AT3G19790
MYB Family

nuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001976
Physical Location & Seq
Reverse (-)
6874603 .. 6875911
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19790.1

Sequence Viewer

Length: 504 bp
ATGGTTATTTCTCAAGAGGAAGCTGACAATGATCATGCAAGCGGATCGAAAGGATCAAGCGTTGGGGAAAACAGTTTGGATTCTATAGAGTCTGAAGAGCATGATGATGATATGTCTGATGCGAGCGGATCGGAAGAATCAAGCGATGAAGAAAACCTTGTGGATTCTCTAATGTCTGAAATGATTAATGAGTGGTATGATGAGATGTATGATGATTTAACAGACGGACTCGATGATATTCTTGCTGCTAGAATCCCTTCACTTAGCGCTCTACGAACCAGCAATAAGCAACCCTCAGATTCCAACAAGACTAGTATTGTGTTTGATTCAATGAAGGCACTCCATGATCTACCTGGTGTTAGGATGTGGTCGCCTTTATACCGTGCATCGTTGACTCATTTTCAGGCTGATGTTACTCATAGAGAGGCCTTCTTGGCATTTTCTGATCCTGAGGATAAGATTTGCTACTTAGAGAACAAGACTGGCAAAAAGAGAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

167

Amino Acids

18.63

Weight (kDa)

