AT4G29550

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
14502212 .. 14503847
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29550.1

Sequence Viewer

Length: 1077 bp
ATGGAAGCAGTCGATCGACCGCTGCGCATTGAAGAAACCACCGTATCTCATGATGTATCTAGTTGCGGTTTTATATCGAAAGAAGAATGGTTAAATAAACATCCACCATCTGGATCTGGATGGACTGACGAAGATGATGATAATGACGATGTATTTAGTAGCAGTTTTATATCGAAAGAAGAATTGTCTGACGCTGTACATAACGATCCACCATCTGGATGGACTGACGAAGATGATGATGATCAGGTTGACCCGGCTTTGGAGAAAGAGTTCTATCGCCAAATTCGCGAATCCGACGGATTTGATGTTGACATACGTATTCCGACTAGTTCACTTTATGTGTACAAATGTGCCAACAATGATGACCTTCGTGGTGACATTGTTGGCATTTGTGCTAGAGTGGGACTCCATTGGTACAACTTTCAAAAGGGCTCAAACCTTGAGTTGATGCACGTCGATAAATATAATTCTAGATTCTGTGCGCTTATGACTTACAACATTACTGCTGAGGCTGTTGATCCAGCCAACGATTCACGTTTCACTTTCCAGACATGTGTTACCAGAGCTACATGTCAAAAAGATGAAGACCTGAGGATACTGACTGAAGTCTGTAGAATTAAACCAAAGATTCAAGGTACTGGAGACGAAATAAAGCGATGGAATGACGAAGCTATTGATGATATCTACAAAGGCAATCTACCTGAGTGGATTTCGGATGATACTTTGATGTCATGCAGTGAGCAAGATCACTTTTATAGGGTGCAAGAGTCAGACATCCGAGAACACAACTGGCTTCAACTATACACTGAGATTGCGTCTTACTCGCTGTGGGAAGGAGACATGAGGCTCAAGTCTTGTGTGCCGCTGCAGATTAAGAATGTCCTTGTACGAACTCGTGAAGATTTTAAATCAAAGGAAAAGCTCAAGGCTGGGAATGCCATCTTCTACATTAGTTTTAGGGGTGTCAATACTCCTCATGGTCCACCTCAAGATCACAGAGCCATTGTAAGAAGAACCGTCGATGGGATTCCAGGACATGTTTGTCTTGAGTTTAAGTGTTTGCTCATGGATCTGTGA

Protein Analysis

358

Amino Acids

41.19

Weight (kDa)

4.72

Isoelectric Point (pI)

