Rw6G024990

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001434
Physical Location & Seq
Forward (+)
48221915 .. 48228697
6783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024990.1

Sequence Viewer

Length: 2349 bp
ATGAAGTCCGATCTTATGATGACGGGGCCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGCAAGTCACCACTGCAGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTAGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCCGATGGAAGAACTGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACCCCCTGGGTGGTGAGGTTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGGGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCAACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAGTGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACGTCAGTTTGAAGCAGTTGCAAATGCAACAGAGCAGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAACGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTCGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGTCCAACATAATGGTTCTTCTAATTTAGCACCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCGGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAATCTGGGGATGGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTACGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGATGCTGAACCTGGATTACAAAGTGTAGTCCATCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTCGCGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCATATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATGTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGAGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTACAAGAGAGACCTTTGCTAAATTGGATGCATCTTCTTGTTAAATTAGAAATTGGACAAAAGTCAAACCAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

782

Amino Acids

85.41

Weight (kDa)

6.56

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 106 - 216 1.5e-09 WDR55
Beta-prop_THOC3 PF25174 107 - 245 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 107 - 219 3.4e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 107 - 213 9e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 108 - 249 1e-21 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 108 - 222 6.2e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 108 - 212 7.2e-11 WDHD1 first WD40 domain
EIF3I PF24805 108 - 204 9.3e-06 EIF3I
WD40_Prp19 PF24814 109 - 238 1.6e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 110 - 217 2.4e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 147 - 237 1.3e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1349
AccB7I CCANNNNNTGG 1 cut(s) 1478
AccI GTMKAC 2 cut(s) 2005, 2082
AccII CGCG 1 cut(s) 1922
AciI CCGC 3 cut(s) 63, 1672, 1746
AclI AACGTT 1 cut(s) 834
AclWI GGATC 5 cut(s) 501, 522, 547, 1238, 1954
AcoI YGGCCR 2 cut(s) 60, 421
AcsI RAATTY 2 cut(s) 114, 159
AcuI CTGAAG 2 cut(s) 744, 1332
AcvI CACGTG 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 2008
AdeI CACNNNGTG 3 cut(s) 362, 373, 622
AfaI GTAC 7 cut(s) 281, 294, 1470, 2058, 2066, 2115, 2274
AfeI AGCGCT 1 cut(s) 1444
AfiI CCNNNNNNNGG 6 cut(s) 442, 859, 1328, 1478, 1839, 2165
AflIII ACRYGT 1 cut(s) 1384
AgsI TTSAA 4 cut(s) 248, 673, 998, 1914
AjiI CACGTC 1 cut(s) 1977
AjnI CCWGG 4 cut(s) 275, 437, 1786, 2268
AjuI GAANNNNNNNTTGG 4 cut(s) 1290, 1322, 1890, 1922
Alw21I GWGCWC 1 cut(s) 2230
Alw26I GTCTC 3 cut(s) 660, 1091, 2275
AlwI GGATC 5 cut(s) 501, 522, 547, 1238, 1954