4.23

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 126
AciI CCGC 2 cut(s) 42, 126
AclWI GGATC 4 cut(s) 52, 61, 136, 440
AcuI CTGAAG 1 cut(s) 114
AfeI AGCGCT 1 cut(s) 268
AgsI TTSAA 1 cut(s) 330
AhlI ACTAGT 1 cut(s) 311
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 4 cut(s) 52, 61, 136, 440
Aor51HI AGCGCT 1 cut(s) 268
AoxI GGCC 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 245
AseI ATTAAT 1 cut(s) 186
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 450
BbvI GCAGC 1 cut(s) 232
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 31
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 2 cut(s) 249, 312
BfmI CTRYAG 1 cut(s) 84
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 434
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 354
BmsI GCATC 2 cut(s) 109, 395
Bse1I ACTGG 1 cut(s) 487
Bse21I CCTNAGG 1 cut(s) 450
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 369
BseMII CTCAG 2 cut(s) 309, 441
BseNI ACTGG 1 cut(s) 487
BseXI GCAGC 1 cut(s) 232
BshFI GGCC 1 cut(s) 428
BsnI GGCC 1 cut(s) 428
Bsp143I GATC 6 cut(s) 31, 44, 53, 128, 346, 445
BspACI CCGC 2 cut(s) 42, 126
BspANI GGCC 1 cut(s) 428
BspCNI CTCAG 2 cut(s) 308, 442
BspPI GGATC 4 cut(s) 52, 61, 136, 440
BspQI GCTCTTC 1 cut(s) 90
BsrBI CCGCTC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 487
BssMI GATC 6 cut(s) 31, 44, 53, 128, 346, 445
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 2 cut(s) 74, 383
Bst6I CTCTTC 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 40, 124
BstDEI CTNAG 4 cut(s) 263, 295, 450, 469
BstF5I GGATG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 6 cut(s) 34, 47, 56, 131, 349, 448
BstMBI GATC 6 cut(s) 31, 44, 53, 128, 346, 445
BstMWI GCNNNNNNNGC 1 cut(s) 434
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 232
Bsu36I CCTNAGG 1 cut(s) 450
BsuRI GGCC 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 159
BtsCI GGATG 1 cut(s) 369
Cac8I GCNNGC 2 cut(s) 40, 124
CfoI GCGC 1 cut(s) 269
CsiI ACCWGGT 1 cut(s) 352
CviAII CATG 3 cut(s) 35, 101, 344
CviJI RGCY 3 cut(s) 23, 407, 428
CviKI_1 RGCY 3 cut(s) 23, 407, 428
DdeI CTNAG 4 cut(s) 263, 295, 450, 469
DpnI GATC 6 cut(s) 33, 46, 55, 130, 348, 447
DpnII GATC 6 cut(s) 31, 44, 53, 128, 346, 445
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco147I AGGCCT 1 cut(s) 428
Eco47III AGCGCT 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 3 cut(s) 38, 104, 347
FaiI YATR 9 cut(s) 36, 86, 102, 113, 198, 210, 345, 379, 420
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FatI CATG 3 cut(s) 34, 100, 343
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 246
FokI GGATG 1 cut(s) 376
Fsp4HI GCNGC 1 cut(s) 246
FspBI CTAG 2 cut(s) 249, 312
GlaI GCGC 1 cut(s) 268
GluI GCNGC 1 cut(s) 246
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 1 cut(s) 428
HhaI GCGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 38, 104, 347
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 393
HindII GTYRAC 1 cut(s) 393
HinfI GANTC 9 cut(s) 80, 89, 137, 164, 228, 252, 299, 326, 394
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 6 cut(s) 94, 118, 133, 178, 298, 445
Hpy188III TCNNGA 2 cut(s) 14, 449
Hpy8I GTNNAC 1 cut(s) 393
HpyAV CCTTC 3 cut(s) 267, 328, 439
HpyCH4III ACNGT 2 cut(s) 74, 383
HpyCH4V TGCA 2 cut(s) 38, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 434
HpyF3I CTNAG 4 cut(s) 263, 295, 450, 469
Hsp92II CATG 3 cut(s) 38, 104, 347
HspAI GCGC 1 cut(s) 267
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 6 cut(s) 31, 44, 53, 128, 346, 445
LguI GCTCTTC 1 cut(s) 90
LpnPI CCDG 6 cut(s) 292, 339, 366, 389, 462, 468
Lsp1109I GCAGC 1 cut(s) 232
LweI GCATC 2 cut(s) 109, 395
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 2 cut(s) 249, 312
MaeIII GTNAC 1 cut(s) 412
MalI GATC 6 cut(s) 33, 46, 55, 130, 348, 447
MbiI CCGCTC 1 cut(s) 126
MboI GATC 6 cut(s) 31, 44, 53, 128, 346, 445
MboII GAAGA 3 cut(s) 107, 146, 161
MlyI GAGTC 3 cut(s) 98, 222, 388
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 4 cut(s) 10, 304, 418, 445
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 2 cut(s) 186, 218
MslI CAYNNNNRTG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 434
NdeII GATC 6 cut(s) 31, 44, 53, 128, 346, 445
NlaIII CATG 3 cut(s) 38, 104, 347
PceI AGGCCT 1 cut(s) 428
PciSI GCTCTTC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 6 cut(s) 80, 137, 164, 252, 299, 326
PkrI GCNGC 1 cut(s) 247
PleI GAGTC 3 cut(s) 97, 222, 388
PpsI GAGTC 3 cut(s) 97, 222, 388
PshBI ATTAAT 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 2 cut(s) 186, 218
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 6 cut(s) 31, 44, 53, 128, 346, 445
SchI GAGTC 3 cut(s) 98, 222, 388
ScrFI CCNGG 1 cut(s) 354
SetI ASST 3 cut(s) 25, 159, 355
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 2 cut(s) 109, 395
SfcI CTRYAG 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
SpeI ACTAGT 1 cut(s) 311
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 2 cut(s) 42, 126
SspMI CTAG 2 cut(s) 249, 312
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 2 cut(s) 74, 383
TaqI TCGA 2 cut(s) 47, 231
TfiI GAWTC 6 cut(s) 80, 137, 164, 252, 299, 326
Tru1I TTAA 2 cut(s) 186, 218
Tru9I TTAA 2 cut(s) 186, 218
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 162, 347
TspGWI ACGGA 1 cut(s) 240
VspI ATTAAT 1 cut(s) 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 2 cut(s) 249, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.