTTGGCTCTGGCTTTTTTGCTCATGTACTTGTTTGGATTCTTCTTTGGAGTTTTATGGCTACTAGTTTCTCCTCCGAGTCTCCTTTTGGGTTTCCAATTTCTCAAGCGAAGAAACGTAAAAGAATCTCAAGATTAG

Protein Analysis

505

Amino Acids

58.45

Weight (kDa)

9.18

Isoelectric Point (pI)

41.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 282 - 369 1.5e-18 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1250
AasI GACNNNNNNGTC 1 cut(s) 746
Acc16I TGCGCA 1 cut(s) 605
Acc36I ACCTGC 2 cut(s) 271, 1250
AccB7I CCANNNNNTGG 1 cut(s) 485
AccI GTMKAC 1 cut(s) 335
AccII CGCG 3 cut(s) 526, 1060, 1109
AciI CCGC 3 cut(s) 61, 524, 1058
AclWI GGATC 1 cut(s) 1120
AcoI YGGCCR 1 cut(s) 547
AcsI RAATTY 4 cut(s) 180, 759, 950, 1103
AcuI CTGAAG 1 cut(s) 654
AcyI GRCGYC 1 cut(s) 73
AfaI GTAC 2 cut(s) 407, 1409
AfiI CCNNNNNNNGG 4 cut(s) 195, 485, 867, 1231
AflII CTTAAG 1 cut(s) 742
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 51
AgsI TTSAA 6 cut(s) 151, 185, 571, 626, 1078, 1345
AhlI ACTAGT 1 cut(s) 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 1205, 1237
AluBI AGCT 6 cut(s) 231, 638, 689, 886, 1069, 1207
AluI AGCT 6 cut(s) 231, 638, 689, 886, 1069, 1207
Alw26I GTCTC 4 cut(s) 404, 424, 754, 1466
AlwI GGATC 1 cut(s) 1120
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 547
ApoI RAATTY 4 cut(s) 180, 759, 950, 1103
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AsiGI ACCGGT 1 cut(s) 51
AspLEI GCGC 1 cut(s) 606
AspS9I GGNCC 1 cut(s) 1277
AsuHPI GGTGA 3 cut(s) 486, 676, 1181
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 1277
BbvCI CCTCAGC 1 cut(s) 887
BccI CCATC 5 cut(s) 112, 335, 455, 1090, 1249
BceAI ACGGC 1 cut(s) 534
BciVI GTATCC 1 cut(s) 485
BcoDI GTCTC 4 cut(s) 404, 424, 754, 1466
BcuI ACTAGT 1 cut(s) 1444
BfaI CTAG 4 cut(s) 506, 726, 866, 1445
BfmI CTRYAG 1 cut(s) 85
BfrI CTTAAG 1 cut(s) 742
BfuAI ACCTGC 2 cut(s) 271, 1250
BfuI GTATCC 1 cut(s) 485
BglII AGATCT 2 cut(s) 716, 795
BisI GCNGC 1 cut(s) 1058
BlsI GCNGC 1 cut(s) 1059
Bme18I GGWCC 1 cut(s) 1277
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 1277
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 2 cut(s) 291, 1299
BpmI CTGGAG 1 cut(s) 991
Bpu10I CCTNAGC 1 cut(s) 887
BpuEI CTTGAG 3 cut(s) 193, 1469, 1494
Bsa29I ATCGAT 1 cut(s) 1188
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 163, 657, 1225
BsaWI WCCGGW 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 575, 605
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 485, 867, 1231
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 3 cut(s) 497, 760, 974
Bse3DI GCAATG 2 cut(s) 163, 562