40.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
protein_MS5 PF04776 233 - 349 6.8e-35 Protein MS5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1041
Acc16I TGCGCA 1 cut(s) 26
AccB7I CCANNNNNTGG 2 cut(s) 110, 215
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 20, 66, 863
AclWI GGATC 3 cut(s) 121, 200, 512
AcsI RAATTY 1 cut(s) 282
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 5 cut(s) 198, 344, 416, 637, 888
AfiI CCNNNNNNNGG 4 cut(s) 110, 215, 259, 1023
AflIII ACRYGT 3 cut(s) 551, 569, 1036
AgsI TTSAA 4 cut(s) 32, 425, 632, 797
AhlI ACTAGT 1 cut(s) 326
AjiI CACGTC 1 cut(s) 454
AjnI CCWGG 1 cut(s) 1030
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 566, 671, 922
AluI AGCT 3 cut(s) 566, 671, 922
Alw26I GTCTC 2 cut(s) 636, 831
AlwI GGATC 3 cut(s) 121, 200, 512
ApeKI GCWGC 2 cut(s) 22, 865
ApoI RAATTY 1 cut(s) 282
Asp700I GAANNNNTTC 1 cut(s) 269
AspLEI GCGC 2 cut(s) 27, 484
AspS9I GGNCC 1 cut(s) 980
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 590
BaeI ACNNNNGTAYC 2 cut(s) 27, 60
BanII GRGCYC 1 cut(s) 434
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 1 cut(s) 591
BbvCI CCTCAGC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 9, 852
BccI CCATC 7 cut(s) 114, 115, 213, 220, 651, 947, 1016
BciT130I CCWGG 1 cut(s) 1032
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 636, 831
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 4 cut(s) 60, 327, 396, 471
BfmI CTRYAG 2 cut(s) 610, 866
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 3 cut(s) 23, 863, 866
BlsI GCNGC 3 cut(s) 24, 864, 867
Bme1390I CCNGG 2 cut(s) 254, 1032
Bme18I GGWCC 1 cut(s) 980
BmgBI CACGTC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 980
BmrFI CCNGG 2 cut(s) 254, 1032
BmsI GCATC 1 cut(s) 438
BoxI GACNNNNGTC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 591
BplI GAGNNNNNCTC 2 cut(s) 390, 422
BpmI CTGGAG 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 507
BpuEI CTTGAG 5 cut(s) 461, 833, 908, 972, 1067
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 240
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 215, 259, 1023
Bse1I ACTGG 2 cut(s) 643, 794
Bse21I CCTNAGG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 1032
BseGI GGATG 5 cut(s) 100, 125, 224, 721, 774
BseJI GATNNNNATC 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 110, 215, 259, 1023
BseMII CTCAG 4 cut(s) 498, 581, 693, 798
BseNI ACTGG 2 cut(s) 643, 794
BseRI GAGGAG 1 cut(s) 963
BseXI GCAGC 2 cut(s) 9, 852
BseYI CCCAGC 1 cut(s) 929
Bsh1236I CGCG 1 cut(s) 288
Bsh1285I CGRYCG 2 cut(s) 16, 20
BsiEI CGRYCG 2 cut(s) 16, 20
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 4 cut(s) 110, 215, 259, 1023
BsmAI GTCTC 2 cut(s) 636, 831
BsmBI CGTCTC 1 cut(s) 636
BsmFI GGGAC 1 cut(s) 417
BsmI GAATGC 1 cut(s) 940
Bsp1286I GDGCHC 1 cut(s) 434
Bsp1407I TGTACA 2 cut(s) 196, 342
Bsp143I GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
Bsp68I TCGCGA 1 cut(s) 288
BspACI CCGC 3 cut(s) 20, 66, 863
BspCNI CTCAG 4 cut(s) 499, 582, 694, 799
BspFNI CGCG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 870
BspPI GGATC 3 cut(s) 121, 200, 512
BsrGI TGTACA 2 cut(s) 196, 342
BsrI ACTGG 2 cut(s) 643, 794
BssMI GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
BssSI CACGAG 1 cut(s) 894
Bst2BI CACGAG 1 cut(s) 894
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 2 cut(s) 43, 1018
BstAUI TGTACA 2 cut(s) 196, 342
