Rroxscaffold_7G00182550

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001434
Physical Location & Seq
Reverse (-)
21625378 .. 21632538
7161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182550.1

Sequence Viewer

Length: 2265 bp
ATGAAGTCCGATCTTATGATGACGGGACCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAGAGTCACCACTGCAGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATTGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTAGTACCTCCTCCAAGATCAACCATTGCAGCAGCATTTAGTCCTGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGGTTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCATGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACATCGACCTATTGCATCTATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAATTACAAAAAGCTGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCGCTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTCACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAGTGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAATAACATGCAAGTCACTTCTGCTTTACGTCAGTTTGAAGCAGTTGCAAATGCAACAGAGCAGAGTGATAGCACATCTTCTCCCATGGAGGTATTTCCATCAGTTATATCTCTTACTCATCTCAACGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCGCTTCATTCTGCTGAACCTCGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGTGCCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCGGGATTTCTGAAAGCGCCGGTTTGCATTTTCGCTTCTCAGTACCAGAATCTGGGGATAGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCTGCCTGTGTTGCATGCATGGTTCCTGATATGGAAGCTGAACCTGGACTACAAAGTGTTGTCCATCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTTATTTATGAGCTTCGCATATATTCACTTGAGGAGGAAACATTTGGTTCAATACTCACGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCAATCCAGTTCTCACCCACGTCTGAGCATATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGTGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTACTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

754

Amino Acids

82.28

Weight (kDa)

6.33

Isoelectric Point (pI)