AlwNI CAGNNNCTG 3 cut(s) 282, 1478, 1586
Ama87I CYCGRG 3 cut(s) 123, 1892, 1926
Aor51HI AGCGCT 1 cut(s) 1444
AoxI GGCC 5 cut(s) 26, 60, 193, 229, 421
ApoI RAATTY 2 cut(s) 114, 159
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AseI ATTAAT 2 cut(s) 1164, 1991
Asp700I GAANNNNTTC 1 cut(s) 1182
AspLEI GCGC 1 cut(s) 1445
AspS9I GGNCC 4 cut(s) 26, 194, 432, 956
AsuC2I CCSGG 4 cut(s) 1429, 1840, 1927, 1928
AsuHPI GGTGA 6 cut(s) 62, 374, 457, 698, 897, 1962
AvaI CYCGRG 3 cut(s) 123, 1892, 1926
AvaII GGWCC 2 cut(s) 432, 956
BaeGI GKGCMC 1 cut(s) 1715
BaeI ACNNNNGTAYC 4 cut(s) 1407, 1440, 2040, 2073
BalI TGGCCA 1 cut(s) 423
BbrPI CACGTG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 2230
BbvCI CCTCAGC 1 cut(s) 738
BccI CCATC 9 cut(s) 329, 561, 916, 938, 1066, 1478, 1508, 1815, 2036
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 4 cut(s) 277, 439, 1788, 2270
BciVI GTATCC 1 cut(s) 1435
BcnI CCSGG 4 cut(s) 1429, 1840, 1927, 1928
BcoDI GTCTC 3 cut(s) 660, 1091, 2275
BfaI CTAG 5 cut(s) 141, 480, 599, 843, 2121
BfmI CTRYAG 6 cut(s) 76, 912, 1116, 1578, 1587, 2083
BfoI RGCGCY 1 cut(s) 1446
BfuI GTATCC 1 cut(s) 1435
BlpI GCTNAGC 2 cut(s) 222, 1527
BmcAI AGTACT 1 cut(s) 2115
Bme1390I CCNGG 8 cut(s) 277, 439, 1429, 1788, 1840, 1927, 1928, 2270
Bme18I GGWCC 2 cut(s) 432, 956
BmeT110I CYCGRG 3 cut(s) 123, 1892, 1926
BmgBI CACGTC 1 cut(s) 1977
BmgT120I GGNCC 4 cut(s) 26, 194, 432, 956
BmiI GGNNCC 4 cut(s) 27, 434, 452, 1767
BmrFI CCNGG 8 cut(s) 277, 439, 1429, 1788, 1840, 1927, 1928, 2270
BoxI GACNNNNGTC 1 cut(s) 2332
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 2 cut(s) 642, 2198
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 222, 1527
BpuEI CTTGAG 1 cut(s) 2096
BpuMI CCSGG 4 cut(s) 1429, 1840, 1927, 1928
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 2008
BsaI GGTCTC 1 cut(s) 2275
BsaXI ACNNNNNCTCC 2 cut(s) 1024, 1054
Bsc4I CCNNNNNNNGG 6 cut(s) 442, 859, 1328, 1478, 1839, 2165
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 6 cut(s) 196, 400, 1549, 1575, 1963, 2215
Bse3DI GCAATG 2 cut(s) 312, 1410
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 4 cut(s) 277, 439, 1788, 2270
BseGI GGATG 8 cut(s) 566, 949, 1489, 1783, 1829, 1843, 2155, 2304
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 6 cut(s) 442, 859, 1328, 1478, 1839, 2165
BseMI GCAATG 2 cut(s) 312, 1410
BseMII CTCAG 7 cut(s) 189, 519, 729, 1479, 1541, 1866, 1971
BseNI ACTGG 6 cut(s) 196, 400, 1549, 1575, 1963, 2215
BseRI GAGGAG 2 cut(s) 111, 288
BseSI GKGCMC 1 cut(s) 1715
BseX3I CGGCCG 1 cut(s) 60
BseYI CCCAGC 2 cut(s) 1334, 2165
BsgI GTGCAG 2 cut(s) 1926, 2145
Bsh1236I CGCG 1 cut(s) 1922
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 28, 62, 195, 231, 423
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 2230
BsiHKCI CYCGRG 3 cut(s) 123, 1892, 1926
BsiSI CCGG 5 cut(s) 59, 792, 1428, 1840, 1927
BslFI GGGAC 2 cut(s) 315, 1909
BslI CCNNNNNNNGG 6 cut(s) 442, 859, 1328, 1478, 1839, 2165
BsmAI GTCTC 3 cut(s) 660, 1091, 2275
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 2 cut(s) 315, 1909
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 5 cut(s) 28, 62, 195, 231, 423
Bso31I GGTCTC 1 cut(s) 2275
BsoBI CYCGRG 3 cut(s) 123, 1892, 1926
Bsp1286I GDGCHC 2 cut(s) 1715, 2230
Bsp1407I TGTACA 1 cut(s) 2064
Bsp143I GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
