AT4G28920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001976
Physical Location & Seq
Reverse (-)
14268415 .. 14269885
1471 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G28920.1

Sequence Viewer

Length: 879 bp
ATGTCGGAGAACGATAGTAGCGAGAGTGATATTGAAATGGACCCTGAAGAAGAAAAAGTGTATAGACGGCAAGTTGAAGAGTCCGATGGTTTTGATGTTGATTACTTTAGATATGCTGGGATAAAGCCCTGTCCATTGAAAGATGAGAATGCTTATACTTATGATATCGAACTTTTTGGAAGATTGGGACTTCACTGTTACAATCTTCTTCACGAGGGAACCAACCTCAAACTCATGTGCATTCCCAAGTACAACACTAATAACATTGGGGTAAGTTCTGGGGACTACTACTACATAACGTTGGAGGCAATAGACACATACAACAACTCTCCATGCACTTTTCAAACGTACGTAAGTGAATGGTATCAAACTTCAGAACATGGATACCTTGTGGTAGAGACATATATTGCTAGATTAAAAGGTCCTACTGGCCCTCATAATACTTGTATTGGACGTGGGTGGATATGGGGATGGGAAGAGGAGGCCATCGATGTTTACTACAAAGGTAAACTGCCTAAGTGGTTGACAAAAGATTTGTTGGCTGCAGCCAAGGATGAATACTATGTGGTGCAAGAATCAGACATTCTAGAAAATGAGTGGCTTCATCTGTATGCTGAGATTGCATTGTACTCCAACTGGAAATGGCATGCGACTCGGAAGAGCTGTGAAGAGTCGCCGCACTTGAAGCTCAAGGCCAACAACGCTATCTTCTACATGGGTTTCAAGGGCAGTGGTGATCATCATCCGAGTGGTAAGCATGTCGAGTACCAAACAATAGTACGGAAAGCCATGGATGGAAAACCGGGACACATTCGTCTAGAAGTTGACTCTTGGCAAGCCATACCAAGCGATTTAATTGGGGAGGATGAACCGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TamB

Protein Analysis

292

Amino Acids

33.79

Weight (kDa)

4.91

Isoelectric Point (pI)

