Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

8648099 .. 8648694

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24388.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGGCCGGGGCAGAGGAGAGGGAGAAGAGCAATCCTCGGAAAAGATATAGGATAGTGAATAGATCCGCGAGTTCCTTTATAAAGAGAGTACCACACTTTGGTGGAAATGAAACAATCTGTAACGATGAGTCTTCTCCATGTCCTGCCTTGGTTATCCTTTATGCCAGGCTCGGCCTTCATCCGTACAATTTGCTCCAGGAGAAAAACTTAGAGCTCAGTAGCGTAAAGAAATACAACCAGTCCACGCATTCTGCTGCTTGCTCTTACCACATTACTTTGGACACCATTGGTCTCACCGCTCTTCAACATTTTGAGACTTCAGTTTATGAAATATCCTCTGGCAAATTAGCTTTATCGTGCCGAATTGCTAGACCTCTAGGTGATTACGAGACTATTTGTGGTGGTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1

Protein Analysis

137

Amino Acids

15.15

Weight (kDa)

8.62

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AccB7I	CCANNNNNTGG	1 cut(s)	101
AccBSI	CCGCTC	1 cut(s)	302
AccII	CGCG	1 cut(s)	71
AciI	CCGC	2 cut(s)	69, 300
AclWI	GGATC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	93, 188
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	2 cut(s)	167, 198
AleI	CACNNNNGTG	1 cut(s)	102
AluBI	AGCT	2 cut(s)	217, 353
AluI	AGCT	2 cut(s)	217, 353
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	299, 311, 386
AlwI	GGATC	1 cut(s)	60
AoxI	GGCC	2 cut(s)	6, 175
ApeKI	GCWGC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	289, 395
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	169, 200
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	299, 311, 386
BfaI	CTAG	2 cut(s)	372, 380
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	3 cut(s)	10, 169, 200
BmrFI	CCNGG	3 cut(s)	10, 169, 200
BpiI	GAAGAC	1 cut(s)	126
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	182
BpuMI	CCSGG	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	3 cut(s)	9, 38, 150
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	169, 200
BseDI	CCNNGG	3 cut(s)	9, 38, 150
BseGI	GGATG	1 cut(s)	181
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	244
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	2 cut(s)	8, 177
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmAI	GTCTC	3 cut(s)	299, 311, 386
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	2 cut(s)	8, 177
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	65
BspACI	CCGC	2 cut(s)	69, 300
BspANI	GGCC	2 cut(s)	8, 177
BspCNI	CTCAG	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	71
BspPI	GGATC	1 cut(s)	60
BspQI	GCTCTTC	2 cut(s)	23, 309
BspTNI	GGTCTC	1 cut(s)	299
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	9, 38, 150
BssMI	GATC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	169, 200
Bst6I	CTCTTC	2 cut(s)	23, 309
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	3 cut(s)	211, 218, 411
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	68
BstMAI	GTCTC	3 cut(s)	299, 311, 386
BstMBI	GATC	1 cut(s)	65
BstNI	CCWGG	2 cut(s)	169, 200
BstSCI	CCNGG	3 cut(s)	8, 167, 198
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	244
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	8, 177
BtsCI	GGATG	1 cut(s)	181
Cac8I	GCNNGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	92, 187
CviAII	CATG	1 cut(s)	141
CviJI	RGCY	5 cut(s)	8, 172, 177, 217, 353
CviKI_1	RGCY	5 cut(s)	8, 172, 177, 217, 353
CviQI	GTAC	2 cut(s)	92, 187
DdeI	CTNAG	3 cut(s)	211, 218, 411
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	23, 309
EarI	CTCTTC	2 cut(s)	23, 309
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	150
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	299
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	306
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	167, 198
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	144
FaiI	YATR	5 cut(s)	51, 83, 142, 165, 330
FatI	CATG	1 cut(s)	140
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	168
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	2 cut(s)	372, 380
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	2 cut(s)	8, 177
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	1 cut(s)	144
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	289, 395
Hpy166II	GTNNAC	1 cut(s)	246
Hpy188I	TCNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	246
HpyAV	CCTTC	1 cut(s)	188
HpyF3I	CTNAG	3 cut(s)	211, 218, 411
Hsp92II	CATG	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	65
LguI	GCTCTTC	2 cut(s)	23, 309
LmnI	GCTCC	1 cut(s)	201
LpnPI	CCDG	8 cut(s)	22, 154, 159, 181, 185, 212, 254, 327
Lsp1109I	GCAGC	1 cut(s)	244
MaeI	CTAG	2 cut(s)	372, 380
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	1 cut(s)	67
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	65
MboII	GAAGA	3 cut(s)	40, 126, 296
MflI	RGATCY	1 cut(s)	65
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	190, 347, 366
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	10, 15, 48, 349, 387
MslI	CAYNNNNRTG	1 cut(s)	102
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	3 cut(s)	10, 169, 200
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	2 cut(s)	169, 200
MvnI	CGCG	1 cut(s)	71
NciI	CCSGG	1 cut(s)	10
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	153
OliI	CACNNNNGTG	1 cut(s)	102
PciSI	GCTCTTC	2 cut(s)	23, 309
PctI	GAATGC	1 cut(s)	250
PflMI	CCANNNNNTGG	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	2 cut(s)	167, 198
PspGI	CCWGG	2 cut(s)	167, 198
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	2 cut(s)	93, 188
RsaNI	GTAC	2 cut(s)	92, 187
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	2 cut(s)	23, 309
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	3 cut(s)	10, 169, 200
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	219, 355, 379, 385
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	3 cut(s)	190, 347, 366
SsiI	CCGC	2 cut(s)	69, 300
SspMI	CTAG	2 cut(s)	372, 380
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	3 cut(s)	8, 167, 198
StyI	CCWWGG	1 cut(s)	150
TasI	AATT	3 cut(s)	190, 347, 366
TseI	GCWGC	1 cut(s)	257
TspDTI	ATGAA	3 cut(s)	126, 170, 345
TspGWI	ACGGA	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	101
XspI	CTAG	2 cut(s)	372, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.