Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

16653337 .. 16654635

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAGCCGCTTGGTTCAGACGATGTTGTTATGGCTCAAAAGCGAAAAGGGGTTCGATACTACAGAAGCGAGTGATGGTCCTGAACTTCAAAAATCCATCTGTGATAAAAGGTGGTCACCTTGTTGTACCTTAGTCCGCCTTTATGCTAGGATGGGTCTTCATCGTTACAATTTGTTGAAGCTTAGTCGTGTAAAGAAATACAATATGAGTACGCATTATGCTGCTTTTGCCACAACTCATAGGAGCAATGGTAAATATCATGATCTCTCCGACTTGAAAATTTTTGAAAGTAGTGAAGATGTGGAGCCACCTAATGAGGTATCACTCAATGTCATTAATGTGATTGTCTACATAGTGTACAAGGACTTTTATGAGTCTCGGTTGGTAAGGATGTTGATCGCAAAGCTATTGTTAAACGAAGCTTCAATGAGCATAATGGACGCTTCATTGTCGAGGGTCGAAATAAGGTTATCAAATCCGATTTGGGTCTGGTCCGACATTTACGAGTGTCCTACGCAAAAACTTAATGACATGTCCTTTTCATATATTCCAGAAACATACTTAGTAATAAAAATAAAATCTACTAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

22.99

Weight (kDa)

8.78

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	2 cut(s)	7, 136
AcsI	RAATTY	1 cut(s)	279
AfaI	GTAC	4 cut(s)	127, 211, 359, 590
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	5 cut(s)	89, 178, 277, 287, 426
AluBI	AGCT	3 cut(s)	181, 406, 422
AluI	AGCT	3 cut(s)	181, 406, 422
Alw26I	GTCTC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	221
ApoI	RAATTY	1 cut(s)	279
AseI	ATTAAT	1 cut(s)	336
AspS9I	GGNCC	2 cut(s)	77, 492
AsuHPI	GGTGA	1 cut(s)	108
AvaII	GGWCC	2 cut(s)	77, 492
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	208
BccI	CCATC	3 cut(s)	68, 104, 145
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	7, 222
BlsI	GCNGC	2 cut(s)	8, 223
BmcAI	AGTACT	1 cut(s)	590
Bme18I	GGWCC	2 cut(s)	77, 492
BmgT120I	GGNCC	2 cut(s)	77, 492
BmiI	GGNNCC	1 cut(s)	306
BpiI	GAAGAC	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	395
BsaXI	ACNNNNNCTCC	2 cut(s)	235, 265
Bse3DI	GCAATG	1 cut(s)	253
Bse8I	GATNNNNATC	1 cut(s)	395
BseGI	GGATG	2 cut(s)	156, 396
BseJI	GATNNNNATC	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	262, 396
BspACI	CCGC	2 cut(s)	7, 136
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	357
BssMI	GATC	2 cut(s)	262, 396
BstAUI	TGTACA	1 cut(s)	357
BstDEI	CTNAG	4 cut(s)	130, 182, 562, 585
BstEII	GGTNACC	1 cut(s)	114
BstF5I	GGATG	2 cut(s)	156, 396
BstKTI	GATC	2 cut(s)	265, 399
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	2 cut(s)	262, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	535
BstPI	GGTNACC	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	208
BstV2I	GAAGAC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	156, 396
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	2 cut(s)	77, 492
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	4 cut(s)	126, 210, 358, 589
CviAII	CATG	2 cut(s)	260, 532
CviJI	RGCY	6 cut(s)	6, 34, 181, 307, 406, 422
CviKI_1	RGCY	6 cut(s)	6, 34, 181, 307, 406, 422
CviQI	GTAC	4 cut(s)	126, 210, 358, 589
DdeI	CTNAG	4 cut(s)	130, 182, 562, 585
DpnI	GATC	2 cut(s)	264, 398
DpnII	GATC	2 cut(s)	262, 396
EciI	GGCGGA	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	77, 492
Eco91I	GGTNACC	1 cut(s)	114
EcoO65I	GGTNACC	1 cut(s)	114
FaeI	CATG	2 cut(s)	263, 535
FatI	CATG	2 cut(s)	259, 531
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	7, 222
FokI	GGATG	2 cut(s)	163, 403
Fsp4HI	GCNGC	2 cut(s)	7, 222
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	7, 222
HgaI	GACGC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	263, 535
HindIII	AAGCTT	2 cut(s)	179, 420
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	108
Hpy166II	GTNNAC	2 cut(s)	349, 358
Hpy188I	TCNGA	4 cut(s)	18, 271, 480, 496
Hpy188III	TCNNGA	3 cut(s)	80, 260, 551
Hpy8I	GTNNAC	2 cut(s)	349, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	4 cut(s)	130, 182, 562, 585
Hsp92II	CATG	2 cut(s)	263, 535
Kzo9I	GATC	2 cut(s)	262, 396
LmnI	GCTCC	2 cut(s)	243, 304
LpnPI	CCDG	3 cut(s)	93, 475, 564
Lsp1109I	GCAGC	1 cut(s)	208
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	114, 164
MalI	GATC	2 cut(s)	264, 398
MboI	GATC	2 cut(s)	262, 396
MboII	GAAGA	2 cut(s)	149, 308
MluCI	AATT	2 cut(s)	169, 279
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	2 cut(s)	294, 519
MnlI	CCTC	2 cut(s)	310, 447
MseI	TTAA	3 cut(s)	336, 413, 525
MslI	CAYNNNNRTG	1 cut(s)	338
MwoI	GCNNNNNNNGC	1 cut(s)	227
NdeII	GATC	2 cut(s)	262, 396
NlaIII	CATG	2 cut(s)	263, 535
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	114
NspI	RCATGY	1 cut(s)	535
PagI	TCATGA	1 cut(s)	259
PciI	ACATGT	1 cut(s)	531
PkrI	GCNGC	2 cut(s)	8, 223
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
PscI	ACATGT	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	77, 492
RsaI	GTAC	4 cut(s)	127, 211, 359, 590
RsaNI	GTAC	4 cut(s)	126, 210, 358, 589
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	336, 413, 525
SatI	GCNGC	2 cut(s)	7, 222
Sau3AI	GATC	2 cut(s)	262, 396
Sau96I	GGNCC	2 cut(s)	77, 492
ScaI	AGTACT	1 cut(s)	590
SchI	GAGTC	1 cut(s)	383
SetI	ASST	9 cut(s)	113, 121, 131, 183, 313, 321, 408, 424, 470
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	2 cut(s)	77, 492
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	169, 279
SsiI	CCGC	2 cut(s)	7, 136
SspMI	CTAG	1 cut(s)	147
TaqI	TCGA	3 cut(s)	54, 452, 459
TasI	AATT	2 cut(s)	169, 279
TatI	WGTACW	2 cut(s)	357, 588
TauI	GCSGC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	336, 413, 525
Tru9I	TTAA	3 cut(s)	336, 413, 525
TseFI	GTSAC	1 cut(s)	114
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	114
TspDTI	ATGAA	3 cut(s)	149, 435, 531
VpaK11BI	GGWCC	2 cut(s)	77, 492
VspI	ATTAAT	1 cut(s)	336
XapI	RAATTY	1 cut(s)	279
XceI	RCATGY	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	147
ZrmI	AGTACT	1 cut(s)	590

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.