Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Forward (+)

7795708 .. 7797425

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G22090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAGTCGCCGGGTGGAATACACGTTAGCTCCTCCGCAGAGGAATGAATCTGACGGTTTTGATTATCCCGACGGTATCCCAATATCATACAATCTTCATAGGCTTCGTCACTTTGAGTGTGAAGGCAGTTATCCCAAGTATCCTTATGGTTCTTTGGTCAAGTTTTATGCAATGGTGGGACTTCATCGTTACAATGTGTTGGAGGGGAAAAATTTGCAGCTCGATACCCTAAAGAGTTTCAACATGAGAATCAATTGTGGTGCTTCTTCTTACTACATTACTTTGGCTGCACGCGTTCCAGATAGCGGTTTGAAGCAGATCTTTCAGGTTCTAGTTCATGAAGAGCGTCTTGGCAGTTTAGACATGACATGTACTATCGCTAGACCTCGAGTGACTACCAATGTGCCTTTTCTACGTCCGCACAGCGAATCAGAGTATGATTATATGGACAATGATGAATTGCCTGACTGGCCTTCAGAGATTGCTTTCGATGATACAAAACGGTTTCATCTGGTGAAGGAATCAGAGTTGCGAGACAATGATTGGATTCGACTCTATTTGGAACTTACACTTGTTGCTCACGATAGGTTTCTTACAGTTCACTATCTCTCCCAGTTGGAGATTGTGAAAGTTGCGATTGAAGAAGTGGAGCAACCGAATGCGAGTCTCAACACCAAAACTACATTTGTCTACATAACTTATAAGGACTTGGCAAAGGCTCAGATTGGTGAGCCGGTTGATCGCAAAGCTATTGTTAGAAAAATCATCAATGAGACTACGGGACTCTTGAGACTCCGGGGTGATTATTGGAGTGGAGAAAGAAGTGTGATCACTCCGGAGGAGGAATATATGCTTCTCCATGGCGGAGAAAAAGTTCGAAACAATGAGCAGCGTTCTAAAAAACTTAAGCGTCGTGTAGGTGTTCATAGGCTATGGCGATGGTGGTACCAGGCTTACAAAAACCGTGGCCTCCGCTCGTCGTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVP_2 RVT_1 Retrotrans_gag rve

Protein Analysis

329

Amino Acids

38.64

Weight (kDa)

