AT4G17990

histone demethylase activity (H3-K9 specific)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001976
Physical Location & Seq
Reverse (-)
9984386 .. 9985805
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G17990.1

Sequence Viewer

Length: 525 bp
ATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAGTGGCGGAATCTCAGGGGTTCGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGTTTGCTCGACTATCAAAATTCTGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGGATCCATAAATACAATATGTTACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGCAATTCACGAATTACCACAGTATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCATCTGCTGGCGGTTCCCTTGTAACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAAATCAATACCCTCACGGTCTATCTTGCAAGACTTAAGTCGCAACCACCACCAGATGAAGAAATCGGAGGTGCGAAAACAGGACTGGGTTCGTCTATACTTGGAACTTGCATTCATCCATGCAAATCAGTGTCTTCCAAATCCCAATCTATCAAAATTGGTTATTTTGAAGGTAGCTGTAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000118 GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0003712 GO:0003714 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0016604 GO:0019219 GO:0019222 GO:0019538 GO:0019899 GO:0022607 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0032991 GO:0033169 GO:0035257 GO:0036211 GO:0042809 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043433 GO:0043565 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0046966 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051259 GO:0051276 GO:0051291 GO:0051427 GO:0060255 GO:0065003 GO:0065007 GO:0065009 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1901363 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04714 map04714
Pfam Domains
Protein Families
JmjC

Protein Analysis

174

Amino Acids

19.32

Weight (kDa)

5.8

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 2 cut(s) 44, 288
AclWI GGATC 4 cut(s) 154, 167, 269, 282
AcsI RAATTY 2 cut(s) 115, 190
AcuI CTGAAG 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 156, 284
AflII CTTAAG 1 cut(s) 371
AgsI TTSAA 1 cut(s) 506
AluBI AGCT 2 cut(s) 199, 513
AluI AGCT 2 cut(s) 199, 513
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 4 cut(s) 154, 167, 269, 282
Ama87I CYCGRG 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 2 cut(s) 115, 190
AvaI CYCGRG 1 cut(s) 36
BamHI GGATCC 2 cut(s) 159, 274
BbsI GAAGAC 4 cut(s) 12, 130, 333, 462
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 70, 286
BcoDI GTCTC 1 cut(s) 39
BfmI CTRYAG 1 cut(s) 514
BfrI CTTAAG 1 cut(s) 371
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
BmeT110I CYCGRG 1 cut(s) 36
BmiI GGNNCC 3 cut(s) 161, 276, 292
BmrI ACTGGG 1 cut(s) 431
BmuI ACTGGG 1 cut(s) 431
BoxI GACNNNNGTC 1 cut(s) 373
BpiI GAAGAC 4 cut(s) 12, 130, 333, 462
Bpu10I CCTNAGC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 284
Bse1I ACTGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 2 cut(s) 85, 451
BseLI CCNNNNNNNGG 2 cut(s) 156, 284
BseMII CTCAG 2 cut(s) 65, 214
BseNI ACTGG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 208
BsgI GTGCAG 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 156, 284
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 199
BsmI GAATGC 1 cut(s) 447
Bso31I GGTCTC 1 cut(s) 39
BsoBI CYCGRG 1 cut(s) 36
Bsp143I GATC 2 cut(s) 159, 274
BspACI CCGC 2 cut(s) 44, 288
BspCNI CTCAG 2 cut(s) 64, 213
BspLI GGNNCC 3 cut(s) 161, 276, 292
BspPI GGATC 4 cut(s) 154, 167, 269, 282
BspTI CTTAAG 1 cut(s) 371
BspTNI GGTCTC 1 cut(s) 39
BsrI ACTGG 1 cut(s) 426
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 159, 274
BssT1I CCWWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 238, 355
BstAFI CTTAAG 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 3 cut(s) 51, 200, 270
BstF5I GGATG 2 cut(s) 85, 451
BstKTI GATC 2 cut(s) 162, 277
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 2 cut(s) 159, 274
BstPAI GACNNNNGTC 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 514
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 4 cut(s) 12, 130, 333, 462
BstX2I RGATCY 2 cut(s) 159, 274
BstYI RGATCY 2 cut(s) 159, 274
BtsCI GGATG 2 cut(s) 85, 451
BtsIMutI CAGTG 2 cut(s) 129, 471
Cac8I GCNNGC 1 cut(s) 286
CviAII CATG 1 cut(s) 456
CviJI RGCY 2 cut(s) 199, 513
CviKI_1 RGCY 2 cut(s) 199, 513
DdeI CTNAG 3 cut(s) 51, 200, 270
DpnI GATC 2 cut(s) 161, 276
DpnII GATC 2 cut(s) 159, 274
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 312
FaeI CATG 1 cut(s) 459
FaiI YATR 8 cut(s) 165, 176, 209, 241, 255, 257, 434, 457
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 199
FatI CATG 1 cut(s) 455
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 2 cut(s) 92, 438
Fsp4HI GCNGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 197
Hin1II CATG 1 cut(s) 459
HinfI GANTC 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 3 cut(s) 121, 309, 404
Hpy188III TCNNGA 3 cut(s) 36, 225, 323
Hpy8I GTNNAC 1 cut(s) 322
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 2 cut(s) 238, 355
HpyCH4V TGCA 7 cut(s) 21, 196, 207, 219, 365, 447, 459
HpyF3I CTNAG 3 cut(s) 51, 200, 270
Hsp92II CATG 1 cut(s) 459
Kzo9I GATC 2 cut(s) 159, 274
LpnPI CCDG 6 cut(s) 38, 167, 270, 402, 402, 407
Lsp1109I GCAGC 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 177, 248, 298
MalI GATC 2 cut(s) 161, 276
MboI GATC 2 cut(s) 159, 274
MboII GAAGA 5 cut(s) 17, 130, 338, 407, 462
MflI RGATCY 2 cut(s) 159, 274
MluCI AATT 5 cut(s) 115, 190, 220, 228, 492
MnlI CCTC 2 cut(s) 359, 398
MseI TTAA 2 cut(s) 144, 372
MspCI CTTAAG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 447
NdeII GATC 2 cut(s) 159, 274
NlaIII CATG 1 cut(s) 459
NlaIV GGNNCC 3 cut(s) 161, 276, 292
PaeR7I CTCGAG 1 cut(s) 36
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 1 cut(s) 198
PshAI GACNNNNGTC 1 cut(s) 373
PspN4I GGNNCC 3 cut(s) 161, 276, 292
PsuI RGATCY 2 cut(s) 159, 274
SaqAI TTAA 2 cut(s) 144, 372
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 2 cut(s) 159, 274
SetI ASST 5 cut(s) 201, 318, 409, 511, 515
SfcI CTRYAG 1 cut(s) 514
Sfr274I CTCGAG 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 36
SmlI CTYRAG 2 cut(s) 36, 371
SmoI CTYRAG 2 cut(s) 36, 371
Sse9I AATT 5 cut(s) 115, 190, 220, 228, 492
SsiI CCGC 2 cut(s) 44, 288
StyI CCWWGG 1 cut(s) 312
TaaI ACNGT 2 cut(s) 238, 355
TaqI TCGA 4 cut(s) 37, 60, 105, 126
TasI AATT 5 cut(s) 115, 190, 220, 228, 492
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 144, 372
Tru9I TTAA 2 cut(s) 144, 372
TscAI CASTG 2 cut(s) 136, 471
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 2 cut(s) 408, 440
TspRI CASTG 2 cut(s) 136, 471
Van91I CCANNNNNTGG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 371
XapI RAATTY 2 cut(s) 115, 190
XhoI CTCGAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.