Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001976

Physical Location & Seq

Genomic Coordinates Reverse (-)

10871643 .. 10873615

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G20095.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGGTAACGGAATGTGGAAGCAAGAAGCCAGAGACTTGGTCGAGGAACCATCGCAGAGTAATGAGAAGCTGGAAGATCAGAGACCACAAGAATCTTCATCCTCCATCCCACGACATGTTTGGGCTAATCGGAGAGAAGAAAAGTTTGATTATAACAAATACTACATTAAACAAAGGGCTGACATTGCAAAATATGGAGGACCTCATCCAAATATAATCCTCTTCGGTAGAGTTGGACTTCATTGCTACAATCTGCAAAATGGCACAAACTTACAATTTCTGACTGTACACAATTTTGACTCATGGATAACCTCGATTCTTTCTCATTTCATAAGTTTGGAGGCAATGGATCCAGTAGACAATTCGATCTGTGAGTTCGAAACGCACGTTAGGTATGCCGTTGAGAATAAACACTGCTTGAGCACAATTACAACGGGAGGCAGAATAAAGCCCAAAATTCCAGAGGAGGAAGACACATATTTTGGATGGAACAAAGATCTCGTGGATGATTTCTTCAAAGGTGGTATGCCCGAGTGGATGCCGGAAGATGCACTAACGGGAAGGGACAAGCTGCAATACTATGAGGTGAGATTTTTCATGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004831 GO:0004832 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006438 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_1b

Protein Analysis

201

Amino Acids

23.55

Weight (kDa)

5.39

Isoelectric Point (pI)

