AT1G04140

Transducin family protein WD-40 repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001434
Physical Location & Seq
Reverse (-)
1075543 .. 1080630
5088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G04140.1

Sequence Viewer

Length: 2373 bp
ATGACGGAATCTATCTGGTTAAACGATCAATCTTCTCCTCGGTCGATGATACCTTCAGCAAAACCAGTGGCTAATGTCCATCGCCAGAGGTGTAGGAGTGTCTTCAAGTTACTAGTCCAGAGGGAAATTTCACCAAACACAAAGTTTGTTCCAAGAAAACGGTGGGGTGAAAGCCGATGTGATGCTGATTCGTCGTGTGGAACCACTAGCGAACCAGTGAGAGAGCAGGGACTTAATCTTATTTCTTGGGTTGAGGCAGAGTCATTGCAGCATTTATCTGCTAAATACTGTCCTCTTGTACCTCCTCCAAGGTCAACGATTGCAGCAGCTTTTAGTTCAGATGGAAGAACTCTTGCTTCTACACATGGTGACCACACTGTAAAAATTATTGATTGTGAGACAGGAAAATGCTTAAAAATATTGACTGGCCATCGAAGGACACCCTGGGTGGTCAGATTTCACCCGCGCCACTCAGAAATAGTTGCTAGTGGAAGTTTAGATCATGAGGTGCGCTTATGGAATGCAAAAACTGGGGAGTGTATCAGAACTCATGATTTCTATCGACCTATTGCTTCCATTGCTTTCCACGCTGGAGGTGAATTACTTGCTGTTGCATCTGGTCATAAGTTGCACATATGGCATTATAATAAGGGAGGGGATGACTCGGCACCAGCAATTGTGTTGAAGACAAGGCGGTCCCTGAGAGCTGTACACTTTCATCCACATGGGGTTCCTCTTCTCTTGACTGCTGAGGTGACTGACATTGATTCATCAGATTCCGCAATGACAAGATCAACATCTCCAGGTTATTTGCGATATCCGCCCCCTGCTATTTTCTTCACCAACACACAAAGTGGCAGTCGTACCAGTTTGGCAGCCGAACTGCCACTTGTGCCATTACCGTATTTGCTCTTGCCTTCATATTCTGCGGATGATCCAAGAATACTATATTCTAGTGGTACTACTGGTCCAAGGAATGCACAAACAAGGTTTCAGAGTAATCAAAGTTCTGTAGAACATGGCAGCAGAACAATTTCGCCTTCTCCTCTTCCCATGGCTACGTCTGCTGATCTTTCTGGTTCCTATCATGTCCCAGACAACTCTGCTAGTAATACATTTGCTACCCAAGCAGGAGCTAGAAATTCTACTACTGCAGTTGATGCCATGGATGTAGATGAAGCTCAACCTGTTGGAAGAAATAGAGTTCCCAGTCAAGTTTCAAGTCAACCAGATTTACTGGAGTTTGGACAACTTCAGCAGTTATTTCACTTTAGAGACAGAGGTTCCTGGGAGCTACCTTTTCTACAAGGGTGGTTGATGGCTCAAAGCCAAGCTGGTGCTAATTCAGTGGCTCTTCCTACTGGTAGTAGTGGTCACGTCAACTCAACTCCTTATATGGGTTCTTCTTCAGCATCTCATTCATCCACAGCCAGTCTAGAGGCTGGAGTAGCGTCATTAGAAATTCCTGGTGGTGTTAACTTATATGGGGTTTCTGCAAGAGGTGACTCCCGGGACCGAATTCTACAGTCCCGCTTCGCAGGATCTGGTTTAGCAGAAGGTCGTTCCTCTCGTAACACTCAACATGAAGGAGCTGATGCTCAACCTGTGGTAAACAGAATCCCTTCTGAACTGGCTAGTTCAATTGCTGCTGCAGAGTTGCCTTGTACTGTCAAACTGAGAGTGTGGTCACATGACATCAAAGACCCATGTTCAATACTGAAGTCTGACAAATGTCGATTAACAATACATCATGCTGTTCTTTGCAGTGAGATGGGAGCCCATTTTTCTCCATGTGGGAGATATTTAGCAGCCTGTGTTGCATGCGTTATTCCTCATGCTGAGACAGATCCAAGTTTGCAGACACTGGTCCAACAAGACTCAGGGCTTGCAACTTCCCCTACTCGACATCCTGTCACAGCACATCAAGTCATGTATGAACTTCGTGTGTATTCTCTGGAAAAAGAATCATTTGGTTCGGTACTTGTGTCCCGGGCAATTAGGGCTGCACATTGCTTAACCTCTATCCAGTTCTCACCAACCTCCGAGCACATTCTGCTTGCATATGGTCGTCGTCATGGTTCTCTTTTGAAGAGCATTGTGAGTGATGGAGAAACAACATCACATTTTTTCACAGTTTTGGAGATTTACAGAGTTTCAGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGGAGGGAAAACTAAGGATCTTCCGGTACAACACAGCTGCTGCGTCCAATCTCACTGCACCAAATAGCTCTCCCGATGAGAACTTGGCCGAGGTGCAGACCTATGCGTTAGAATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