Bse8I GATNNNNATC 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 1188
BseDI CCNNGG 3 cut(s) 163, 657, 1225
BseGI GGATG 4 cut(s) 346, 814, 1082, 1161
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 4 cut(s) 195, 485, 867, 1231
BseMI GCAATG 2 cut(s) 163, 562
BseMII CTCAG 3 cut(s) 341, 878, 1170
BseNI ACTGG 3 cut(s) 497, 760, 974
BseRI GAGGAG 1 cut(s) 1443
BseYI CCCAGC 1 cut(s) 478
Bsh1236I CGCG 3 cut(s) 526, 1060, 1109
BshFI GGCC 1 cut(s) 549
BshTI ACCGGT 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 1188
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 4 cut(s) 195, 485, 867, 1231
BsmAI GTCTC 4 cut(s) 404, 424, 754, 1466
BsnI GGCC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 98
Bsp143I GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
Bsp68I TCGCGA 1 cut(s) 1109
BspACI CCGC 3 cut(s) 61, 524, 1058
BspANI GGCC 1 cut(s) 549
BspCNI CTCAG 3 cut(s) 342, 879, 1171
BspDI ATCGAT 1 cut(s) 1188
BspFNI CGCG 3 cut(s) 526, 1060, 1109
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 2 cut(s) 271, 1250
BspPI GGATC 1 cut(s) 1120
BspTI CTTAAG 1 cut(s) 742
BsrDI GCAATG 2 cut(s) 163, 562
BsrFI RCCGGY 1 cut(s) 51
BsrI ACTGG 3 cut(s) 497, 760, 974
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 3 cut(s) 163, 657, 1225
BssMI GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
BssNI GRCGYC 1 cut(s) 73
BssT1I CCWWGG 1 cut(s) 163
Bst4CI ACNGT 5 cut(s) 206, 382, 658, 1152, 1234
Bst6I CTCTTC 2 cut(s) 146, 415
BstACI GRCGYC 1 cut(s) 73
BstAFI CTTAAG 1 cut(s) 742
BstC8I GCNNGC 2 cut(s) 26, 128
BstDEI CTNAG 3 cut(s) 350, 887, 1179
BstDSI CCRYGG 2 cut(s) 657, 1225
BstF5I GGATG 4 cut(s) 346, 814, 1082, 1161
BstFNI CGCG 3 cut(s) 526, 1060, 1109
BstHHI GCGC 1 cut(s) 606
BstKTI GATC 7 cut(s) 673, 719, 798, 1017, 1113, 1128, 1374
BstMAI GTCTC 4 cut(s) 404, 424, 754, 1466
BstMBI GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
BstMWI GCNNNNNNNGC 3 cut(s) 21, 79, 1066
BstNSI RCATGY 3 cut(s) 28, 298, 486
BstSFI CTRYAG 1 cut(s) 85
BstUI CGCG 3 cut(s) 526, 1060, 1109
BstX2I RGATCY 2 cut(s) 716, 795
BstYI RGATCY 2 cut(s) 716, 795
Bsu15I ATCGAT 1 cut(s) 1188
BsuI GTATCC 1 cut(s) 485
BsuRI GGCC 1 cut(s) 549
BsuTUI ATCGAT 1 cut(s) 1188
BtgI CCRYGG 2 cut(s) 657, 1225
BtsCI GGATG 4 cut(s) 346, 814, 1082, 1161
BtsIMutI CAGTG 1 cut(s) 1148
BtuMI TCGCGA 1 cut(s) 1109
BveI ACCTGC 2 cut(s) 271, 1250
Cac8I GCNNGC 2 cut(s) 26, 128
CfoI GCGC 1 cut(s) 606
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 1277
ClaI ATCGAT 1 cut(s) 1188
CseI GACGC 2 cut(s) 62, 1097