8.53

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
protein_MS5	PF04776	154 - 265	3.5e-36	Protein MS5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	702
Acc65I	GGTACC	1 cut(s)	945
AccB1I	GGYRCC	1 cut(s)	945
AccBSI	CCGCTC	1 cut(s)	975
AccI	GTMKAC	1 cut(s)	690
AccII	CGCG	1 cut(s)	294
AccIII	TCCGGA	1 cut(s)	835
AciI	CCGC	5 cut(s)	35, 306, 419, 864, 973
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	373, 947
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	905
AflIII	ACRYGT	3 cut(s)	21, 292, 368
AgsI	TTSAA	3 cut(s)	241, 313, 641
AjnI	CCWGG	1 cut(s)	948
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AloI	GAACNNNNNNTCC	2 cut(s)	858, 890
AluBI	AGCT	3 cut(s)	29, 220, 749
AluI	AGCT	3 cut(s)	29, 220, 749
Alw26I	GTCTC	4 cut(s)	528, 671, 767, 784
Ama87I	CYCGRG	1 cut(s)	387
Aor13HI	TCCGGA	1 cut(s)	835
AoxI	GGCC	2 cut(s)	470, 967
ApeKI	GCWGC	3 cut(s)	217, 287, 889
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	873
Asp718I	GGTACC	1 cut(s)	945
AsuC2I	CCSGG	2 cut(s)	11, 797
AsuHPI	GGTGA	3 cut(s)	526, 740, 812
AsuII	TTCGAA	1 cut(s)	877
AvaI	CYCGRG	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	945
BbvI	GCAGC	3 cut(s)	229, 274, 901
BccI	CCATC	1 cut(s)	933
BciT130I	CCWGG	1 cut(s)	950
BciVI	GTATCC	2 cut(s)	86, 150
BclI	TGATCA	1 cut(s)	828
BcnI	CCSGG	2 cut(s)	11, 797
BcoDI	GTCTC	4 cut(s)	528, 671, 767, 784
BfaI	CTAG	2 cut(s)	332, 381
BfrI	CTTAAG	1 cut(s)	905
BfuI	GTATCC	2 cut(s)	86, 150
BglI	GCCNNNNNGGC	1 cut(s)	469
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	3 cut(s)	218, 288, 890
BlsI	GCNGC	3 cut(s)	219, 289, 891
Bme1390I	CCNGG	3 cut(s)	11, 797, 950
BmeT110I	CYCGRG	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	947
BmrFI	CCNGG	3 cut(s)	11, 797, 950
BmrI	ACTGGG	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	607
Bpu14I	TTCGAA	1 cut(s)	877
BpuEI	CTTGAG	1 cut(s)	808
BpuMI	CCSGG	2 cut(s)	11, 797
BsaJI	CCNNGG	3 cut(s)	796, 859, 964
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	6 cut(s)	13, 43, 593, 623, 858, 888
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	733
Bse1I	ACTGG	2 cut(s)	473, 613
Bse3DI	GCAATG	1 cut(s)	177
BseAI	TCCGGA	1 cut(s)	835
BseBI	CCWGG	1 cut(s)	950
BseDI	CCNNGG	3 cut(s)	796, 859, 964
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	734
BseNI	ACTGG	2 cut(s)	473, 613
BseRI	GAGGAG	2 cut(s)	21, 854
BseXI	GCAGC	3 cut(s)	229, 274, 901
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	472, 969
BshNI	GGYRCC	1 cut(s)	945
BsiHKCI	CYCGRG	1 cut(s)	387
BsiSI	CCGG	4 cut(s)	10, 734, 796, 836
BslFI	GGGAC	2 cut(s)	192, 795
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	4 cut(s)	528, 671, 767, 784
BsmFI	GGGAC	2 cut(s)	192, 795
BsmI	GAATGC	1 cut(s)	664
BsnI	GGCC	2 cut(s)	472, 969
BsoBI	CYCGRG	1 cut(s)	387
Bsp119I	TTCGAA	1 cut(s)	877
Bsp13I	TCCGGA	1 cut(s)	835
Bsp143I	GATC	3 cut(s)	318, 739, 828
Bsp19I	CCATGG	1 cut(s)	859
BspACI	CCGC	5 cut(s)	35, 306, 419, 864, 973
BspANI	GGCC	2 cut(s)	472, 969
BspCNI	CTCAG	1 cut(s)	733