52.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 106 - 236 7.9e-19 THOC3 beta-propeller domain
WDR55 PF24796 106 - 209 2.7e-08 WDR55
Beta-prop_WDR3_1st PF25173 107 - 208 2.9e-13 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 107 - 204 5.5e-06 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 108 - 246 3.2e-20 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 108 - 182 1.2e-09 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 108 - 222 8.2e-12 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 110 - 215 7.6e-08 WDR36/Utp21 second beta-propeller domain
WD40_Prp19 PF24814 112 - 234 1.3e-11 Prp19 WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1466
AccI GTMKAC 2 cut(s) 1993, 2070
AciI CCGC 3 cut(s) 486, 1184, 1660
AclI AACGTT 1 cut(s) 825
AclWI GGATC 4 cut(s) 501, 522, 547, 1229
AcoI YGGCCR 2 cut(s) 60, 421
AcsI RAATTY 2 cut(s) 114, 159
AcuI CTGAAG 2 cut(s) 735, 1320
AcyI GRCGYC 1 cut(s) 1996
AdeI CACNNNGTG 3 cut(s) 362, 373, 613
AfaI GTAC 5 cut(s) 281, 294, 1458, 2046, 2103
AfiI CCNNNNNNNGG 5 cut(s) 850, 1316, 1466, 1827, 2153
AflIII ACRYGT 1 cut(s) 1372
AgsI TTSAA 5 cut(s) 248, 664, 989, 1902, 1947
AjiI CACGTC 2 cut(s) 1911, 1965
AjnI CCWGG 4 cut(s) 275, 437, 1774, 2256
AjuI GAANNNNNNNTTGG 2 cut(s) 1278, 1310
Alw21I GWGCWC 1 cut(s) 2218
Alw26I GTCTC 2 cut(s) 651, 1082
AlwI GGATC 4 cut(s) 501, 522, 547, 1229
AlwNI CAGNNNCTG 3 cut(s) 282, 1466, 1574
Ama87I CYCGRG 2 cut(s) 123, 1914
AoxI GGCC 4 cut(s) 60, 193, 229, 421
ApoI RAATTY 2 cut(s) 114, 159
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AseI ATTAAT 2 cut(s) 1155, 1979
Asp700I GAANNNNTTC 1 cut(s) 1173
AspLEI GCGC 1 cut(s) 1433
AspS9I GGNCC 3 cut(s) 26, 194, 947
AsuC2I CCSGG 4 cut(s) 1417, 1828, 1915, 1916
AsuHPI GGTGA 6 cut(s) 62, 374, 457, 689, 888, 1950
AvaI CYCGRG 2 cut(s) 123, 1914
AvaII GGWCC 2 cut(s) 26, 947
BaeGI GKGCMC 1 cut(s) 1703
BaeI ACNNNNGTAYC 4 cut(s) 1395, 1428, 2028, 2061
BalI TGGCCA 1 cut(s) 423
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 2218
BbvCI CCTCAGC 1 cut(s) 729
BccI CCATC 7 cut(s) 329, 907, 929, 1057, 1496, 1803, 2024
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 4 cut(s) 277, 439, 1776, 2258
BciVI GTATCC 1 cut(s) 1423
BcnI CCSGG 4 cut(s) 1417, 1828, 1915, 1916
BcoDI GTCTC 2 cut(s) 651, 1082
BfaI CTAG 5 cut(s) 141, 480, 590, 834, 2109
BfmI CTRYAG 6 cut(s) 76, 903, 1107, 1566, 1575, 2071
BfoI RGCGCY 1 cut(s) 1434
BfuI GTATCC 1 cut(s) 1423
BlpI GCTNAGC 2 cut(s) 222, 1515
BmcAI AGTACT 1 cut(s) 2103
Bme1390I CCNGG 8 cut(s) 277, 439, 1417, 1776, 1828, 1915, 1916, 2258
Bme18I GGWCC 2 cut(s) 26, 947
BmeT110I CYCGRG 2 cut(s) 123, 1914
BmgBI CACGTC 2 cut(s) 1911, 1965
BmgT120I GGNCC 3 cut(s) 26, 194, 947
BmiI GGNNCC 3 cut(s) 27, 452, 1755
BmrFI CCNGG 8 cut(s) 277, 439, 1417, 1776, 1828, 1915, 1916, 2258
BmsI GCATC 8 cut(s) 208, 566, 608, 1069, 1089, 1293, 1646, 1840
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 2 cut(s) 633, 2186