790

Amino Acids

85.67

Weight (kDa)

7.42

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 106 - 243 7.3e-22 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 108 - 214 1e-13 WDR3 first beta-propeller domain
WDR55 PF24796 108 - 207 2.9e-07 WDR55
EIF3I PF24805 108 - 206 7e-09 EIF3I
Beta-prop_WDR3_2nd PF25172 109 - 209 2.2e-06 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 110 - 248 3.9e-22 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 110 - 212 2.9e-11 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 110 - 217 9.3e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 111 - 215 4e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR75_1st PF23869 111 - 193 2.8e-06 WD repeat-containing protein 75 first beta-propeller
WD40_Prp19 PF24814 113 - 244 1.1e-12 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 149 - 244 1.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 645
AasI GACNNNNNNGTC 1 cut(s) 694
AccB1I GGYRCC 1 cut(s) 667
AccII CGCG 1 cut(s) 466
AciI CCGC 6 cut(s) 464, 694, 780, 821, 929, 1531
AclWI GGATC 4 cut(s) 929, 1549, 1841, 2279
AcoI YGGCCR 2 cut(s) 427, 2340
AcsI RAATTY 4 cut(s) 126, 1141, 1461, 1518
AcuI CTGAAG 4 cut(s) 39, 1238, 1392, 1739
AdeI CACNNNGTG 2 cut(s) 368, 854
AfaI GTAC 8 cut(s) 300, 711, 865, 961, 1666, 1980, 2178, 2282
AfiI CCNNNNNNNGG 3 cut(s) 1397, 2228, 2234
AgsI TTSAA 6 cut(s) 106, 685, 1221, 1641, 1713, 2089
AhdI GACNNNNNGTC 1 cut(s) 1910
AhlI ACTAGT 1 cut(s) 112
AjiI CACGTC 1 cut(s) 1378
AjnI CCWGG 5 cut(s) 443, 802, 1286, 1465, 2227
Alw21I GWGCWC 1 cut(s) 2049
Alw26I GTCTC 3 cut(s) 392, 1269, 1835
AlwI GGATC 4 cut(s) 929, 1549, 1841, 2279
AlwNI CAGNNNCTG 3 cut(s) 1544, 1864, 2294
Ama87I CYCGRG 2 cut(s) 1509, 1989
AoxI GGCC 2 cut(s) 427, 2340
ApoI RAATTY 4 cut(s) 126, 1141, 1461, 1518
ArsI GACNNNNNNTTYG 2 cut(s) 844, 876
Asp700I GAANNNNTTC 2 cut(s) 1033, 1621
AspLEI GCGC 2 cut(s) 468, 513
AspS9I GGNCC 4 cut(s) 696, 968, 1513, 1867
AsuC2I CCSGG 4 cut(s) 1510, 1511, 1990, 1991
AvaI CYCGRG 2 cut(s) 1509, 1989
AvaII GGWCC 4 cut(s) 696, 968, 1513, 1867