52.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G02770 AT1G19060 AT1G19565 AT1G22090 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23950 AT1G23960 AT1G23960 AT1G23970 AT1G23970 AT1G24388 AT1G27860 AT1G28500 AT1G80625 AT2G20620 AT2G20625 AT2G20625 AT3G19520 AT3G19520 AT3G19520 AT3G19520 AT3G19790 AT3G19790 AT3G20555 AT3G25080 AT3G44760 AT3G44770 AT3G44770 AT3G57210 AT4G11700 AT4G17700 AT4G17990 AT4G17990 AT4G20095 AT4G20095 AT4G20095 AT4G28920 AT4G29550 AT4G29550 AT4G29550 AT5G41640 AT5G63820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	153
AccI	GTMKAC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	344, 357
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	1 cut(s)	288
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	517
AluBI	AGCT	2 cut(s)	70, 571
AluI	AGCT	2 cut(s)	70, 571
Alw21I	GWGCWC	1 cut(s)	425
Alw26I	GTCTC	2 cut(s)	27, 76
AlwI	GGATC	2 cut(s)	344, 357
Ama87I	CYCGRG	1 cut(s)	530
ApeKI	GCWGC	1 cut(s)	571
ApoI	RAATTY	1 cut(s)	456
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	598
AsuII	TTCGAA	1 cut(s)	378
AvaI	CYCGRG	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	500
BbsI	GAAGAC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	558
BccI	CCATC	3 cut(s)	58, 113, 480
BceAI	ACGGC	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	27, 76
BglII	AGATCT	1 cut(s)	496
BisI	GCNGC	1 cut(s)	572
BlsI	GCNGC	1 cut(s)	573
Bme18I	GGWCC	1 cut(s)	200
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	2 cut(s)	48, 351
BmsI	GCATC	2 cut(s)	528, 538
BpiI	GAAGAC	1 cut(s)	477
Bpu14I	TTCGAA	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	439
BsaI	GGTCTC	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	353
Bse3DI	GCAATG	3 cut(s)	183, 241, 351
BseGI	GGATG	6 cut(s)	98, 105, 205, 491, 511, 543
BseMI	GCAATG	3 cut(s)	183, 241, 351
BseNI	ACTGG	1 cut(s)	353
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	425
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	578
BsmAI	GTCTC	2 cut(s)	27, 76
BsmFI	GGGAC	1 cut(s)	578
Bso31I	GGTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	530
Bsp119I	TTCGAA	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	425
Bsp1407I	TGTACA	1 cut(s)	286
Bsp143I	GATC	4 cut(s)	76, 349, 366, 496
BspLI	GGNNCC	2 cut(s)	48, 351
BspPI	GGATC	2 cut(s)	344, 357
BspT104I	TTCGAA	1 cut(s)	378
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	3 cut(s)	183, 241, 351
BsrGI	TGTACA	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	353
BssMI	GATC	4 cut(s)	76, 349, 366, 496
BssSI	CACGAG	1 cut(s)	500
Bst2BI	CACGAG	1 cut(s)	500
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	286
BstBI	TTCGAA	1 cut(s)	378
BstF5I	GGATG	6 cut(s)	98, 105, 205, 491, 511, 543
BstKTI	GATC	4 cut(s)	79, 352, 369, 499
BstMAI	GTCTC	2 cut(s)	27, 76
BstMBI	GATC	4 cut(s)	76, 349, 366, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	558
BstV2I	GAAGAC	1 cut(s)	477
BstX2I	RGATCY	2 cut(s)	349, 496
BstXI	CCANNNNNNTGG	1 cut(s)	37
BstYI	RGATCY	2 cut(s)	349, 496
BtgZI	GCGATG	1 cut(s)	36
BtsCI	GGATG	6 cut(s)	98, 105, 205, 491, 511, 543
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	3 cut(s)	116, 303, 598
CviJI	RGCY	6 cut(s)	29, 70, 125, 179, 451, 571
CviKI_1	RGCY	6 cut(s)	29, 70, 125, 179, 451, 571
CviQI	GTAC	1 cut(s)	287
DpnI	GATC	4 cut(s)	78, 351, 368, 498
DpnII	GATC	4 cut(s)	76, 349, 366, 496
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	530
EcoO109I	RGGNCCY	1 cut(s)	200
FaeI	CATG	3 cut(s)	119, 306, 601
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	115, 302, 597
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	1 cut(s)	572
FokI	GGATG	6 cut(s)	85, 92, 192, 498, 518, 550
Fsp4HI	GCNGC	1 cut(s)	572
GluI	GCNGC	1 cut(s)	572
HapII	CCGG	1 cut(s)	542
Hin1II	CATG	3 cut(s)	119, 306, 601
HinfI	GANTC	3 cut(s)	92, 299, 316
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	2 cut(s)	289, 358
Hpy188I	TCNGA	3 cut(s)	81, 132, 282
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	2 cut(s)	289, 358
HpyAV	CCTTC	1 cut(s)	555
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	4 cut(s)	188, 256, 551, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	119, 306, 601
Kzo9I	GATC	4 cut(s)	76, 349, 366, 496
LpnPI	CCDG	5 cut(s)	43, 56, 366, 474, 555
Lsp1109I	GCAGC	1 cut(s)	558
LweI	GCATC	2 cut(s)	528, 538
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	78, 351, 368, 498
MboI	GATC	4 cut(s)	76, 349, 366, 496
MboII	GAAGA	7 cut(s)	86, 87, 149, 214, 482, 505, 557
MflI	RGATCY	2 cut(s)	349, 496
MhlI	GDGCHC	1 cut(s)	425
MluCI	AATT	5 cut(s)	275, 292, 361, 426, 456
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	214
MseI	TTAA	2 cut(s)	168, 604
MspI	CCGG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	4 cut(s)	76, 349, 366, 496
NlaIII	CATG	3 cut(s)	119, 306, 601
NlaIV	GGNNCC	2 cut(s)	48, 351
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	378
PciI	ACATGT	1 cut(s)	115
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	92, 316
PflFI	GACNNNGTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	573
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	200
PscI	ACATGT	1 cut(s)	115
PsiI	TTATAA	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	48, 351
PspPI	GGNCC	1 cut(s)	200
PspPPI	RGGWCCY	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	349, 496
PsyI	GACNNNGTC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	168, 604
SatI	GCNGC	1 cut(s)	572
Sau3AI	GATC	4 cut(s)	76, 349, 366, 496
Sau96I	GGNCC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	293
SduI	GDGCHC	1 cut(s)	425
SetI	ASST	8 cut(s)	72, 205, 314, 390, 395, 523, 573, 588
SfaNI	GCATC	2 cut(s)	528, 538
SfuI	TTCGAA	1 cut(s)	378
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
Sse9I	AATT	5 cut(s)	275, 292, 361, 426, 456
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	4 cut(s)	42, 314, 365, 378
TasI	AATT	5 cut(s)	275, 292, 361, 426, 456
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	92, 316
Tru1I	TTAA	2 cut(s)	168, 604
Tru9I	TTAA	2 cut(s)	168, 604
TscAI	CASTG	1 cut(s)	419
TseI	GCWGC	1 cut(s)	571
TspDTI	ATGAA	4 cut(s)	87, 230, 319, 586
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	419
Tth111I	GACNNNGTC	1 cut(s)	38
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.