BstBAI YACGTR 1 cut(s) 317
BstDEI CTNAG 4 cut(s) 507, 590, 702, 807
BstF5I GGATG 5 cut(s) 100, 125, 224, 721, 774
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 27, 484
BstKTI GATC 8 cut(s) 16, 116, 208, 244, 520, 748, 994, 1072
BstMAI GTCTC 2 cut(s) 636, 831
BstMBI GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
BstMCI CGRYCG 2 cut(s) 16, 20
BstMWI GCNNNNNNNGC 2 cut(s) 285, 935
BstNI CCWGG 1 cut(s) 1032
BstNSI RCATGY 3 cut(s) 555, 573, 1040
BstPAI GACNNNNGTC 1 cut(s) 605
BstSCI CCNGG 2 cut(s) 252, 1030
BstSFI CTRYAG 2 cut(s) 610, 866
BstSNI TACGTA 1 cut(s) 317
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 2 cut(s) 9, 852
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 113, 1069
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 2 cut(s) 113, 1069
Bsu36I CCTNAGG 1 cut(s) 590
BsuI GTATCC 1 cut(s) 588
BtgZI GCGATG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 454
BtsCI GGATG 5 cut(s) 100, 125, 224, 721, 774
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 742, 804
BtuMI TCGCGA 1 cut(s) 288
CciI TCATGA 1 cut(s) 49
CfoI GCGC 2 cut(s) 27, 484
Cfr13I GGNCC 1 cut(s) 980
CseI GACGC 2 cut(s) 200, 804
Csp6I GTAC 5 cut(s) 197, 343, 415, 636, 887
CviAII CATG 8 cut(s) 50, 552, 570, 732, 841, 977, 1037, 1066
CviQI GTAC 5 cut(s) 197, 343, 415, 636, 887
DdeI CTNAG 4 cut(s) 507, 590, 702, 807
DpnI GATC 8 cut(s) 15, 115, 207, 243, 519, 747, 993, 1071
DpnII GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
DraI TTTAAA 1 cut(s) 907
DrdI GACNNNNNNGTC 1 cut(s) 1041
DseDI GACNNNNNNGTC 1 cut(s) 1041
Eco105I TACGTA 1 cut(s) 317
Eco24I GRGCYC 1 cut(s) 434
Eco32I GATATC 1 cut(s) 682
Eco47I GGWCC 1 cut(s) 980
Eco57I CTGAAG 1 cut(s) 624
Eco81I CCTNAGG 1 cut(s) 590
EcoRII CCWGG 1 cut(s) 1030
EcoRV GATATC 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 434
Esp3I CGTCTC 1 cut(s) 636
FaeI CATG 8 cut(s) 53, 555, 573, 735, 844, 980, 1040, 1069
FaqI GGGAC 1 cut(s) 417
FatI CATG 8 cut(s) 49, 551, 569, 731, 840, 976, 1036, 1065
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 3 cut(s) 23, 863, 866
FokI GGATG 5 cut(s) 87, 132, 231, 728, 761
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 23, 863, 866
FspBI CTAG 4 cut(s) 60, 327, 396, 471
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 2 cut(s) 26, 483
GluI GCNGC 3 cut(s) 23, 863, 866
GsaI CCCAGC 1 cut(s) 933
GsuI CTGGAG 1 cut(s) 660
HapII CCGG 1 cut(s) 254
HgaI GACGC 2 cut(s) 200, 804
HhaI GCGC 2 cut(s) 27, 484
Hin1II CATG 8 cut(s) 53, 555, 573, 735, 844, 980, 1040, 1069
Hin6I GCGC 2 cut(s) 25, 482
HinP1I GCGC 2 cut(s) 25, 482
HincII GTYRAC 2 cut(s) 250, 310
HindII GTYRAC 2 cut(s) 250, 310
HinfI GANTC 7 cut(s) 290, 405, 474, 530, 628, 767, 1027
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 5 cut(s) 250, 310, 332, 343, 983
Hpy188I TCNGA 6 cut(s) 190, 295, 324, 715, 772, 779
Hpy8I GTNNAC 5 cut(s) 250, 310, 332, 343, 983
Hpy99I CGWCG 3 cut(s) 299, 458, 1022
HpyAV CCTTC 2 cut(s) 377, 827
HpyCH4III ACNGT 2 cut(s) 43, 1018
HpyCH4IV ACGT 3 cut(s) 316, 453, 535
HpyCH4V TGCA 4 cut(s) 451, 735, 763, 868
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 935
HpyF3I CTNAG 4 cut(s) 507, 590, 702, 807
HpySE526I ACGT 3 cut(s) 316, 453, 535
Hsp92II CATG 8 cut(s) 53, 555, 573, 735, 844, 980, 1040, 1069
HspAI GCGC 2 cut(s) 25, 482
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
Lsp1109I GCAGC 2 cut(s) 9, 852
LweI GCATC 1 cut(s) 438
