Rh6CG293000

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001434
Physical Location & Seq
Forward (+)
47071143 .. 47076701
5559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG293000.1

Sequence Viewer

Length: 2268 bp
ATGAAGTCCGATCTTATGATGACGGGGCCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAAAGTCACCACTGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTGGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCTGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGATTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAATGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACATGAAGCAGTTGCAAATGCAACAGAGCGGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAATGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTTGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGCACCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCAGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAGTCTGGGGATGGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGACGCTGAACCTGGATTACAAAGTGTAGTCCTTCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTCACGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCACATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGTGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

755

Amino Acids

82.35

Weight (kDa)

6.38

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 105 - 215 1.4e-09 WDR55
Beta-prop_THOC3 PF25174 106 - 244 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 106 - 218 3.3e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 106 - 212 8.5e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 107 - 248 9.4e-22 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 107 - 221 5.9e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 107 - 211 6.8e-11 WDHD1 first WD40 domain
EIF3I PF24805 107 - 203 8.8e-06 EIF3I
WD40_Prp19 PF24814 108 - 237 1.5e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 109 - 216 2.3e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 112 - 203 2e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 146 - 236 1.2e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 289
AccB1I GGYRCC 1 cut(s) 289
AccB7I CCANNNNNTGG 1 cut(s) 1469
AccBSI CCGCTC 1 cut(s) 1012
AccI GTMKAC 2 cut(s) 1996, 2073
AciI CCGC 4 cut(s) 483, 1012, 1663, 1737
AclI AACGTT 1 cut(s) 831
AclWI GGATC 5 cut(s) 498, 519, 544, 1229, 1945
AcoI YGGCCR 2 cut(s) 60, 418
AcsI RAATTY 2 cut(s) 111, 156
AcuI CTGAAG 2 cut(s) 741, 1323
AcvI CACGTG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 1999
AdeI CACNNNGTG 3 cut(s) 359, 370, 619
AfaI GTAC 5 cut(s) 278, 291, 1461, 2049, 2106
AfeI AGCGCT 1 cut(s) 1435
AfiI CCNNNNNNNGG 5 cut(s) 856, 1319, 1469, 1830, 2156
AflIII ACRYGT 1 cut(s) 1375
AgsI TTSAA 4 cut(s) 245, 670, 1802, 1905
AjiI CACGTC 2 cut(s) 1914, 1968
AjnI CCWGG 5 cut(s) 272, 434, 1418, 1777, 2259
AjuI GAANNNNNNNTTGG 4 cut(s) 1281, 1313, 1881, 1913
Alw21I GWGCWC 2 cut(s) 1977, 2221
Alw26I GTCTC 2 cut(s) 657, 1082
AlwI GGATC 5 cut(s) 498, 519, 544, 1229, 1945
AlwNI CAGNNNCTG 3 cut(s) 279, 1469, 1577
Ama87I CYCGRG 3 cut(s) 120, 1883, 1917
Aor51HI AGCGCT 1 cut(s) 1435
AoxI GGCC 5 cut(s) 26, 60, 190, 226, 418
ApoI RAATTY 2 cut(s) 111, 156
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AseI ATTAAT 2 cut(s) 1155, 1982