BspEI	TCCGGA	1 cut(s)	835
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	1 cut(s)	947
BspQI	GCTCTTC	1 cut(s)	336
BspT104I	TTCGAA	1 cut(s)	877
BspT107I	GGYRCC	1 cut(s)	945
BspTI	CTTAAG	1 cut(s)	905
BsrBI	CCGCTC	1 cut(s)	975
BsrDI	GCAATG	1 cut(s)	177
BsrFI	RCCGGY	1 cut(s)	733
BsrI	ACTGG	2 cut(s)	473, 613
BssAI	RCCGGY	1 cut(s)	733
BssECI	CCNNGG	3 cut(s)	796, 859, 964
BssMI	GATC	3 cut(s)	318, 739, 828
BssT1I	CCWWGG	1 cut(s)	859
Bst2UI	CCWGG	1 cut(s)	950
Bst4CI	ACNGT	5 cut(s)	56, 74, 504, 598, 965
Bst6I	CTCTTC	1 cut(s)	336
BstAFI	CTTAAG	1 cut(s)	905
BstBI	TTCGAA	1 cut(s)	877
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	1 cut(s)	720
BstDSI	CCRYGG	2 cut(s)	859, 964
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	321, 742, 831
BstMAI	GTCTC	4 cut(s)	528, 671, 767, 784
BstMBI	GATC	3 cut(s)	318, 739, 828
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNI	CCWGG	1 cut(s)	950
BstNSI	RCATGY	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	9, 795, 948
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	3 cut(s)	229, 274, 901
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	86, 150
BsuRI	GGCC	2 cut(s)	472, 969
BtgI	CCRYGG	2 cut(s)	859, 964
BtgZI	GCGATG	1 cut(s)	952
Cac8I	GCNNGC	1 cut(s)	292
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	733
CseI	GACGC	2 cut(s)	335, 899
Csp6I	GTAC	2 cut(s)	372, 946
CspCI	CAANNNNNGTGG	2 cut(s)	946, 981
CviAII	CATG	5 cut(s)	244, 338, 364, 369, 860
CviQI	GTAC	2 cut(s)	372, 946
DdeI	CTNAG	1 cut(s)	720
DpnI	GATC	3 cut(s)	320, 741, 830
DpnII	GATC	3 cut(s)	318, 739, 828
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EciI	GGCGGA	1 cut(s)	879
Eco130I	CCWWGG	1 cut(s)	859
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	948
EcoT14I	CCWWGG	1 cut(s)	859
ErhI	CCWWGG	1 cut(s)	859
FaeI	CATG	5 cut(s)	247, 341, 367, 372, 863
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 333, 365
FaqI	GGGAC	2 cut(s)	192, 795
FatI	CATG	5 cut(s)	243, 337, 363, 368, 859
FbaI	TGATCA	1 cut(s)	828
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	3 cut(s)	218, 288, 890
Fsp4HI	GCNGC	3 cut(s)	218, 288, 890
FspBI	CTAG	2 cut(s)	332, 381
GluI	GCNGC	3 cut(s)	218, 288, 890
HaeIII	GGCC	2 cut(s)	472, 969
HapII	CCGG	4 cut(s)	10, 734, 796, 836
HgaI	GACGC	2 cut(s)	335, 899
Hin1II	CATG	5 cut(s)	247, 341, 367, 372, 863
HpaII	CCGG	4 cut(s)	10, 734, 796, 836
HphI	GGTGA	3 cut(s)	526, 740, 812
Hpy166II	GTNNAC	2 cut(s)	601, 691
Hpy188I	TCNGA	5 cut(s)	52, 433, 478, 526, 723
Hpy188III	TCNNGA	6 cut(s)	68, 299, 338, 581, 787, 836
Hpy8I	GTNNAC	2 cut(s)	601, 691
Hpy99I	CGWCG	3 cut(s)	74, 915, 982
HpyAV	CCTTC	3 cut(s)	116, 483, 511
HpyCH4III	ACNGT	5 cut(s)	56, 74, 504, 598, 965
HpyCH4IV	ACGT	2 cut(s)	23, 415
HpyCH4V	TGCA	3 cut(s)	170, 217, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	1 cut(s)	720
HpySE526I	ACGT	2 cut(s)	23, 415
Hsp92II	CATG	5 cut(s)	247, 341, 367, 372, 863
Kpn2I	TCCGGA	1 cut(s)	835
KpnI	GGTACC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	828
Kzo9I	GATC	3 cut(s)	318, 739, 828