BaeI ACNNNNGTAYC 2 cut(s) 1970, 2003
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 1780
BbsI GAAGAC 2 cut(s) 94, 692
Bbv12I GWGCWC 1 cut(s) 2049
BbvCI CCTCAGC 1 cut(s) 750
BccI CCATC 6 cut(s) 87, 335, 438, 1312, 1765, 2099
BciT130I CCWGG 5 cut(s) 445, 804, 1288, 1467, 2229
BcnI CCSGG 4 cut(s) 1510, 1511, 1990, 1991
BcoDI GTCTC 3 cut(s) 392, 1269, 1835
BcuI ACTAGT 1 cut(s) 112
BfaI CTAG 9 cut(s) 113, 207, 486, 954, 1107, 1137, 1436, 1635, 2371
BfmI CTRYAG 4 cut(s) 1011, 1152, 1523, 1650
BmcAI AGTACT 1 cut(s) 2178
Bme1390I CCNGG 9 cut(s) 445, 804, 1288, 1467, 1510, 1511, 1990, 1991, 2229
Bme18I GGWCC 4 cut(s) 696, 968, 1513, 1867
BmeRI GACNNNNNGTC 1 cut(s) 1910
BmeT110I CYCGRG 2 cut(s) 1509, 1989
BmgBI CACGTC 1 cut(s) 1378
BmgT120I GGNCC 4 cut(s) 696, 968, 1513, 1867
BmiI GGNNCC 8 cut(s) 202, 669, 698, 732, 1081, 1285, 1514, 1777
BmrFI CCNGG 9 cut(s) 445, 804, 1288, 1467, 1510, 1511, 1990, 1991, 2229
BmrI ACTGGG 2 cut(s) 540, 1203
BmsI GCATC 5 cut(s) 172, 623, 1150, 1421, 1585
BmuI ACTGGG 2 cut(s) 540, 1203
BoxI GACNNNNGTC 2 cut(s) 1731, 1865
BpiI GAAGAC 2 cut(s) 94, 692
BpmI CTGGAG 4 cut(s) 612, 786, 1259, 1464
Bpu10I CCTNAGC 1 cut(s) 750
BpuMI CCSGG 4 cut(s) 1510, 1511, 1990, 1991
BsaBI GATNNNNATC 2 cut(s) 558, 796
BsaWI WCCGGW 1 cut(s) 2277
BsaXI ACNNNNNCTCC 2 cut(s) 2226, 2256
Bsc4I CCNNNNNNNGG 3 cut(s) 1397, 2228, 2234
Bse3DI GCAATG 4 cut(s) 263, 576, 789, 2008
Bse8I GATNNNNATC 2 cut(s) 558, 796
BseBI CCWGG 5 cut(s) 445, 804, 1288, 1467, 2229
BseGI GGATG 8 cut(s) 664, 718, 937, 1174, 1421, 1906, 2200, 2218
BseJI GATNNNNATC 2 cut(s) 558, 796
BseLI CCNNNNNNNGG 3 cut(s) 1397, 2228, 2234
BseMI GCAATG 4 cut(s) 263, 576, 789, 2008
BseMII CTCAG 7 cut(s) 486, 692, 741, 1667, 1830, 1893, 2202
BseRI GAGGAG 3 cut(s) 27, 294, 1035
BsgI GTGCAG 3 cut(s) 1989, 2295, 2369
Bsh1236I CGCG 1 cut(s) 466
Bsh1285I CGRYCG 1 cut(s) 44
BshFI GGCC 2 cut(s) 429, 2342
BshNI GGYRCC 1 cut(s) 667
BsiEI CGRYCG 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 2049
BsiHKCI CYCGRG 2 cut(s) 1509, 1989
BsiSI CCGG 3 cut(s) 1510, 1990, 2278
BslFI GGGAC 6 cut(s) 243, 682, 1076, 1513, 1526, 1972
BslI CCNNNNNNNGG 3 cut(s) 1397, 2228, 2234
BsmAI GTCTC 3 cut(s) 392, 1269, 1835
BsmFI GGGAC 6 cut(s) 243, 682, 1076, 1513, 1526, 1972
BsmI GAATGC 3 cut(s) 526, 982, 2372
BsnI GGCC 2 cut(s) 429, 2342
BsoBI CYCGRG 2 cut(s) 1509, 1989