Asp700I GAANNNNTTC 1 cut(s) 1173
Asp718I GGTACC 1 cut(s) 289
AspLEI GCGC 1 cut(s) 1436
AspS9I GGNCC 3 cut(s) 26, 191, 953
AsuC2I CCSGG 3 cut(s) 1831, 1918, 1919
AsuHPI GGTGA 6 cut(s) 62, 371, 454, 695, 894, 1953
AvaI CYCGRG 3 cut(s) 120, 1883, 1917
AvaII GGWCC 1 cut(s) 953
BaeGI GKGCMC 1 cut(s) 1706
BaeI ACNNNNGTAYC 4 cut(s) 1398, 1431, 2031, 2064
BalI TGGCCA 1 cut(s) 420
BanI GGYRCC 1 cut(s) 289
BbrPI CACGTG 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 1977, 2221
BbvCI CCTCAGC 1 cut(s) 735
BccI CCATC 8 cut(s) 326, 558, 913, 935, 1057, 1469, 1499, 2027
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 5 cut(s) 274, 436, 1420, 1779, 2261
BciVI GTATCC 1 cut(s) 1426
BcnI CCSGG 3 cut(s) 1831, 1918, 1919
BcoDI GTCTC 2 cut(s) 657, 1082
BfaI CTAG 4 cut(s) 138, 477, 596, 2112
BfmI CTRYAG 6 cut(s) 76, 909, 1107, 1569, 1578, 2074
BfoI RGCGCY 1 cut(s) 1437
BfuI GTATCC 1 cut(s) 1426
BlpI GCTNAGC 2 cut(s) 219, 1518
BmcAI AGTACT 1 cut(s) 2106
Bme1390I CCNGG 8 cut(s) 274, 436, 1420, 1779, 1831, 1918, 1919, 2261
Bme18I GGWCC 1 cut(s) 953
BmeT110I CYCGRG 3 cut(s) 120, 1883, 1917
BmgBI CACGTC 2 cut(s) 1914, 1968
BmgT120I GGNCC 3 cut(s) 26, 191, 953
BmiI GGNNCC 3 cut(s) 27, 291, 1758
BmrFI CCNGG 8 cut(s) 274, 436, 1420, 1779, 1831, 1918, 1919, 2261
BmsI GCATC 8 cut(s) 205, 572, 614, 1069, 1089, 1296, 1649, 1843
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 639, 2189
Bpu10I CCTNAGC 1 cut(s) 735
Bpu1102I GCTNAGC 2 cut(s) 219, 1518
BpuEI CTTGAG 1 cut(s) 2087
BpuMI CCSGG 3 cut(s) 1831, 1918, 1919
BsaAI YACGTR 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 1999
BsaXI ACNNNNNCTCC 2 cut(s) 1015, 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 856, 1319, 1469, 1830, 2156
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 6 cut(s) 193, 397, 1540, 1566, 1954, 2206
Bse3DI GCAATG 2 cut(s) 309, 1401
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 5 cut(s) 274, 436, 1420, 1779, 2261
BseGI GGATG 6 cut(s) 563, 946, 1480, 1820, 1834, 2146
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 5 cut(s) 856, 1319, 1469, 1830, 2156
BseMI GCAATG 2 cut(s) 309, 1401
BseMII CTCAG 7 cut(s) 186, 516, 726, 1470, 1532, 1857, 1962
BseNI ACTGG 6 cut(s) 193, 397, 1540, 1566, 1954, 2206
BseRI GAGGAG 2 cut(s) 108, 285
BseSI GKGCMC 1 cut(s) 1706
BseX3I CGGCCG 1 cut(s) 60
BseYI CCCAGC 2 cut(s) 1325, 2156
BsgI GTGCAG 2 cut(s) 1917, 2136
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 28, 62, 192, 228, 420
BshNI GGYRCC 1 cut(s) 289
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 1977, 2221
BsiHKCI CYCGRG 3 cut(s) 120, 1883, 1917
BsiSI CCGG 4 cut(s) 59, 789, 1831, 1918
BslFI GGGAC 1 cut(s) 1900
BslI CCNNNNNNNGG 5 cut(s) 856, 1319, 1469, 1830, 2156
BsmAI GTCTC 2 cut(s) 657, 1082
BsmBI CGTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 1900
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 5 cut(s) 28, 62, 192, 228, 420
BsoBI CYCGRG 3 cut(s) 120, 1883, 1917
Bsp1286I GDGCHC 3 cut(s) 1706, 1977, 2221
Bsp143I GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
Bsp1720I GCTNAGC 2 cut(s) 219, 1518
Bsp19I CCATGG 4 cut(s) 567, 1035, 1083, 2002
BspACI CCGC 4 cut(s) 483, 1012, 1663, 1737
BspANI GGCC 5 cut(s) 28, 62, 192, 228, 420
