AT4G17700

histone demethylase activity (H3-K9 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001976
Physical Location & Seq
Forward (+)
9854322 .. 9855745
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17700.1

Sequence Viewer

Length: 495 bp
ATGGAGGAGTACGAGTTTTTGGTCCGAGTGAGGGAGGCTGGGGGGTTCGACATCGAGCATTTAATGGACACAAAACCATCCTCTTGTGTGATCGGTTGTCGCGAGTTTGATAATAATGATGATTACAACGCCCATATTGTCCTTTTTGCTAGGATGGGGATCCATAAGTACAATATGATACAGGGGACGAACTTGCAGCTCAGTTGCGTAGAGAAATACAATTATCGATCTCCAAGAGTATATTCCGCCTTCTATATAACCTTGATTGCTAAGGATCCAGATGCATGCAATTCCCTTGTGACTTTTCAGACAAGGGTTGTTGAAGAAGGCTTTAACATGACGAAACTGTCTTGCAATATCGCTAGACCTAAGCCCGGACCACAAGAAAACGCTGCGTTGCCACGGCATTCTGTGGATCTTGAACCGGTAGATGTATTCTACAAAGGTAGTTTGCCTGAGTGGCCACCAGAGGATGCTTTCAATGATAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003714 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032991 GO:0033169 GO:0035257 GO:0036211 GO:0042809 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043433 GO:0043565 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0046966 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051276 GO:0051291 GO:0051427 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC

Protein Analysis

164

Amino Acids

18.76

Weight (kDa)