Bsp1286I GDGCHC 2 cut(s) 1780, 2049
Bsp1407I TGTACA 1 cut(s) 709
Bsp143I GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
Bsp19I CCATGG 2 cut(s) 1053, 1164
BspACI CCGC 6 cut(s) 464, 694, 780, 821, 929, 1531
BspANI GGCC 2 cut(s) 429, 2342
BspCNI CTCAG 7 cut(s) 485, 693, 742, 1668, 1831, 1892, 2201
BspFNI CGCG 1 cut(s) 466
BspHI TCATGA 2 cut(s) 502, 550
BspLI GGNNCC 8 cut(s) 202, 669, 698, 732, 1081, 1285, 1514, 1777
BspMAI CTGCAG 2 cut(s) 1156, 1654
BspPI GGATC 4 cut(s) 929, 1549, 1841, 2279
BspQI GCTCTTC 2 cut(s) 1359, 2084
BspT107I GGYRCC 1 cut(s) 667
BsrDI GCAATG 4 cut(s) 263, 576, 789, 2008
BsrGI TGTACA 1 cut(s) 709
BssMI GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
BssT1I CCWWGG 4 cut(s) 308, 971, 1053, 1164
Bst2UI CCWGG 5 cut(s) 445, 804, 1288, 1467, 2229
Bst4CI ACNGT 7 cut(s) 162, 290, 379, 903, 1527, 1669, 2134
Bst6I CTCTTC 4 cut(s) 741, 1053, 1359, 2084
BstAPI GCANNNNNTGC 2 cut(s) 1160, 2053
BstAUI TGTACA 1 cut(s) 709
BstC8I GCNNGC 4 cut(s) 1822, 1887, 2058, 2212
BstDEI CTNAG 8 cut(s) 472, 701, 750, 1676, 1839, 1879, 2188, 2267
BstDSI CCRYGG 2 cut(s) 1053, 1164
BstEII GGTNACC 1 cut(s) 368
BstENI CCTNNNNNAGG 1 cut(s) 2232
BstF5I GGATG 8 cut(s) 664, 718, 937, 1174, 1421, 1906, 2200, 2218
BstFNI CGCG 1 cut(s) 466
BstHHI GCGC 2 cut(s) 468, 513
BstKTI GATC 8 cut(s) 28, 502, 794, 937, 1072, 1544, 1849, 2274
BstMAI GTCTC 3 cut(s) 392, 1269, 1835
BstMBI GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
BstMCI CGRYCG 1 cut(s) 44
BstNI CCWGG 5 cut(s) 445, 804, 1288, 1467, 2229
BstNSI RCATGY 1 cut(s) 1824
BstPAI GACNNNNGTC 2 cut(s) 1731, 1865
BstPI GGTNACC 1 cut(s) 368
BstSCI CCNGG 9 cut(s) 443, 802, 1286, 1465, 1508, 1509, 1988, 1989, 2227
BstSFI CTRYAG 4 cut(s) 1011, 1152, 1523, 1650
BstUI CGCG 1 cut(s) 466
BstV2I GAAGAC 2 cut(s) 94, 692
BstX2I RGATCY 3 cut(s) 1541, 1846, 2271
BstYI RGATCY 3 cut(s) 1541, 1846, 2271
BsuRI GGCC 2 cut(s) 429, 2342
BtgI CCRYGG 2 cut(s) 1053, 1164
BtgZI GCGATG 1 cut(s) 65
BtrI CACGTC 1 cut(s) 1378
BtsCI GGATG 8 cut(s) 664, 718, 937, 1174, 1421, 1906, 2200, 2218
BtsI GCAGTG 2 cut(s) 1771, 2307
BtsIMutI CAGTG 7 cut(s) 72, 222, 375, 1353, 1771, 1862, 2307
Cac8I GCNNGC 4 cut(s) 1822, 1887, 2058, 2212
CaiI CAGNNNCTG 3 cut(s) 1544, 1864, 2294
CciI TCATGA 2 cut(s) 502, 550
CfoI GCGC 2 cut(s) 468, 513
Cfr13I GGNCC 4 cut(s) 696, 968, 1513, 1867
Cfr9I CCCGGG 2 cut(s) 1509, 1989