Bpu10I CCTNAGC 1 cut(s) 729
Bpu1102I GCTNAGC 2 cut(s) 222, 1515
BpuEI CTTGAG 2 cut(s) 1901, 2084
BpuMI CCSGG 4 cut(s) 1417, 1828, 1915, 1916
BsaHI GRCGYC 1 cut(s) 1996
BsaJI CCNNGG 9 cut(s) 437, 438, 1035, 1083, 1202, 1264, 1914, 1999, 2256
BsaXI ACNNNNNCTCC 2 cut(s) 1015, 1045
Bsc4I CCNNNNNNNGG 5 cut(s) 850, 1316, 1466, 1827, 2153
Bse118I RCCGGY 2 cut(s) 58, 1433
Bse1I ACTGG 6 cut(s) 196, 400, 1537, 1563, 1951, 2203
Bse3DI GCAATG 2 cut(s) 312, 1398
BseBI CCWGG 4 cut(s) 277, 439, 1776, 2258
BseDI CCNNGG 9 cut(s) 437, 438, 1035, 1083, 1202, 1264, 1914, 1999, 2256
BseGI GGATG 4 cut(s) 940, 1817, 1831, 2143
BseLI CCNNNNNNNGG 5 cut(s) 850, 1316, 1466, 1827, 2153
BseMI GCAATG 2 cut(s) 312, 1398
BseMII CTCAG 7 cut(s) 189, 519, 720, 1467, 1529, 1854, 1959
BseNI ACTGG 6 cut(s) 196, 400, 1537, 1563, 1951, 2203
BseRI GAGGAG 3 cut(s) 111, 288, 1898
BseSI GKGCMC 1 cut(s) 1703
BseX3I CGGCCG 1 cut(s) 60
BseYI CCCAGC 2 cut(s) 1322, 2153
BsgI GTGCAG 2 cut(s) 1914, 2133
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 4 cut(s) 62, 195, 231, 423
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 2218
BsiHKCI CYCGRG 2 cut(s) 123, 1914
BsiSI CCGG 6 cut(s) 59, 783, 1416, 1434, 1828, 1915
BslFI GGGAC 2 cut(s) 39, 1897
BslI CCNNNNNNNGG 5 cut(s) 850, 1316, 1466, 1827, 2153
BsmAI GTCTC 2 cut(s) 651, 1082
BsmBI CGTCTC 1 cut(s) 651
BsmFI GGGAC 2 cut(s) 39, 1897
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 4 cut(s) 62, 195, 231, 423
BsoBI CYCGRG 2 cut(s) 123, 1914
Bsp1286I GDGCHC 2 cut(s) 1703, 2218
Bsp143I GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
Bsp1720I GCTNAGC 2 cut(s) 222, 1515
Bsp19I CCATGG 3 cut(s) 1035, 1083, 1999
BspACI CCGC 3 cut(s) 486, 1184, 1660
BspANI GGCC 4 cut(s) 62, 195, 231, 423
BspCNI CTCAG 7 cut(s) 190, 520, 721, 1466, 1528, 1853, 1960
BspHI TCATGA 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 27, 452, 1755
BspMAI CTGCAG 2 cut(s) 80, 1579
BspPI GGATC 4 cut(s) 501, 522, 547, 1229
BsrDI GCAATG 2 cut(s) 312, 1398
BsrFI RCCGGY 2 cut(s) 58, 1433
BsrI ACTGG 6 cut(s) 196, 400, 1537, 1563, 1951, 2203
BssAI RCCGGY 2 cut(s) 58, 1433
BssECI CCNNGG 9 cut(s) 437, 438, 1035, 1083, 1202, 1264, 1914, 1999, 2256
BssMI GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
BssNI GRCGYC 1 cut(s) 1996
BssT1I CCWWGG 4 cut(s) 1035, 1083, 1264, 1999
Bst2UI CCWGG 4 cut(s) 277, 439, 1776, 2258
Bst4CI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1594, 2044, 2059, 2222
Bst6I CTCTTC 3 cut(s) 190, 754, 2013
BstACI GRCGYC 1 cut(s) 1996
BstC8I GCNNGC 5 cut(s) 60, 1104, 1121, 1747, 2137
BstDSI CCRYGG 3 cut(s) 1035, 1083, 1999
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 4 cut(s) 940, 1817, 1831, 2143
BstH2I RGCGCY 1 cut(s) 1434
BstHHI GCGC 1 cut(s) 1433
BstKTI GATC 8 cut(s) 13, 46, 308, 496, 517, 542, 742, 1237
BstMAI GTCTC 2 cut(s) 651, 1082
BstMBI GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 7 cut(s) 201, 563, 572, 1568, 1571, 1742, 1925
BstNI CCWGG 4 cut(s) 277, 439, 1776, 2258