BspCNI CTCAG 7 cut(s) 187, 517, 727, 1469, 1531, 1856, 1963
BspLI GGNNCC 3 cut(s) 27, 291, 1758
BspMAI CTGCAG 2 cut(s) 80, 1582
BspPI GGATC 5 cut(s) 498, 519, 544, 1229, 1945
BspT107I GGYRCC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 309, 1401
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 6 cut(s) 193, 397, 1540, 1566, 1954, 2206
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
BssNI GRCGYC 1 cut(s) 1999
BssT1I CCWWGG 7 cut(s) 299, 567, 1035, 1083, 1202, 1264, 2002
Bst2UI CCWGG 5 cut(s) 274, 436, 1420, 1779, 2261
Bst4CI ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1597, 2047, 2062, 2225
Bst6I CTCTTC 4 cut(s) 187, 760, 1191, 2016
BstACI GRCGYC 1 cut(s) 1999
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 5 cut(s) 60, 1104, 1121, 1750, 2140
BstDSI CCRYGG 4 cut(s) 567, 1035, 1083, 2002
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 6 cut(s) 563, 946, 1480, 1820, 1834, 2146
BstH2I RGCGCY 1 cut(s) 1437
BstHHI GCGC 1 cut(s) 1436
BstKTI GATC 8 cut(s) 13, 46, 493, 514, 539, 748, 1237, 1953
BstMAI GTCTC 2 cut(s) 657, 1082
BstMBI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 7 cut(s) 198, 569, 578, 1571, 1574, 1745, 1928
BstNI CCWGG 5 cut(s) 274, 436, 1420, 1779, 2261
BstNSI RCATGY 4 cut(s) 950, 967, 1379, 1752
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 8 cut(s) 272, 434, 1418, 1777, 1829, 1916, 1917, 2259
BstSFI CTRYAG 6 cut(s) 76, 909, 1107, 1569, 1578, 2074
BstSLI GKGCMC 1 cut(s) 1706
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 511, 1234
BstXI CCANNNNNNTGG 2 cut(s) 1245, 1352
BstYI RGATCY 2 cut(s) 511, 1234
BstZI CGGCCG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1426
BsuRI GGCC 5 cut(s) 28, 62, 192, 228, 420
BtgI CCRYGG 4 cut(s) 567, 1035, 1083, 2002
BtrI CACGTC 2 cut(s) 1914, 1968
BtsCI GGATG 6 cut(s) 563, 946, 1480, 1820, 1834, 2146
BtsI GCAGTG 3 cut(s) 73, 699, 1699
BtsIMutI CAGTG 9 cut(s) 73, 186, 366, 699, 1559, 1593, 1699, 2058, 2230
Cac8I GCNNGC 5 cut(s) 60, 1104, 1121, 1750, 2140
CaiI CAGNNNCTG 3 cut(s) 279, 1469, 1577
CfoI GCGC 1 cut(s) 1436
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 26, 191, 953
Cfr9I CCCGGG 1 cut(s) 1917
CseI GACGC 2 cut(s) 1778, 2007
Csp6I GTAC 5 cut(s) 277, 290, 1460, 2048, 2105
CviQI GTAC 5 cut(s) 277, 290, 1460, 2048, 2105
DpnI GATC 8 cut(s) 12, 45, 492, 513, 538, 747, 1236, 1952
DpnII GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
DraIII CACNNNGTG 3 cut(s) 359, 370, 619
EaeI YGGCCR 2 cut(s) 60, 418
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 187, 760, 1191, 2016
EarI CTCTTC 4 cut(s) 187, 760, 1191, 2016
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 7 cut(s) 299, 567, 1035, 1083, 1202, 1264, 2002
Eco47I GGWCC 1 cut(s) 953
Eco47III AGCGCT 1 cut(s) 1435
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 741, 1323
Eco72I CACGTG 1 cut(s) 542
Eco88I CYCGRG 3 cut(s) 120, 1883, 1917
Eco91I GGTNACC 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 359
EcoRII CCWGG 5 cut(s) 272, 434, 1418, 1777, 2259
EcoT14I CCWWGG 7 cut(s) 299, 567, 1035, 1083, 1202, 1264, 2002
EcoT22I ATGCAT 1 cut(s) 1754
ErhI CCWWGG 7 cut(s) 299, 567, 1035, 1083, 1202, 1264, 2002
Esp3I CGTCTC 1 cut(s) 657
FalI AAGNNNNNCTT 2 cut(s) 2178, 2210