4.95

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
AccII CGCG 1 cut(s) 102
AciI CCGC 1 cut(s) 246
AclWI GGATC 5 cut(s) 154, 167, 269, 282, 423
AcoI YGGCCR 1 cut(s) 461
AfaI GTAC 2 cut(s) 11, 170
AfiI CCNNNNNNNGG 2 cut(s) 31, 374
AgeI ACCGGT 1 cut(s) 424
AgsI TTSAA 3 cut(s) 323, 422, 481
AjuI GAANNNNNNNTTGG 2 cut(s) 226, 258
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
AlwI GGATC 5 cut(s) 154, 167, 269, 282, 423
AoxI GGCC 1 cut(s) 461
ApeKI GCWGC 2 cut(s) 196, 392
AsiGI ACCGGT 1 cut(s) 424
AspS9I GGNCC 2 cut(s) 22, 377
AsuC2I CCSGG 1 cut(s) 375
AvaII GGWCC 2 cut(s) 22, 377
BalI TGGCCA 1 cut(s) 463
BamHI GGATCC 2 cut(s) 159, 274
BbvI GCAGC 2 cut(s) 208, 379
BccI CCATC 2 cut(s) 85, 148
BceAI ACGGC 1 cut(s) 419
BcnI CCSGG 1 cut(s) 375
BfaI CTAG 2 cut(s) 150, 363
BglI GCCNNNNNGGC 1 cut(s) 460
BisI GCNGC 2 cut(s) 197, 393
BlsI GCNGC 2 cut(s) 198, 394
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 2 cut(s) 22, 377
BmgT120I GGNCC 2 cut(s) 22, 377
BmiI GGNNCC 2 cut(s) 161, 276
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 271, 463
Bpu10I CCTNAGC 2 cut(s) 270, 369
BpuMI CCSGG 1 cut(s) 375
Bsa29I ATCGAT 1 cut(s) 226
BsaBI GATNNNNATC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 31, 374
Bse118I RCCGGY 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 158
BseCI ATCGAT 1 cut(s) 226
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 3 cut(s) 77, 159, 478
BseJI GATNNNNATC 1 cut(s) 158
BseLI CCNNNNNNNGG 2 cut(s) 31, 374
BseMII CTCAG 2 cut(s) 214, 447
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 208, 379
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 463
BshTI ACCGGT 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 226
BsiSI CCGG 2 cut(s) 375, 425
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 31, 374
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 406
BsnI GGCC 1 cut(s) 463
Bsp143I GATC 5 cut(s) 90, 159, 227, 274, 415
Bsp68I TCGCGA 1 cut(s) 102
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 2 cut(s) 213, 448
BspDI ATCGAT 1 cut(s) 226
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 161, 276
BspPI GGATC 5 cut(s) 154, 167, 269, 282, 423
BsrFI RCCGGY 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 5 cut(s) 90, 159, 227, 274, 415
Bst4CI ACNGT 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 4 cut(s) 200, 270, 369, 456
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 3 cut(s) 77, 159, 478
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 5 cut(s) 93, 162, 230, 277, 418
BstMBI GATC 5 cut(s) 90, 159, 227, 274, 415
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 373
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 208, 379
BstX2I RGATCY 3 cut(s) 159, 274, 415
BstYI RGATCY 3 cut(s) 159, 274, 415
Bsu15I ATCGAT 1 cut(s) 226
BsuRI GGCC 1 cut(s) 463
BsuTUI ATCGAT 1 cut(s) 226
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 3 cut(s) 77, 159, 478
BtuMI TCGCGA 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 2 cut(s) 22, 377
ClaI ATCGAT 1 cut(s) 226
Csp6I GTAC 2 cut(s) 10, 169
CspAI ACCGGT 1 cut(s) 424
CviAII CATG 2 cut(s) 285, 337
CviJI RGCY 5 cut(s) 38, 199, 330, 373, 463
CviKI_1 RGCY 5 cut(s) 38, 199, 330, 373, 463
CviQI GTAC 2 cut(s) 10, 169
DdeI CTNAG 4 cut(s) 200, 270, 369, 456
DpnI GATC 5 cut(s) 92, 161, 229, 276, 417
DpnII GATC 5 cut(s) 90, 159, 227, 274, 415
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 461
EciI GGCGGA 1 cut(s) 235
Eco47I GGWCC 2 cut(s) 22, 377
EcoT22I ATGCAT 1 cut(s) 286
FaeI CATG 2 cut(s) 288, 340
FaqI GGGAC 1 cut(s) 199
FatI CATG 2 cut(s) 284, 336
Fnu4HI GCNGC 2 cut(s) 197, 393
FokI GGATG 3 cut(s) 64, 166, 485
Fsp4HI GCNGC 2 cut(s) 197, 393
FspBI CTAG 2 cut(s) 150, 363
GluI GCNGC 2 cut(s) 197, 393
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 463
HapII CCGG 2 cut(s) 375, 425
Hin1II CATG 2 cut(s) 288, 340
HpaII CCGG 2 cut(s) 375, 425
Hpy188I TCNGA 2 cut(s) 26, 309
Hpy188III TCNNGA 3 cut(s) 101, 278, 419
HpyAV CCTTC 2 cut(s) 259, 320
HpyCH4III ACNGT 1 cut(s) 348
HpyCH4V TGCA 4 cut(s) 196, 284, 288, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 4 cut(s) 200, 270, 369, 456
Hsp92II CATG 2 cut(s) 288, 340
Kzo9I GATC 5 cut(s) 90, 159, 227, 274, 415
LpnPI CCDG 7 cut(s) 24, 167, 291, 388, 438, 468, 480
Lsp1109I GCAGC 2 cut(s) 208, 379
LweI GCATC 2 cut(s) 271, 463
MaeI CTAG 2 cut(s) 150, 363
MaeIII GTNAC 1 cut(s) 298
MalI GATC 5 cut(s) 92, 161, 229, 276, 417
MboI GATC 5 cut(s) 90, 159, 227, 274, 415
MboII GAAGA 1 cut(s) 335
MflI RGATCY 3 cut(s) 159, 274, 415
MlsI TGGCCA 1 cut(s) 463
MluCI AATT 2 cut(s) 220, 289
MluNI TGGCCA 1 cut(s) 463
MnlI CCTC 4 cut(s) 24, 28, 91, 463
Mox20I TGGCCA 1 cut(s) 463
Mph1103I ATGCAT 1 cut(s) 286
MscI TGGCCA 1 cut(s) 463
MseI TTAA 2 cut(s) 62, 333
Msp20I TGGCCA 1 cut(s) 463
MspI CCGG 2 cut(s) 375, 425
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 406
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 460
NciI CCSGG 1 cut(s) 375
NdeII GATC 5 cut(s) 90, 159, 227, 274, 415
NlaIII CATG 2 cut(s) 288, 340
NlaIV GGNNCC 2 cut(s) 161, 276
NmuCI GTSAC 1 cut(s) 298
NruI TCGCGA 1 cut(s) 102
NsiI ATGCAT 1 cut(s) 286
NspI RCATGY 1 cut(s) 288
PaeI GCATGC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 424
PkrI GCNGC 2 cut(s) 198, 394
PspFI CCCAGC 1 cut(s) 38
PspN4I GGNNCC 2 cut(s) 161, 276
PspPI GGNCC 2 cut(s) 22, 377
PsuI RGATCY 3 cut(s) 159, 274, 415
RruI TCGCGA 1 cut(s) 102
RsaI GTAC 2 cut(s) 11, 170
RsaNI GTAC 2 cut(s) 10, 169
SaqAI TTAA 2 cut(s) 62, 333
SatI GCNGC 2 cut(s) 197, 393
Sau3AI GATC 5 cut(s) 90, 159, 227, 274, 415
Sau96I GGNCC 2 cut(s) 22, 377
ScrFI CCNGG 1 cut(s) 375
SetI ASST 4 cut(s) 201, 263, 370, 448
SfaNI GCATC 2 cut(s) 271, 463
SinI GGWCC 2 cut(s) 22, 377
SphI GCATGC 1 cut(s) 288
Sse9I AATT 2 cut(s) 220, 289
SsiI CCGC 1 cut(s) 246
SspMI CTAG 2 cut(s) 150, 363
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 48, 54, 226
TasI AATT 2 cut(s) 220, 289
TatI WGTACW 1 cut(s) 168
Tru1I TTAA 2 cut(s) 62, 333
Tru9I TTAA 2 cut(s) 62, 333
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 196, 392
Tsp45I GTSAC 1 cut(s) 298
VpaK11BI GGWCC 2 cut(s) 22, 377
XceI RCATGY 1 cut(s) 288
XspI CTAG 2 cut(s) 150, 363
Zsp2I ATGCAT 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.