BstNSI RCATGY 4 cut(s) 944, 961, 1376, 1749
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 8 cut(s) 275, 437, 1415, 1774, 1826, 1913, 1914, 2256
BstSFI CTRYAG 6 cut(s) 76, 903, 1107, 1566, 1575, 2071
BstSLI GKGCMC 1 cut(s) 1703
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 514, 1234
BstXI CCANNNNNNTGG 2 cut(s) 1245, 1349
BstYI RGATCY 2 cut(s) 514, 1234
BstZI CGGCCG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1423
BsuRI GGCC 4 cut(s) 62, 195, 231, 423
BtgI CCRYGG 3 cut(s) 1035, 1083, 1999
BtrI CACGTC 2 cut(s) 1911, 1965
BtsCI GGATG 4 cut(s) 940, 1817, 1831, 2143
BtsI GCAGTG 4 cut(s) 73, 693, 723, 1696
Cac8I GCNNGC 5 cut(s) 60, 1104, 1121, 1747, 2137
CaiI CAGNNNCTG 3 cut(s) 282, 1466, 1574
CciI TCATGA 1 cut(s) 496
CfoI GCGC 1 cut(s) 1433
Cfr10I RCCGGY 2 cut(s) 58, 1433
Cfr13I GGNCC 3 cut(s) 26, 194, 947
Cfr9I CCCGGG 1 cut(s) 1914
CseI GACGC 1 cut(s) 2004
Csp6I GTAC 5 cut(s) 280, 293, 1457, 2045, 2102
CviQI GTAC 5 cut(s) 280, 293, 1457, 2045, 2102
DpnI GATC 8 cut(s) 12, 45, 307, 495, 516, 541, 741, 1236
DpnII GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
DraIII CACNNNGTG 3 cut(s) 362, 373, 613
EaeI YGGCCR 2 cut(s) 60, 421
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 3 cut(s) 190, 754, 2013
EarI CTCTTC 3 cut(s) 190, 754, 2013
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 4 cut(s) 1035, 1083, 1264, 1999
Eco47I GGWCC 2 cut(s) 26, 947
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 735, 1320
Eco88I CYCGRG 2 cut(s) 123, 1914
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 4 cut(s) 275, 437, 1774, 2256
EcoT14I CCWWGG 4 cut(s) 1035, 1083, 1264, 1999
EcoT22I ATGCAT 1 cut(s) 1751
ErhI CCWWGG 4 cut(s) 1035, 1083, 1264, 1999
Esp3I CGTCTC 1 cut(s) 651
FalI AAGNNNNNCTT 2 cut(s) 2175, 2207
FaqI GGGAC 2 cut(s) 39, 1897
FauNDI CATATG 1 cut(s) 870
FblI GTMKAC 2 cut(s) 1993, 2070
FokI GGATG 4 cut(s) 947, 1804, 1818, 2130
FspBI CTAG 5 cut(s) 141, 480, 590, 834, 2109
GlaI GCGC 1 cut(s) 1432
GsaI CCCAGC 2 cut(s) 1326, 2157
GsuI CTGGAG 2 cut(s) 633, 2186
HaeII RGCGCY 1 cut(s) 1434
HaeIII GGCC 4 cut(s) 62, 195, 231, 423
HapII CCGG 6 cut(s) 59, 783, 1416, 1434, 1828, 1915
HgaI GACGC 1 cut(s) 2004
HhaI GCGC 1 cut(s) 1433
Hin1I GRCGYC 1 cut(s) 1996
Hin6I GCGC 1 cut(s) 1431
HinP1I GCGC 1 cut(s) 1431
HincII GTYRAC 2 cut(s) 1275, 1994
HindII GTYRAC 2 cut(s) 1275, 1994
HindIII AAGCTT 1 cut(s) 2189
HpaI GTTAAC 1 cut(s) 1275
HpaII CCGG 6 cut(s) 59, 783, 1416, 1434, 1828, 1915
HphI GGTGA 6 cut(s) 62, 374, 457, 689, 888, 1950
Hpy166II GTNNAC 4 cut(s) 839, 1275, 1994, 2071
Hpy188III TCNNGA 9 cut(s) 332, 497, 603, 650, 743, 1757, 1799, 1806, 2063
Hpy8I GTNNAC 4 cut(s) 839, 1275, 1994, 2071
Hpy99I CGWCG 1 cut(s) 1998
HpyAV CCTTC 7 cut(s) 39, 242, 393, 468, 810, 1641, 2177
HpyCH4III ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1594, 2044, 2059, 2222
HpyCH4IV ACGT 4 cut(s) 825, 979, 1910, 1964
HpyF10VI GCNNNNNNNGC 7 cut(s) 201, 563, 572, 1568, 1571, 1742, 1925