FaqI GGGAC 1 cut(s) 1900
FauNDI CATATG 1 cut(s) 876
FblI GTMKAC 2 cut(s) 1996, 2073
FokI GGATG 6 cut(s) 550, 953, 1487, 1807, 1821, 2133
FspBI CTAG 4 cut(s) 138, 477, 596, 2112
GlaI GCGC 1 cut(s) 1435
GsaI CCCAGC 2 cut(s) 1329, 2160
GsuI CTGGAG 2 cut(s) 639, 2189
HaeII RGCGCY 1 cut(s) 1437
HaeIII GGCC 5 cut(s) 28, 62, 192, 228, 420
HapII CCGG 4 cut(s) 59, 789, 1831, 1918
HgaI GACGC 2 cut(s) 1778, 2007
HhaI GCGC 1 cut(s) 1436
Hin1I GRCGYC 1 cut(s) 1999
Hin6I GCGC 1 cut(s) 1434
HinP1I GCGC 1 cut(s) 1434
HincII GTYRAC 3 cut(s) 306, 1275, 1997
HindII GTYRAC 3 cut(s) 306, 1275, 1997
HindIII AAGCTT 1 cut(s) 2192
HpaI GTTAAC 1 cut(s) 1275
HpaII CCGG 4 cut(s) 59, 789, 1831, 1918
HphI GGTGA 6 cut(s) 62, 371, 454, 695, 894, 1953
Hpy166II GTNNAC 5 cut(s) 306, 683, 1275, 1997, 2074
Hpy188III TCNNGA 9 cut(s) 329, 494, 609, 656, 749, 1760, 1802, 1809, 2066
Hpy8I GTNNAC 5 cut(s) 306, 683, 1275, 1997, 2074
Hpy99I CGWCG 1 cut(s) 2001
HpyAV CCTTC 8 cut(s) 39, 239, 390, 465, 816, 1644, 1808, 2180
HpyCH4III ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1597, 2047, 2062, 2225
HpyCH4IV ACGT 4 cut(s) 541, 831, 1913, 1967
HpyF10VI GCNNNNNNNGC 7 cut(s) 198, 569, 578, 1571, 1574, 1745, 1928
HpySE526I ACGT 4 cut(s) 541, 831, 1913, 1967
Hsp92I GRCGYC 1 cut(s) 1999
HspAI GCGC 1 cut(s) 1434
KpnI GGTACC 1 cut(s) 293
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 1275
Kzo9I GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
LmnI GCTCC 3 cut(s) 721, 1249, 1645
LweI GCATC 8 cut(s) 205, 572, 614, 1069, 1089, 1296, 1649, 1843
MaeI CTAG 4 cut(s) 138, 477, 596, 2112
MaeII ACGT 4 cut(s) 541, 831, 1913, 1967
MaeIII GTNAC 8 cut(s) 68, 252, 359, 900, 959, 970, 1584, 1614
MalI GATC 8 cut(s) 12, 45, 492, 513, 538, 747, 1236, 1952
MbiI CCGCTC 1 cut(s) 1012
MboI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
MflI RGATCY 2 cut(s) 511, 1234
MhlI GDGCHC 3 cut(s) 1706, 1977, 2221
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 9 cut(s) 111, 156, 283, 378, 471, 1363, 1548, 1812, 1983
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 4 cut(s) 260, 746, 1475, 2208
Mox20I TGGCCA 1 cut(s) 420
Mph1103I ATGCAT 1 cut(s) 1754
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 1173
MscI TGGCCA 1 cut(s) 420
MseI TTAA 9 cut(s) 404, 1155, 1274, 1317, 1490, 1667, 1982, 2016, 2130
MslI CAYNNNNRTG 2 cut(s) 840, 1074
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 1577
MspI CCGG 4 cut(s) 59, 789, 1831, 1918
MspR9I CCNGG 8 cut(s) 274, 436, 1420, 1779, 1831, 1918, 1919, 2261
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 5 cut(s) 274, 436, 1420, 1779, 2261
MwoI GCNNNNNNNGC 7 cut(s) 198, 569, 578, 1571, 1574, 1745, 1928
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 3 cut(s) 1831, 1918, 1919
NcoI CCATGG 4 cut(s) 567, 1035, 1083, 2002
NdeI CATATG 1 cut(s) 876
NdeII GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
NgoMIV GCCGGC 1 cut(s) 58
NlaIV GGNNCC 3 cut(s) 27, 291, 1758
NmuCI GTSAC 6 cut(s) 68, 252, 359, 900, 970, 1614
NsiI ATGCAT 1 cut(s) 1754
NspI RCATGY 4 cut(s) 950, 967, 1379, 1752
PaeI GCATGC 1 cut(s) 1752
PaeR7I CTCGAG 2 cut(s) 120, 1883
PasI CCCWGGG 1 cut(s) 435
PciI ACATGT 1 cut(s) 1375
PctI GAATGC 1 cut(s) 646
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 8 cut(s) 176, 447, 761, 1145, 1180, 1536, 1728, 1805