Bsp1720I GCTNAGC 2 cut(s) 222, 1527
Bsp19I CCATGG 4 cut(s) 570, 1044, 1092, 2011
BspACI CCGC 3 cut(s) 63, 1672, 1746
BspANI GGCC 5 cut(s) 28, 62, 195, 231, 423
BspCNI CTCAG 7 cut(s) 190, 520, 730, 1478, 1540, 1865, 1972
BspFNI CGCG 1 cut(s) 1922
BspLI GGNNCC 4 cut(s) 27, 434, 452, 1767
BspMAI CTGCAG 2 cut(s) 80, 1591
BspPI GGATC 5 cut(s) 501, 522, 547, 1238, 1954
BspTNI GGTCTC 1 cut(s) 2275
BsrDI GCAATG 2 cut(s) 312, 1410
BsrFI RCCGGY 1 cut(s) 58
BsrGI TGTACA 1 cut(s) 2064
BsrI ACTGG 6 cut(s) 196, 400, 1549, 1575, 1963, 2215
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
BssNI GRCGYC 1 cut(s) 2008
BssT1I CCWWGG 6 cut(s) 302, 570, 1044, 1092, 1273, 2011
Bst2UI CCWGG 4 cut(s) 277, 439, 1788, 2270
Bst4CI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1606, 2056, 2071, 2234
Bst6I CTCTTC 4 cut(s) 190, 763, 1200, 2025
BstACI GRCGYC 1 cut(s) 2008
BstAUI TGTACA 1 cut(s) 2064
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 5 cut(s) 60, 1113, 1130, 1759, 2149
BstDSI CCRYGG 4 cut(s) 570, 1044, 1092, 2011
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 8 cut(s) 566, 949, 1489, 1783, 1829, 1843, 2155, 2304
BstFNI CGCG 1 cut(s) 1922
BstH2I RGCGCY 1 cut(s) 1446
BstHHI GCGC 1 cut(s) 1445
BstKTI GATC 8 cut(s) 13, 46, 496, 517, 542, 751, 1246, 1962
BstMAI GTCTC 3 cut(s) 660, 1091, 2275
BstMBI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 8 cut(s) 201, 572, 581, 1580, 1583, 1754, 1928, 1937
BstNI CCWGG 4 cut(s) 277, 439, 1788, 2270
BstNSI RCATGY 4 cut(s) 953, 970, 1388, 1761
BstPAI GACNNNNGTC 1 cut(s) 2332
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 8 cut(s) 275, 437, 1427, 1786, 1838, 1925, 1926, 2268
BstSFI CTRYAG 6 cut(s) 76, 912, 1116, 1578, 1587, 2083
BstSLI GKGCMC 1 cut(s) 1715
BstUI CGCG 1 cut(s) 1922
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 514, 1243
BstXI CCANNNNNNTGG 2 cut(s) 1254, 1361
BstYI RGATCY 2 cut(s) 514, 1243
BstZI CGGCCG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1435
BsuRI GGCC 5 cut(s) 28, 62, 195, 231, 423
BtgI CCRYGG 4 cut(s) 570, 1044, 1092, 2011
BtrI CACGTC 1 cut(s) 1977
BtsCI GGATG 8 cut(s) 566, 949, 1489, 1783, 1829, 1843, 2155, 2304
BtsI GCAGTG 3 cut(s) 73, 702, 1708
BtsIMutI CAGTG 9 cut(s) 73, 189, 369, 702, 1568, 1602, 1708, 2067, 2239
Cac8I GCNNGC 5 cut(s) 60, 1113, 1130, 1759, 2149
CaiI CAGNNNCTG 3 cut(s) 282, 1478, 1586
CfoI GCGC 1 cut(s) 1445
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 4 cut(s) 26, 194, 432, 956
Cfr9I CCCGGG 1 cut(s) 1926
CseI GACGC 2 cut(s) 1911, 2016
Csp6I GTAC 7 cut(s) 280, 293, 1469, 2057, 2065, 2114, 2273
CviQI GTAC 7 cut(s) 280, 293, 1469, 2057, 2065, 2114, 2273
DpnI GATC 8 cut(s) 12, 45, 495, 516, 541, 750, 1245, 1961
DpnII GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
DraIII CACNNNGTG 3 cut(s) 362, 373, 622
DrdI GACNNNNNNGTC 1 cut(s) 1349
DseDI GACNNNNNNGTC 1 cut(s) 1349
EaeI YGGCCR 2 cut(s) 60, 421
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 190, 763, 1200, 2025
EarI CTCTTC 4 cut(s) 190, 763, 1200, 2025
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 6 cut(s) 302, 570, 1044, 1092, 1273, 2011
Eco31I GGTCTC 1 cut(s) 2275
Eco47I GGWCC 2 cut(s) 432, 956
Eco47III AGCGCT 1 cut(s) 1444
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 744, 1332
Eco72I CACGTG 1 cut(s) 545