CseI GACGC 2 cut(s) 1440, 2286
Csp6I GTAC 8 cut(s) 299, 710, 864, 960, 1665, 1979, 2177, 2281
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviQI GTAC 8 cut(s) 299, 710, 864, 960, 1665, 1979, 2177, 2281
DdeI CTNAG 8 cut(s) 472, 701, 750, 1676, 1839, 1879, 2188, 2267
DpnI GATC 8 cut(s) 27, 501, 793, 936, 1071, 1543, 1848, 2273
DpnII GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
DraIII CACNNNGTG 2 cut(s) 368, 854
DrdI GACNNNNNNGTC 1 cut(s) 694
DriI GACNNNNNGTC 1 cut(s) 1910
DseDI GACNNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 2 cut(s) 427, 2340
Eam1104I CTCTTC 4 cut(s) 741, 1053, 1359, 2084
Eam1105I GACNNNNNGTC 1 cut(s) 1910
EarI CTCTTC 4 cut(s) 741, 1053, 1359, 2084
EciI GGCGGA 1 cut(s) 810
Eco130I CCWWGG 4 cut(s) 308, 971, 1053, 1164
Eco24I GRGCYC 1 cut(s) 1780
Eco32I GATATC 1 cut(s) 818
Eco47I GGWCC 4 cut(s) 696, 968, 1513, 1867
Eco57I CTGAAG 4 cut(s) 39, 1238, 1392, 1739
Eco88I CYCGRG 2 cut(s) 1509, 1989
Eco91I GGTNACC 1 cut(s) 368
EcoNI CCTNNNNNAGG 1 cut(s) 2232
EcoO65I GGTNACC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 1518
EcoRII CCWGG 5 cut(s) 443, 802, 1286, 1465, 2227
EcoRV GATATC 1 cut(s) 818
EcoT14I CCWWGG 4 cut(s) 308, 971, 1053, 1164
EcoT38I GRGCYC 1 cut(s) 1780
ErhI CCWWGG 4 cut(s) 308, 971, 1053, 1164
FaqI GGGAC 6 cut(s) 243, 682, 1076, 1513, 1526, 1972
FauI CCCGC 2 cut(s) 471, 1538
FauNDI CATATG 2 cut(s) 635, 2062
FokI GGATG 8 cut(s) 671, 705, 944, 1181, 1408, 1893, 2205, 2207
FriOI GRGCYC 1 cut(s) 1780
FspBI CTAG 9 cut(s) 113, 207, 486, 954, 1107, 1137, 1436, 1635, 2371
GlaI GCGC 2 cut(s) 467, 512
GsuI CTGGAG 4 cut(s) 612, 786, 1259, 1464
HaeIII GGCC 2 cut(s) 429, 2342
HapII CCGG 3 cut(s) 1510, 1990, 2278
HgaI GACGC 2 cut(s) 1440, 2286
HhaI GCGC 2 cut(s) 468, 513
Hin6I GCGC 2 cut(s) 466, 511
HinP1I GCGC 2 cut(s) 466, 511
HincII GTYRAC 4 cut(s) 315, 1226, 1381, 1477
HindII GTYRAC 4 cut(s) 315, 1226, 1381, 1477
HpaI GTTAAC 1 cut(s) 1477
HpaII CCGG 3 cut(s) 1510, 1990, 2278
Hpy166II GTNNAC 6 cut(s) 315, 712, 1226, 1381, 1477, 1612
Hpy188III TCNNGA 7 cut(s) 118, 503, 551, 742, 1436, 1955, 2327
Hpy8I GTNNAC 6 cut(s) 315, 712, 1226, 1381, 1477, 1612
Hpy99I CGWCG 2 cut(s) 196, 2073
HpyAV CCTTC 8 cut(s) 63, 429, 927, 1050, 1550, 1580, 1632, 2232
HpyCH4III ACNGT 7 cut(s) 162, 290, 379, 903, 1527, 1669, 2134
HpyCH4IV ACGT 2 cut(s) 1061, 1377