PflMI CCANNNNNTGG 1 cut(s) 1469
PleI GAGTC 4 cut(s) 259, 746, 1474, 2207
PmaCI CACGTG 1 cut(s) 542
PmlI CACGTG 1 cut(s) 542
PpsI GAGTC 4 cut(s) 259, 746, 1474, 2207
Ppu21I YACGTR 1 cut(s) 542
PscI ACATGT 1 cut(s) 1375
PshBI ATTAAT 2 cut(s) 1155, 1982
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 5 cut(s) 272, 434, 1418, 1777, 2259
PspCI CACGTG 1 cut(s) 542
PspEI GGTNACC 1 cut(s) 359
PspFI CCCAGC 2 cut(s) 1325, 2156
PspGI CCWGG 5 cut(s) 272, 434, 1418, 1777, 2259
PspN4I GGNNCC 3 cut(s) 27, 291, 1758
PspPI GGNCC 3 cut(s) 26, 191, 953
PspXI VCTCGAGB 2 cut(s) 120, 1883
PsrI GAACNNNNNNTAC 2 cut(s) 1767, 1799
PstI CTGCAG 2 cut(s) 80, 1582
PstNI CAGNNNCTG 3 cut(s) 279, 1469, 1577
PsuI RGATCY 2 cut(s) 511, 1234
PvuII CAGCTG 1 cut(s) 1577
RsaI GTAC 5 cut(s) 278, 291, 1461, 2049, 2106
RsaNI GTAC 5 cut(s) 277, 290, 1460, 2048, 2105
RseI CAYNNNNRTG 2 cut(s) 840, 1074
SalI GTCGAC 1 cut(s) 1995
SaqAI TTAA 9 cut(s) 404, 1155, 1274, 1317, 1490, 1667, 1982, 2016, 2130
Sau3AI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1234, 1950
Sau96I GGNCC 3 cut(s) 26, 191, 953
ScaI AGTACT 1 cut(s) 2106
SchI GAGTC 4 cut(s) 260, 746, 1475, 2208
ScrFI CCNGG 8 cut(s) 274, 436, 1420, 1779, 1831, 1918, 1919, 2261
SduI GDGCHC 3 cut(s) 1706, 1977, 2221
SfaNI GCATC 8 cut(s) 205, 572, 614, 1069, 1089, 1296, 1649, 1843
SfcI CTRYAG 6 cut(s) 76, 909, 1107, 1569, 1578, 2074
Sfr274I CTCGAG 2 cut(s) 120, 1883
SinI GGWCC 1 cut(s) 953
SlaI CTCGAG 2 cut(s) 120, 1883
SmaI CCCGGG 1 cut(s) 1919
SmiMI CAYNNNNRTG 2 cut(s) 840, 1074
SmlI CTYRAG 3 cut(s) 120, 1883, 2066
SmoI CTYRAG 3 cut(s) 120, 1883, 2066
SphI GCATGC 1 cut(s) 1752
Sse9I AATT 9 cut(s) 111, 156, 283, 378, 471, 1363, 1548, 1812, 1983
SsiI CCGC 4 cut(s) 483, 1012, 1663, 1737
SspI AATATT 1 cut(s) 1174
SspMI CTAG 4 cut(s) 138, 477, 596, 2112
StyD4I CCNGG 8 cut(s) 272, 434, 1418, 1777, 1829, 1916, 1917, 2259
StyI CCWWGG 7 cut(s) 299, 567, 1035, 1083, 1202, 1264, 2002
TaaI ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1597, 2047, 2062, 2225
TaiI ACGT 4 cut(s) 544, 834, 1916, 1970
TaqI TCGA 6 cut(s) 121, 553, 1304, 1884, 1949, 1996
TasI AATT 9 cut(s) 111, 156, 283, 378, 471, 1363, 1548, 1812, 1983
TatI WGTACW 1 cut(s) 2104
TauI GCSGC 2 cut(s) 1665, 1739
TfiI GAWTC 8 cut(s) 176, 447, 761, 1145, 1180, 1536, 1728, 1805
Tru1I TTAA 9 cut(s) 404, 1155, 1274, 1317, 1490, 1667, 1982, 2016, 2130
Tru9I TTAA 9 cut(s) 404, 1155, 1274, 1317, 1490, 1667, 1982, 2016, 2130
TscAI CASTG 9 cut(s) 80, 193, 373, 699, 1566, 1600, 1699, 2065, 2230
TseFI GTSAC 6 cut(s) 68, 252, 359, 900, 970, 1614
Tsp45I GTSAC 6 cut(s) 68, 252, 359, 900, 970, 1614
TspGWI ACGGA 1 cut(s) 2139
TspMI CCCGGG 1 cut(s) 1917
TspRI CASTG 9 cut(s) 80, 193, 373, 699, 1566, 1600, 1699, 2065, 2230
Van91I CCANNNNNTGG 1 cut(s) 1469
VpaK11BI GGWCC 1 cut(s) 953
VspI ATTAAT 2 cut(s) 1155, 1982
XapI RAATTY 2 cut(s) 111, 156
XceI RCATGY 4 cut(s) 950, 967, 1379, 1752
XhoI CTCGAG 2 cut(s) 120, 1883
XmaI CCCGGG 1 cut(s) 1917
XmiI GTMKAC 2 cut(s) 1996, 2073
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 4 cut(s) 138, 477, 596, 2112
ZrmI AGTACT 1 cut(s) 2106
Zsp2I ATGCAT 1 cut(s) 1754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.