Eco88I CYCGRG 3 cut(s) 123, 1892, 1926
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 2 cut(s) 26, 432
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 275, 437, 1786, 2268
EcoT14I CCWWGG 6 cut(s) 302, 570, 1044, 1092, 1273, 2011
EcoT22I ATGCAT 2 cut(s) 1763, 2304
ErhI CCWWGG 6 cut(s) 302, 570, 1044, 1092, 1273, 2011
Esp3I CGTCTC 1 cut(s) 660
FalI AAGNNNNNCTT 2 cut(s) 2187, 2219
FaqI GGGAC 2 cut(s) 315, 1909
FauNDI CATATG 1 cut(s) 879
FblI GTMKAC 2 cut(s) 2005, 2082
FokI GGATG 8 cut(s) 553, 956, 1496, 1790, 1816, 1830, 2142, 2311
FspBI CTAG 5 cut(s) 141, 480, 599, 843, 2121
GlaI GCGC 1 cut(s) 1444
GsaI CCCAGC 2 cut(s) 1338, 2169
GsuI CTGGAG 2 cut(s) 642, 2198
HaeII RGCGCY 1 cut(s) 1446
HaeIII GGCC 5 cut(s) 28, 62, 195, 231, 423
HapII CCGG 5 cut(s) 59, 792, 1428, 1840, 1927
HgaI GACGC 2 cut(s) 1911, 2016
HhaI GCGC 1 cut(s) 1445
Hin1I GRCGYC 1 cut(s) 2008
Hin6I GCGC 1 cut(s) 1443
HinP1I GCGC 1 cut(s) 1443
HincII GTYRAC 3 cut(s) 309, 1284, 2006
HindII GTYRAC 3 cut(s) 309, 1284, 2006
HindIII AAGCTT 1 cut(s) 2201
HpaI GTTAAC 1 cut(s) 1284
HpaII CCGG 5 cut(s) 59, 792, 1428, 1840, 1927
HphI GGTGA 6 cut(s) 62, 374, 457, 698, 897, 1962
Hpy166II GTNNAC 7 cut(s) 309, 686, 848, 1284, 2006, 2067, 2083
Hpy188III TCNNGA 9 cut(s) 332, 497, 612, 659, 752, 1769, 1811, 1818, 2075
Hpy8I GTNNAC 7 cut(s) 309, 686, 848, 1284, 2006, 2067, 2083
Hpy99I CGWCG 1 cut(s) 2010
HpyAV CCTTC 7 cut(s) 39, 242, 393, 468, 819, 1653, 2189
HpyCH4III ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1606, 2056, 2071, 2234
HpyCH4IV ACGT 4 cut(s) 544, 834, 988, 1976
HpyF10VI GCNNNNNNNGC 8 cut(s) 201, 572, 581, 1580, 1583, 1754, 1928, 1937
HpySE526I ACGT 4 cut(s) 544, 834, 988, 1976
Hsp92I GRCGYC 1 cut(s) 2008
HspAI GCGC 1 cut(s) 1443
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 1284
Kzo9I GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
LmnI GCTCC 3 cut(s) 724, 1258, 1654
MaeI CTAG 5 cut(s) 141, 480, 599, 843, 2121
MaeII ACGT 4 cut(s) 544, 834, 988, 1976
MaeIII GTNAC 8 cut(s) 68, 255, 362, 903, 962, 973, 1593, 1623
MalI GATC 8 cut(s) 12, 45, 495, 516, 541, 750, 1245, 1961
MboI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
MflI RGATCY 2 cut(s) 514, 1243
MhlI GDGCHC 2 cut(s) 1715, 2230
MlsI TGGCCA 1 cut(s) 423
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 3 cut(s) 263, 749, 2217
MmeI TCCRAC 1 cut(s) 1378
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 2 cut(s) 1763, 2304
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 1182
MscI TGGCCA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 843
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 1586
MspI CCGG 5 cut(s) 59, 792, 1428, 1840, 1927
MspR9I CCNGG 8 cut(s) 277, 439, 1429, 1788, 1840, 1927, 1928, 2270
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 4 cut(s) 277, 439, 1788, 2270
MvnI CGCG 1 cut(s) 1922
MwoI GCNNNNNNNGC 8 cut(s) 201, 572, 581, 1580, 1583, 1754, 1928, 1937
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 4 cut(s) 1429, 1840, 1927, 1928
NcoI CCATGG 4 cut(s) 570, 1044, 1092, 2011
NdeI CATATG 1 cut(s) 879
NdeII GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
NgoMIV GCCGGC 1 cut(s) 58
NlaIV GGNNCC 4 cut(s) 27, 434, 452, 1767
NmeAIII GCCGAG 1 cut(s) 1192
NmuCI GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1623
NsiI ATGCAT 2 cut(s) 1763, 2304