MaeI CTAG 4 cut(s) 60, 327, 396, 471
MaeII ACGT 3 cut(s) 316, 453, 535
MaeIII GTNAC 2 cut(s) 374, 556
MalI GATC 8 cut(s) 15, 115, 207, 243, 519, 747, 993, 1071
MboI GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
MboII GAAGA 9 cut(s) 44, 95, 143, 191, 242, 596, 911, 934, 1023
MflI RGATCY 2 cut(s) 113, 1069
MhlI GDGCHC 1 cut(s) 434
MluCI AATT 4 cut(s) 182, 282, 466, 615
MlyI GAGTC 2 cut(s) 399, 776
MmeI TCCRAC 2 cut(s) 318, 347
MnlI CCTC 5 cut(s) 502, 585, 837, 984, 996
MroXI GAANNNNTTC 1 cut(s) 269
MseI TTAA 5 cut(s) 92, 618, 873, 906, 1053
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 2 cut(s) 22, 865
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 254, 1032
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 1032
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 285, 935
NciI CCSGG 1 cut(s) 254
NdeII GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
NlaIII CATG 8 cut(s) 53, 555, 573, 735, 844, 980, 1040, 1069
NmuCI GTSAC 1 cut(s) 374
NruI TCGCGA 1 cut(s) 288
NsbI TGCGCA 1 cut(s) 26
NspI RCATGY 3 cut(s) 555, 573, 1040
PagI TCATGA 1 cut(s) 49
PciI ACATGT 3 cut(s) 551, 569, 1036
PctI GAATGC 1 cut(s) 940
PdmI GAANNNNTTC 1 cut(s) 269
PfeI GAWTC 5 cut(s) 290, 474, 530, 628, 1027
PflMI CCANNNNNTGG 2 cut(s) 110, 215
PfoI TCCNGGA 1 cut(s) 1030
PkrI GCNGC 3 cut(s) 24, 864, 867
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 2 cut(s) 399, 775
PpsI GAGTC 2 cut(s) 399, 775
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 3 cut(s) 551, 569, 1036
PshAI GACNNNNGTC 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 1030
PspFI CCCAGC 1 cut(s) 929
PspGI CCWGG 1 cut(s) 1030
PspPI GGNCC 1 cut(s) 980
PstI CTGCAG 1 cut(s) 870
PsuI RGATCY 2 cut(s) 113, 1069
PvuI CGATCG 1 cut(s) 16
RruI TCGCGA 1 cut(s) 288
RsaI GTAC 5 cut(s) 198, 344, 416, 637, 888
RsaNI GTAC 5 cut(s) 197, 343, 415, 636, 887
RseI CAYNNNNRTG 1 cut(s) 217
SaqAI TTAA 5 cut(s) 92, 618, 873, 906, 1053
SatI GCNGC 3 cut(s) 23, 863, 866
Sau3AI GATC 8 cut(s) 13, 113, 205, 241, 517, 745, 991, 1069
Sau96I GGNCC 1 cut(s) 980
SchI GAGTC 2 cut(s) 399, 776
ScrFI CCNGG 2 cut(s) 254, 1032
SduI GDGCHC 1 cut(s) 434
SfaNI GCATC 1 cut(s) 438
SfcI CTRYAG 2 cut(s) 610, 866
SinI GGWCC 1 cut(s) 980
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 5 cut(s) 440, 848, 923, 987, 1046
SmoI CTYRAG 5 cut(s) 440, 848, 923, 987, 1046
SnaBI TACGTA 1 cut(s) 317
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 4 cut(s) 182, 282, 466, 615
SsiI CCGC 3 cut(s) 20, 66, 863
SspMI CTAG 4 cut(s) 60, 327, 396, 471
StyD4I CCNGG 2 cut(s) 252, 1030
TaaI ACNGT 2 cut(s) 43, 1018
TaiI ACGT 3 cut(s) 319, 456, 538
TaqI TCGA 6 cut(s) 12, 16, 77, 173, 456, 1020
TasI AATT 4 cut(s) 182, 282, 466, 615
TatI WGTACW 2 cut(s) 196, 342
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 5 cut(s) 290, 474, 530, 628, 1027
Tru1I TTAA 5 cut(s) 92, 618, 873, 906, 1053
Tru9I TTAA 5 cut(s) 92, 618, 873, 906, 1053
TscAI CASTG 2 cut(s) 742, 811
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 22, 865
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 597
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 742, 811
Van91I CCANNNNNTGG 2 cut(s) 110, 215
VpaK11BI GGWCC 1 cut(s) 980
XapI RAATTY 1 cut(s) 282
XbaI TCTAGA 1 cut(s) 470
XceI RCATGY 3 cut(s) 555, 573, 1040
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 269
XspI CTAG 4 cut(s) 60, 327, 396, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.