42.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 171 - 273 1.7e-26 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 813
AciI CCGC 2 cut(s) 677, 872
AclI AACGTT 1 cut(s) 299
AcuI CTGAAG 2 cut(s) 66, 357
AfaI GTAC 5 cut(s) 251, 350, 629, 767, 780
AgsI TTSAA 6 cut(s) 35, 77, 139, 344, 685, 724
AjiI CACGTC 1 cut(s) 455
AluBI AGCT 2 cut(s) 663, 688
AluI AGCT 2 cut(s) 663, 688
Alw26I GTCTC 1 cut(s) 392
AoxI GGCC 3 cut(s) 430, 483, 693
ApeKI GCWGC 2 cut(s) 542, 545
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AspS9I GGNCC 3 cut(s) 40, 422, 431
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 1 cut(s) 746
AvaII GGWCC 2 cut(s) 40, 422
BauI CACGAG 1 cut(s) 212
BbvI GCAGC 2 cut(s) 529, 557
BccI CCATC 4 cut(s) 80, 465, 494, 788
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciVI GTATCC 1 cut(s) 377
BclI TGATCA 1 cut(s) 736
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 4 cut(s) 411, 587, 818, 877
BfmI CTRYAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 377
BisI GCNGC 3 cut(s) 543, 546, 677
BlsI GCNGC 3 cut(s) 544, 547, 678
Bme1390I CCNGG 1 cut(s) 804
Bme18I GGWCC 2 cut(s) 40, 422
BmgBI CACGTC 1 cut(s) 455
BmgT120I GGNCC 3 cut(s) 40, 422, 431
BmiI GGNNCC 2 cut(s) 42, 220
BmrFI CCNGG 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 804
Bsa29I ATCGAT 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 352
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 2 cut(s) 549, 789
Bse1I ACTGG 2 cut(s) 433, 641
Bse8I GATNNNNATC 1 cut(s) 741
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 549, 789
BseGI GGATG 5 cut(s) 476, 559, 742, 799, 871
BseJI GATNNNNATC 1 cut(s) 741
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 433, 641
BseRI GAGGAG 1 cut(s) 494
BseXI GCAGC 2 cut(s) 529, 557
BseYI CCCAGC 1 cut(s) 116
BshFI GGCC 3 cut(s) 432, 485, 695
BshVI ATCGAT 1 cut(s) 489
BsiSI CCGG 1 cut(s) 803
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 3 cut(s) 201, 296, 819
BsmAI GTCTC 1 cut(s) 392
BsmFI GGGAC 3 cut(s) 201, 296, 819
BsmI GAATGC 2 cut(s) 154, 240
BsnI GGCC 3 cut(s) 432, 485, 695
Bsp143I GATC 1 cut(s) 736
Bsp19I CCATGG 1 cut(s) 789
BspACI CCGC 2 cut(s) 677, 872
BspANI GGCC 3 cut(s) 432, 485, 695
BspCNI CTCAG 1 cut(s) 607
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 2 cut(s) 42, 220
BspMAI CTGCAG 1 cut(s) 547
BspQI GCTCTTC 1 cut(s) 653
BsrI ACTGG 2 cut(s) 433, 641
BssECI CCNNGG 2 cut(s) 549, 789
BssMI GATC 1 cut(s) 736
BssSI CACGAG 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 549, 789
Bst2BI CACGAG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 4 cut(s) 72, 471, 653, 663
BstBAI YACGTR 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 648, 837
BstDEI CTNAG 2 cut(s) 516, 615
BstDSI CCRYGG 1 cut(s) 789
BstF5I GGATG 5 cut(s) 476, 559, 742, 799, 871
BstKTI GATC 1 cut(s) 739
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 1 cut(s) 736
BstMWI GCNNNNNNNGC 3 cut(s) 620, 685, 701
BstNSI RCATGY 2 cut(s) 650, 761
BstSCI CCNGG 1 cut(s) 802
BstSFI CTRYAG 1 cut(s) 543
BstSNI TACGTA 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 529, 557
Bsu15I ATCGAT 1 cut(s) 489
BsuI GTATCC 1 cut(s) 377
BsuRI GGCC 3 cut(s) 432, 485, 695
BsuTUI ATCGAT 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 455
BtsCI GGATG 5 cut(s) 476, 559, 742, 799, 871
BtsI GCAGTG 1 cut(s) 736
BtsIMutI CAGTG 2 cut(s) 193, 736
Cac8I GCNNGC 2 cut(s) 648, 837
Cfr13I GGNCC 3 cut(s) 40, 422, 431
ClaI ATCGAT 1 cut(s) 489
Csp6I GTAC 5 cut(s) 250, 349, 628, 766, 779
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 7 cut(s) 235, 333, 380, 647, 715, 758, 790
CviQI GTAC 5 cut(s) 250, 349, 628, 766, 779
DdeI CTNAG 2 cut(s) 516, 615
DpnI GATC 1 cut(s) 738
DpnII GATC 1 cut(s) 736
DrdI GACNNNNNNGTC 1 cut(s) 813
DseDI GACNNNNNNGTC 1 cut(s) 813
Eam1104I CTCTTC 4 cut(s) 72, 471, 653, 663
EarI CTCTTC 4 cut(s) 72, 471, 653, 663
Eco105I TACGTA 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 549, 789
Eco32I GATATC 1 cut(s) 166
Eco47I GGWCC 2 cut(s) 40, 422
Eco57I CTGAAG 2 cut(s) 66, 357
EcoO109I RGGNCCY 1 cut(s) 422