HpyF3I CTNAG 8 cut(s) 472, 701, 750, 1676, 1839, 1879, 2188, 2267
HpySE526I ACGT 2 cut(s) 1061, 1377
HspAI GCGC 2 cut(s) 466, 511
KspAI GTTAAC 1 cut(s) 1477
Kzo9I GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
LguI GCTCTTC 2 cut(s) 1359, 2084
LmnI GCTCC 4 cut(s) 1133, 1291, 1589, 1775
LweI GCATC 5 cut(s) 172, 623, 1150, 1421, 1585
MaeI CTAG 9 cut(s) 113, 207, 486, 954, 1107, 1137, 1436, 1635, 2371
MaeII ACGT 2 cut(s) 1061, 1377
MaeIII GTNAC 8 cut(s) 108, 368, 754, 1373, 1502, 1571, 1686, 1912
MalI GATC 8 cut(s) 27, 501, 793, 936, 1071, 1543, 1848, 2273
MboI GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
MfeI CAATTG 2 cut(s) 675, 1641
MflI RGATCY 3 cut(s) 1541, 1846, 2271
MhlI GDGCHC 2 cut(s) 1780, 2049
MlsI TGGCCA 1 cut(s) 429
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 4 cut(s) 269, 656, 1499, 1871
MmeI TCCRAC 2 cut(s) 1171, 1894
Mox20I TGGCCA 1 cut(s) 429
MroXI GAANNNNTTC 2 cut(s) 1033, 1621
MscI TGGCCA 1 cut(s) 429
MseI TTAA 7 cut(s) 20, 234, 413, 1476, 1739, 2015, 2202
MslI CAYNNNNRTG 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 2291
MspI CCGG 3 cut(s) 1510, 1990, 2278
MspR9I CCNGG 9 cut(s) 445, 804, 1288, 1467, 1510, 1511, 1990, 1991, 2229
MunI CAATTG 2 cut(s) 675, 1641
Mva1269I GAATGC 3 cut(s) 526, 982, 2372
MvaI CCWGG 5 cut(s) 445, 804, 1288, 1467, 2229
MvnI CGCG 1 cut(s) 466
NciI CCSGG 4 cut(s) 1510, 1511, 1990, 1991
NcoI CCATGG 2 cut(s) 1053, 1164
NdeI CATATG 2 cut(s) 635, 2062
NdeII GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
NlaIV GGNNCC 8 cut(s) 202, 669, 698, 732, 1081, 1285, 1514, 1777
NmeAIII GCCGAG 2 cut(s) 644, 2368
NmuCI GTSAC 6 cut(s) 368, 754, 1373, 1502, 1686, 1912
NspI RCATGY 1 cut(s) 1824
PaeI GCATGC 1 cut(s) 1824
PagI TCATGA 2 cut(s) 502, 550
PasI CCCWGGG 1 cut(s) 444
PciSI GCTCTTC 2 cut(s) 1359, 2084
PcsI WCGNNNNNNNCGW 1 cut(s) 1567
PctI GAATGC 3 cut(s) 526, 982, 2372
PdmI GAANNNNTTC 2 cut(s) 1033, 1621
PfeI GAWTC 6 cut(s) 8, 188, 767, 776, 1617, 1964
PleI GAGTC 4 cut(s) 268, 656, 1499, 1871
PpsI GAGTC 4 cut(s) 268, 656, 1499, 1871
PshAI GACNNNNGTC 2 cut(s) 1731, 1865
PsiI TTATAA 1 cut(s) 645
Psp6I CCWGG 5 cut(s) 443, 802, 1286, 1465, 2227
PspEI GGTNACC 1 cut(s) 368
PspGI CCWGG 5 cut(s) 443, 802, 1286, 1465, 2227
PspN4I GGNNCC 8 cut(s) 202, 669, 698, 732, 1081, 1285, 1514, 1777
PspPI GGNCC 4 cut(s) 696, 968, 1513, 1867