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	34, 649
Lsp1109I	GCAGC	3 cut(s)	229, 274, 901
MaeI	CTAG	2 cut(s)	332, 381
MaeII	ACGT	2 cut(s)	23, 415
MaeIII	GTNAC	3 cut(s)	107, 188, 391
MalI	GATC	3 cut(s)	320, 741, 830
MbiI	CCGCTC	1 cut(s)	975
MboI	GATC	3 cut(s)	318, 739, 828
MboII	GAAGA	4 cut(s)	86, 258, 353, 653
MfeI	CAATTG	1 cut(s)	253
MflI	RGATCY	1 cut(s)	318
MluCI	AATT	3 cut(s)	211, 253, 458
MluI	ACGCGT	1 cut(s)	292
MlyI	GAGTC	5 cut(s)	13, 546, 673, 777, 786
MmeI	TCCRAC	2 cut(s)	180, 597
MnlI	CCTC	7 cut(s)	33, 42, 196, 396, 832, 835, 980
MroI	TCCGGA	1 cut(s)	835
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	2 cut(s)	906, 988
MspCI	CTTAAG	1 cut(s)	905
MspI	CCGG	4 cut(s)	10, 734, 796, 836
MspR9I	CCNGG	3 cut(s)	11, 797, 950
MunI	CAATTG	1 cut(s)	253
Mva1269I	GAATGC	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	950
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	469
NciI	CCSGG	2 cut(s)	11, 797
NcoI	CCATGG	1 cut(s)	859
NdeII	GATC	3 cut(s)	318, 739, 828
NlaIII	CATG	5 cut(s)	247, 341, 367, 372, 863
NlaIV	GGNNCC	1 cut(s)	947
NmuCI	GTSAC	2 cut(s)	107, 391
NspI	RCATGY	1 cut(s)	372
NspV	TTCGAA	1 cut(s)	877
PaeR7I	CTCGAG	1 cut(s)	387
PagI	TCATGA	1 cut(s)	337
PciI	ACATGT	1 cut(s)	368
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	5 cut(s)	47, 249, 428, 521, 547
PkrI	GCNGC	3 cut(s)	219, 289, 891
PleI	GAGTC	5 cut(s)	12, 546, 672, 777, 786
PpsI	GAGTC	5 cut(s)	12, 546, 672, 777, 786
PscI	ACATGT	1 cut(s)	368
PsiI	TTATAA	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	948
PspGI	CCWGG	1 cut(s)	948
PspN4I	GGNNCC	1 cut(s)	947
PspXI	VCTCGAGB	1 cut(s)	387
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	2 cut(s)	373, 947
RsaNI	GTAC	2 cut(s)	372, 946
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	906, 988
SatI	GCNGC	3 cut(s)	218, 288, 890
Sau3AI	GATC	3 cut(s)	318, 739, 828
SchI	GAGTC	5 cut(s)	13, 546, 673, 777, 786
ScrFI	CCNGG	3 cut(s)	11, 797, 950
SetI	ASST	9 cut(s)	26, 31, 222, 330, 388, 418, 590, 751, 922
Sfr274I	CTCGAG	1 cut(s)	387
SfuI	TTCGAA	1 cut(s)	877
SlaI	CTCGAG	1 cut(s)	387
SmlI	CTYRAG	3 cut(s)	387, 787, 905
SmoI	CTYRAG	3 cut(s)	387, 787, 905
Sse9I	AATT	3 cut(s)	211, 253, 458
SsiI	CCGC	5 cut(s)	35, 306, 419, 864, 973
SspMI	CTAG	2 cut(s)	332, 381
StyD4I	CCNGG	3 cut(s)	9, 795, 948
StyI	CCWWGG	1 cut(s)	859
TaaI	ACNGT	5 cut(s)	56, 74, 504, 598, 965
TaiI	ACGT	2 cut(s)	26, 418
TaqI	TCGA	5 cut(s)	222, 388, 489, 550, 877
TasI	AATT	3 cut(s)	211, 253, 458
TatI	WGTACW	1 cut(s)	371
TfiI	GAWTC	5 cut(s)	47, 249, 428, 521, 547
Tru1I	TTAA	2 cut(s)	906, 988
Tru9I	TTAA	2 cut(s)	906, 988
TseFI	GTSAC	2 cut(s)	107, 391
TseI	GCWGC	3 cut(s)	217, 287, 889
Tsp45I	GTSAC	2 cut(s)	107, 391
TspDTI	ATGAA	8 cut(s)	60, 86, 173, 326, 354, 471, 497, 914
Vha464I	CTTAAG	1 cut(s)	905
XapI	RAATTY	1 cut(s)	211
XceI	RCATGY	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	387
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	2 cut(s)	332, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.