EcoRV GATATC 1 cut(s) 166
EcoT14I CCWWGG 2 cut(s) 549, 789
ErhI CCWWGG 2 cut(s) 549, 789
FaeI CATG 7 cut(s) 238, 336, 383, 650, 718, 761, 793
FaqI GGGAC 3 cut(s) 201, 296, 819
FatI CATG 7 cut(s) 234, 332, 379, 646, 714, 757, 789
FbaI TGATCA 1 cut(s) 736
Fnu4HI GCNGC 3 cut(s) 543, 546, 677
FokI GGATG 4 cut(s) 483, 566, 729, 806
Fsp4HI GCNGC 3 cut(s) 543, 546, 677
FspBI CTAG 4 cut(s) 411, 587, 818, 877
GluI GCNGC 3 cut(s) 543, 546, 677
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 432, 485, 695
HapII CCGG 1 cut(s) 803
Hin1II CATG 7 cut(s) 238, 336, 383, 650, 718, 761, 793
HincII GTYRAC 2 cut(s) 525, 826
HindII GTYRAC 2 cut(s) 525, 826
HinfI GANTC 5 cut(s) 80, 575, 652, 671, 827
HpaII CCGG 1 cut(s) 803
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 4 cut(s) 496, 509, 525, 826
Hpy188I TCNGA 6 cut(s) 7, 85, 376, 580, 657, 747
Hpy188III TCNNGA 3 cut(s) 212, 587, 818
Hpy8I GTNNAC 4 cut(s) 496, 509, 525, 826
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 4 cut(s) 299, 347, 351, 454
HpyCH4V TGCA 5 cut(s) 240, 336, 545, 571, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 620, 685, 701
HpyF3I CTNAG 2 cut(s) 516, 615
HpySE526I ACGT 4 cut(s) 299, 347, 351, 454
Hsp92II CATG 7 cut(s) 238, 336, 383, 650, 718, 761, 793
Ksp22I TGATCA 1 cut(s) 736
Kzo9I GATC 1 cut(s) 736
LguI GCTCTTC 1 cut(s) 653
LpnPI CCDG 7 cut(s) 57, 102, 142, 264, 414, 622, 816
Lsp1109I GCAGC 2 cut(s) 529, 557
MaeI CTAG 4 cut(s) 411, 587, 818, 877
MaeII ACGT 4 cut(s) 299, 347, 351, 454
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 738
MboI GATC 1 cut(s) 736
MluCI AATT 1 cut(s) 855
MlyI GAGTC 4 cut(s) 89, 646, 680, 821
MmeI TCCRAC 2 cut(s) 282, 657
MnlI CCTC 7 cut(s) 208, 236, 298, 444, 472, 475, 856
MseI TTAA 2 cut(s) 416, 854
MslI CAYNNNNRTG 2 cut(s) 609, 747
MspI CCGG 1 cut(s) 803
MspR9I CCNGG 1 cut(s) 804
Mva1269I GAATGC 2 cut(s) 154, 240
MwoI GCNNNNNNNGC 3 cut(s) 620, 685, 701
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 789
NdeII GATC 1 cut(s) 736
NlaIII CATG 7 cut(s) 238, 336, 383, 650, 718, 761, 793
NlaIV GGNNCC 2 cut(s) 42, 220
NspI RCATGY 2 cut(s) 650, 761
PaeI GCATGC 1 cut(s) 650
PciSI GCTCTTC 1 cut(s) 653
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 2 cut(s) 154, 240
PfeI GAWTC 1 cut(s) 575
Pfl23II CGTACG 1 cut(s) 348
PkrI GCNGC 3 cut(s) 544, 547, 678
PleI GAGTC 4 cut(s) 88, 646, 679, 821
PpsI GAGTC 4 cut(s) 88, 646, 679, 821
Ppu21I YACGTR 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 422
Psp1406I AACGTT 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 116
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 42, 220
PspPI GGNCC 3 cut(s) 40, 422, 431
PspPPI RGGWCCY 1 cut(s) 422
PstI CTGCAG 1 cut(s) 547
RsaI GTAC 5 cut(s) 251, 350, 629, 767, 780
RsaNI GTAC 5 cut(s) 250, 349, 628, 766, 779
RseI CAYNNNNRTG 2 cut(s) 609, 747
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 2 cut(s) 416, 854
SatI GCNGC 3 cut(s) 543, 546, 677
Sau3AI GATC 1 cut(s) 736
Sau96I GGNCC 3 cut(s) 40, 422, 431
SchI GAGTC 4 cut(s) 89, 646, 680, 821
ScrFI CCNGG 1 cut(s) 804
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 2 cut(s) 40, 422
SmiMI CAYNNNNRTG 2 cut(s) 609, 747
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SnaBI TACGTA 1 cut(s) 352
SphI GCATGC 1 cut(s) 650
Sse9I AATT 1 cut(s) 855
SsiI CCGC 2 cut(s) 677, 872
SspMI CTAG 4 cut(s) 411, 587, 818, 877
StyD4I CCNGG 1 cut(s) 802
StyI CCWWGG 2 cut(s) 549, 789
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 4 cut(s) 302, 350, 354, 457
TaqI TCGA 3 cut(s) 168, 489, 762
TasI AATT 1 cut(s) 855
TatI WGTACW 2 cut(s) 249, 627
TauI GCSGC 1 cut(s) 679
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 2 cut(s) 416, 854
Tru9I TTAA 2 cut(s) 416, 854
TscAI CASTG 2 cut(s) 200, 736
TseI GCWGC 2 cut(s) 542, 545
TspDTI ATGAA 2 cut(s) 570, 593
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 2 cut(s) 200, 736
VpaK11BI GGWCC 2 cut(s) 40, 422
XbaI TCTAGA 2 cut(s) 586, 817
XceI RCATGY 2 cut(s) 650, 761
XspI CTAG 4 cut(s) 411, 587, 818, 877
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.