Csp6I GTAC 2 cut(s) 406, 1408
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 6 cut(s) 25, 295, 416, 483, 1123, 1405
CviQI GTAC 2 cut(s) 406, 1408
DdeI CTNAG 3 cut(s) 350, 887, 1179
DpnI GATC 7 cut(s) 672, 718, 797, 1016, 1112, 1127, 1373
DpnII GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
DrdI GACNNNNNNGTC 1 cut(s) 746
DseDI GACNNNNNNGTC 1 cut(s) 746
EaeI YGGCCR 1 cut(s) 547
Eam1104I CTCTTC 2 cut(s) 146, 415
EarI CTCTTC 2 cut(s) 146, 415
Eco130I CCWWGG 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 1277
Eco57I CTGAAG 1 cut(s) 654
Eco88I CYCGRG 1 cut(s) 98
EcoRI GAATTC 2 cut(s) 180, 950
EcoT14I CCWWGG 1 cut(s) 163
ErhI CCWWGG 1 cut(s) 163
FaeI CATG 6 cut(s) 28, 298, 419, 486, 1126, 1408
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 6 cut(s) 24, 294, 415, 482, 1122, 1404
FauI CCCGC 1 cut(s) 531
FblI GTMKAC 1 cut(s) 335
Fnu4HI GCNGC 1 cut(s) 1058
FokI GGATG 4 cut(s) 353, 821, 1069, 1168
Fsp4HI GCNGC 1 cut(s) 1058
FspAI RTGCGCAY 1 cut(s) 605
FspBI CTAG 4 cut(s) 506, 726, 866, 1445
FspI TGCGCA 1 cut(s) 605
GlaI GCGC 1 cut(s) 605
GluI GCNGC 1 cut(s) 1058
GsaI CCCAGC 1 cut(s) 482
GsuI CTGGAG 1 cut(s) 991
HaeIII GGCC 1 cut(s) 549
HapII CCGG 1 cut(s) 52
HgaI GACGC 2 cut(s) 62, 1097
HhaI GCGC 1 cut(s) 606
Hin1I GRCGYC 1 cut(s) 73
Hin1II CATG 6 cut(s) 28, 298, 419, 486, 1126, 1408
Hin6I GCGC 1 cut(s) 604
HinP1I GCGC 1 cut(s) 604
HincII GTYRAC 2 cut(s) 292, 336
HindII GTYRAC 2 cut(s) 292, 336
HpaII CCGG 1 cut(s) 52
HphI GGTGA 3 cut(s) 486, 676, 1181
Hpy166II GTNNAC 5 cut(s) 6, 292, 336, 1004, 1277
Hpy188I TCNGA 4 cut(s) 255, 351, 1087, 1458
Hpy188III TCNNGA 8 cut(s) 115, 148, 172, 632, 905, 1018, 1108, 1511
Hpy8I GTNNAC 5 cut(s) 6, 292, 336, 1004, 1277
Hpy99I CGWCG 4 cut(s) 24, 340, 1091, 1313
HpyCH4III ACNGT 5 cut(s) 206, 382, 658, 1152, 1234
HpyCH4IV ACGT 4 cut(s) 915, 937, 1311, 1497
HpyCH4V TGCA 7 cut(s) 82, 156, 214, 765, 923, 1136, 1290
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 79, 1066
HpyF3I CTNAG 3 cut(s) 350, 887, 1179
HpySE526I ACGT 4 cut(s) 915, 937, 1311, 1497
Hsp92I GRCGYC 1 cut(s) 73
Hsp92II CATG 6 cut(s) 28, 298, 419, 486, 1126, 1408
HspAI GCGC 1 cut(s) 604
Kzo9I GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
LmnI GCTCC 1 cut(s) 907
LweI GCATC 2 cut(s) 291, 1299
MaeI CTAG 4 cut(s) 506, 726, 866, 1445
MaeII ACGT 4 cut(s) 915, 937, 1311, 1497
MaeIII GTNAC 6 cut(s) 74, 390, 709, 933, 1040, 1216
MalI GATC 7 cut(s) 672, 718, 797, 1016, 1112, 1127, 1373
MboI GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