NspI RCATGY 4 cut(s) 953, 970, 1388, 1761
PaeI GCATGC 1 cut(s) 1761
PaeR7I CTCGAG 2 cut(s) 123, 1892
PasI CCCWGGG 1 cut(s) 438
PciI ACATGT 1 cut(s) 1384
PcsI WCGNNNNNNNCGW 1 cut(s) 1219
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1182
PfeI GAWTC 8 cut(s) 179, 764, 1154, 1189, 1475, 1545, 1737, 1814
PflMI CCANNNNNTGG 1 cut(s) 1478
PleI GAGTC 3 cut(s) 262, 749, 2216
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 3 cut(s) 262, 749, 2216
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 1 cut(s) 432
PscI ACATGT 1 cut(s) 1384
PshAI GACNNNNGTC 1 cut(s) 2332
PshBI ATTAAT 2 cut(s) 1164, 1991
Psp1406I AACGTT 1 cut(s) 834
Psp5II RGGWCCY 1 cut(s) 432
Psp6I CCWGG 4 cut(s) 275, 437, 1786, 2268
PspCI CACGTG 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 1334, 2165
PspGI CCWGG 4 cut(s) 275, 437, 1786, 2268
PspN4I GGNNCC 4 cut(s) 27, 434, 452, 1767
PspPI GGNCC 4 cut(s) 26, 194, 432, 956
PspPPI RGGWCCY 1 cut(s) 432
PspXI VCTCGAGB 2 cut(s) 123, 1892
PsrI GAACNNNNNNTAC 2 cut(s) 1776, 1808
PstI CTGCAG 2 cut(s) 80, 1591
PstNI CAGNNNCTG 3 cut(s) 282, 1478, 1586
PsuI RGATCY 2 cut(s) 514, 1243
PvuII CAGCTG 1 cut(s) 1586
RsaI GTAC 7 cut(s) 281, 294, 1470, 2058, 2066, 2115, 2274
RsaNI GTAC 7 cut(s) 280, 293, 1469, 2057, 2065, 2114, 2273
RseI CAYNNNNRTG 1 cut(s) 843
SalI GTCGAC 1 cut(s) 2004
Sau3AI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1243, 1959
Sau96I GGNCC 4 cut(s) 26, 194, 432, 956
ScaI AGTACT 1 cut(s) 2115
SchI GAGTC 3 cut(s) 263, 749, 2217
ScrFI CCNGG 8 cut(s) 277, 439, 1429, 1788, 1840, 1927, 1928, 2270
SduI GDGCHC 2 cut(s) 1715, 2230
SfcI CTRYAG 6 cut(s) 76, 912, 1116, 1578, 1587, 2083
Sfr274I CTCGAG 2 cut(s) 123, 1892
SinI GGWCC 2 cut(s) 432, 956
SlaI CTCGAG 2 cut(s) 123, 1892
SmaI CCCGGG 1 cut(s) 1928
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 3 cut(s) 123, 1892, 2075
SmoI CTYRAG 3 cut(s) 123, 1892, 2075
SphI GCATGC 1 cut(s) 1761
SsiI CCGC 3 cut(s) 63, 1672, 1746
SspI AATATT 1 cut(s) 1183
SspMI CTAG 5 cut(s) 141, 480, 599, 843, 2121
StyD4I CCNGG 8 cut(s) 275, 437, 1427, 1786, 1838, 1925, 1926, 2268
StyI CCWWGG 6 cut(s) 302, 570, 1044, 1092, 1273, 2011
TaaI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1606, 2056, 2071, 2234
TaiI ACGT 4 cut(s) 547, 837, 991, 1979
TaqI TCGA 6 cut(s) 124, 556, 1313, 1893, 1958, 2005
TatI WGTACW 2 cut(s) 2064, 2113
TauI GCSGC 3 cut(s) 65, 1674, 1748
TfiI GAWTC 8 cut(s) 179, 764, 1154, 1189, 1475, 1545, 1737, 1814
TscAI CASTG 9 cut(s) 80, 196, 376, 702, 1575, 1609, 1708, 2074, 2239
TseFI GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1623
Tsp45I GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1623
TspDTI ATGAA 9 cut(s) 17, 40, 228, 569, 827, 1149, 1187, 1536, 2144
TspGWI ACGGA 1 cut(s) 2148
TspMI CCCGGG 1 cut(s) 1926
TspRI CASTG 9 cut(s) 80, 196, 376, 702, 1575, 1609, 1708, 2074, 2239
Van91I CCANNNNNTGG 1 cut(s) 1478
VpaK11BI GGWCC 2 cut(s) 432, 956
VspI ATTAAT 2 cut(s) 1164, 1991
XapI RAATTY 2 cut(s) 114, 159
XceI RCATGY 4 cut(s) 953, 970, 1388, 1761
XcmI CCANNNNNNNNNTGG 1 cut(s) 1814
XhoI CTCGAG 2 cut(s) 123, 1892
XmaI CCCGGG 1 cut(s) 1926
XmiI GTMKAC 2 cut(s) 2005, 2082
XmnI GAANNNNTTC 1 cut(s) 1182
XspI CTAG 5 cut(s) 141, 480, 599, 843, 2121
ZrmI AGTACT 1 cut(s) 2115
Zsp2I ATGCAT 2 cut(s) 1763, 2304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.