PsrI GAACNNNNNNTAC 2 cut(s) 991, 1023
PstI CTGCAG 2 cut(s) 1156, 1654
PstNI CAGNNNCTG 3 cut(s) 1544, 1864, 2294
PsuI RGATCY 3 cut(s) 1541, 1846, 2271
PvuII CAGCTG 1 cut(s) 2291
RsaI GTAC 8 cut(s) 300, 711, 865, 961, 1666, 1980, 2178, 2282
RsaNI GTAC 8 cut(s) 299, 710, 864, 960, 1665, 1979, 2177, 2281
RseI CAYNNNNRTG 1 cut(s) 723
SapI GCTCTTC 2 cut(s) 1359, 2084
SaqAI TTAA 7 cut(s) 20, 234, 413, 1476, 1739, 2015, 2202
Sau3AI GATC 8 cut(s) 25, 499, 791, 934, 1069, 1541, 1846, 2271
Sau96I GGNCC 4 cut(s) 696, 968, 1513, 1867
ScaI AGTACT 1 cut(s) 2178
SchI GAGTC 4 cut(s) 269, 656, 1499, 1871
ScrFI CCNGG 9 cut(s) 445, 804, 1288, 1467, 1510, 1511, 1990, 1991, 2229
SduI GDGCHC 2 cut(s) 1780, 2049
SfaNI GCATC 5 cut(s) 172, 623, 1150, 1421, 1585
SfcI CTRYAG 4 cut(s) 1011, 1152, 1523, 1650
SinI GGWCC 4 cut(s) 696, 968, 1513, 1867
SmaI CCCGGG 2 cut(s) 1511, 1991
SmiMI CAYNNNNRTG 1 cut(s) 723
SpeI ACTAGT 1 cut(s) 112
SphI GCATGC 1 cut(s) 1824
SsiI CCGC 6 cut(s) 464, 694, 780, 821, 929, 1531
SspI AATATT 1 cut(s) 420
SspMI CTAG 9 cut(s) 113, 207, 486, 954, 1107, 1137, 1436, 1635, 2371
StyD4I CCNGG 9 cut(s) 443, 802, 1286, 1465, 1508, 1509, 1988, 1989, 2227
StyI CCWWGG 4 cut(s) 308, 971, 1053, 1164
TaaI ACNGT 7 cut(s) 162, 290, 379, 903, 1527, 1669, 2134
TaiI ACGT 2 cut(s) 1064, 1380
TaqI TCGA 5 cut(s) 44, 433, 562, 1735, 1903
TaqII GACCGA 2 cut(s) 30, 1530
TatI WGTACW 3 cut(s) 709, 1664, 2176
TfiI GAWTC 6 cut(s) 8, 188, 767, 776, 1617, 1964
Tru1I TTAA 7 cut(s) 20, 234, 413, 1476, 1739, 2015, 2202
Tru9I TTAA 7 cut(s) 20, 234, 413, 1476, 1739, 2015, 2202
TscAI CASTG 7 cut(s) 72, 222, 382, 1353, 1771, 1869, 2314
TseFI GTSAC 6 cut(s) 368, 754, 1373, 1502, 1686, 1912
Tsp45I GTSAC 6 cut(s) 368, 754, 1373, 1502, 1686, 1912
TspDTI ATGAA 9 cut(s) 707, 759, 909, 1191, 1410, 1599, 1950, 2207, 2211
TspGWI ACGGA 1 cut(s) 20
TspMI CCCGGG 2 cut(s) 1509, 1989
TspRI CASTG 7 cut(s) 72, 222, 382, 1353, 1771, 1869, 2314
VpaK11BI GGWCC 4 cut(s) 696, 968, 1513, 1867
XagI CCTNNNNNAGG 1 cut(s) 2232
XapI RAATTY 4 cut(s) 126, 1141, 1461, 1518
XbaI TCTAGA 1 cut(s) 1435
XceI RCATGY 1 cut(s) 1824
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XmaI CCCGGG 2 cut(s) 1509, 1989
XmnI GAANNNNTTC 2 cut(s) 1033, 1621
XspI CTAG 9 cut(s) 113, 207, 486, 954, 1107, 1137, 1436, 1635, 2371
ZrmI AGTACT 1 cut(s) 2178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.