MboII GAAGA 9 cut(s) 133, 337, 340, 367, 373, 402, 1033, 1414, 1503
MflI RGATCY 2 cut(s) 716, 795
MlyI GAGTC 5 cut(s) 27, 406, 756, 1004, 1468
MmeI TCCRAC 2 cut(s) 215, 1110
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 63
MspCI CTTAAG 1 cut(s) 742
MspI CCGG 1 cut(s) 52
MvnI CGCG 3 cut(s) 526, 1060, 1109
MwoI GCNNNNNNNGC 3 cut(s) 21, 79, 1066
NdeII GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
NlaIII CATG 6 cut(s) 28, 298, 419, 486, 1126, 1408
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 3 cut(s) 74, 709, 1040
NruI TCGCGA 1 cut(s) 1109
NsbI TGCGCA 1 cut(s) 605
NspI RCATGY 3 cut(s) 28, 298, 486
PaeI GCATGC 1 cut(s) 28
PaqCI CACCTGC 1 cut(s) 1250
PciI ACATGT 1 cut(s) 294
PfeI GAWTC 5 cut(s) 489, 768, 1078, 1419, 1505
PflMI CCANNNNNTGG 1 cut(s) 485
PinAI ACCGGT 1 cut(s) 51
PkrI GCNGC 1 cut(s) 1059
PleI GAGTC 5 cut(s) 27, 405, 755, 1003, 1467
PpsI GAGTC 5 cut(s) 27, 405, 755, 1003, 1467
PscI ACATGT 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 1277
PsuI RGATCY 2 cut(s) 716, 795
RruI TCGCGA 1 cut(s) 1109
RsaI GTAC 2 cut(s) 407, 1409
RsaNI GTAC 2 cut(s) 406, 1408
RseI CAYNNNNRTG 1 cut(s) 299
SalI GTCGAC 1 cut(s) 334
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 1 cut(s) 1058
Sau3AI GATC 7 cut(s) 670, 716, 795, 1014, 1110, 1125, 1371
Sau96I GGNCC 1 cut(s) 1277
SchI GAGTC 5 cut(s) 27, 406, 756, 1004, 1468
SfaNI GCATC 2 cut(s) 291, 1299
SfcI CTRYAG 1 cut(s) 85
SinI GGWCC 1 cut(s) 1277
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 4 cut(s) 172, 742, 1484, 1509
SmoI CTYRAG 4 cut(s) 172, 742, 1484, 1509
SpeI ACTAGT 1 cut(s) 1444
SphI GCATGC 1 cut(s) 28
SsiI CCGC 3 cut(s) 61, 524, 1058
SspMI CTAG 4 cut(s) 506, 726, 866, 1445
StyI CCWWGG 1 cut(s) 163
TaaI ACNGT 5 cut(s) 206, 382, 658, 1152, 1234
TaiI ACGT 4 cut(s) 918, 940, 1314, 1500
TaqI TCGA 7 cut(s) 271, 299, 335, 453, 1188, 1194, 1308
TatI WGTACW 1 cut(s) 1407
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 5 cut(s) 489, 768, 1078, 1419, 1505
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 1 cut(s) 1155
TseFI GTSAC 3 cut(s) 74, 709, 1040
Tsp45I GTSAC 3 cut(s) 74, 709, 1040
TspDTI ATGAA 5 cut(s) 374, 551, 1079, 1087, 1174
TspGWI ACGGA 5 cut(s) 8, 353, 747, 1002, 1214
TspRI CASTG 1 cut(s) 1155
Van91I CCANNNNNTGG 1 cut(s) 485
Vha464I CTTAAG 1 cut(s) 742
VpaK11BI GGWCC 1 cut(s) 1277
XapI RAATTY 4 cut(s) 180, 759, 950, 1103
XceI RCATGY 3 cut(s) 28, 298, 486
XmiI GTMKAC 1 cut(s) 335
XspI CTAG 4 cut(s) 506, 726, 866, 1445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.