HpySE526I ACGT 4 cut(s) 825, 979, 1910, 1964
Hsp92I GRCGYC 1 cut(s) 1996
HspAI GCGC 1 cut(s) 1431
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 1275
Kzo9I GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
LmnI GCTCC 3 cut(s) 715, 1249, 1642
LweI GCATC 8 cut(s) 208, 566, 608, 1069, 1089, 1293, 1646, 1840
MaeI CTAG 5 cut(s) 141, 480, 590, 834, 2109
MaeII ACGT 4 cut(s) 825, 979, 1910, 1964
MaeIII GTNAC 7 cut(s) 68, 255, 362, 894, 964, 1581, 1611
MalI GATC 8 cut(s) 12, 45, 307, 495, 516, 541, 741, 1236
MboI GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 2 cut(s) 514, 1234
MhlI GDGCHC 2 cut(s) 1703, 2218
MlsI TGGCCA 1 cut(s) 423
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 4 cut(s) 76, 263, 740, 2205
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 1751
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 1173
MscI TGGCCA 1 cut(s) 423
MseI TTAA 9 cut(s) 407, 1155, 1274, 1314, 1487, 1664, 1979, 2013, 2127
MslI CAYNNNNRTG 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 1574
MspI CCGG 6 cut(s) 59, 783, 1416, 1434, 1828, 1915
MspR9I CCNGG 8 cut(s) 277, 439, 1417, 1776, 1828, 1915, 1916, 2258
MunI CAATTG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 4 cut(s) 277, 439, 1776, 2258
MwoI GCNNNNNNNGC 7 cut(s) 201, 563, 572, 1568, 1571, 1742, 1925
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 4 cut(s) 1417, 1828, 1915, 1916
NcoI CCATGG 3 cut(s) 1035, 1083, 1999
NdeI CATATG 1 cut(s) 870
NdeII GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
NgoMIV GCCGGC 1 cut(s) 58
NlaIV GGNNCC 3 cut(s) 27, 452, 1755
NmeAIII GCCGAG 2 cut(s) 88, 1183
NmuCI GTSAC 6 cut(s) 68, 255, 362, 894, 964, 1611
NsiI ATGCAT 1 cut(s) 1751
NspI RCATGY 4 cut(s) 944, 961, 1376, 1749
PaeI GCATGC 1 cut(s) 1749
PaeR7I CTCGAG 1 cut(s) 123
PagI TCATGA 1 cut(s) 496
PasI CCCWGGG 1 cut(s) 438
PciI ACATGT 1 cut(s) 1372
PcsI WCGNNNNNNNCGW 1 cut(s) 1210
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1173
PfeI GAWTC 8 cut(s) 179, 755, 1145, 1180, 1463, 1533, 1725, 1802
PflMI CCANNNNNTGG 1 cut(s) 1466
PfoI TCCNGGA 1 cut(s) 1415
PleI GAGTC 4 cut(s) 75, 262, 740, 2204
PpsI GAGTC 4 cut(s) 75, 262, 740, 2204
PpuMI RGGWCCY 1 cut(s) 26
PscI ACATGT 1 cut(s) 1372
PshBI ATTAAT 2 cut(s) 1155, 1979
Psp1406I AACGTT 1 cut(s) 825
Psp5II RGGWCCY 1 cut(s) 26
Psp6I CCWGG 4 cut(s) 275, 437, 1774, 2256
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 1322, 2153
PspGI CCWGG 4 cut(s) 275, 437, 1774, 2256
PspN4I GGNNCC 3 cut(s) 27, 452, 1755
PspPI GGNCC 3 cut(s) 26, 194, 947
PspPPI RGGWCCY 1 cut(s) 26
PspXI VCTCGAGB 1 cut(s) 123
PsrI GAACNNNNNNTAC 2 cut(s) 1764, 1796
PstI CTGCAG 2 cut(s) 80, 1579
PstNI CAGNNNCTG 3 cut(s) 282, 1466, 1574
PsuI RGATCY 2 cut(s) 514, 1234
PvuII CAGCTG 1 cut(s) 1574
RsaI GTAC 5 cut(s) 281, 294, 1458, 2046, 2103
RsaNI GTAC 5 cut(s) 280, 293, 1457, 2045, 2102
RseI CAYNNNNRTG 1 cut(s) 834
SalI GTCGAC 1 cut(s) 1992
SaqAI TTAA 9 cut(s) 407, 1155, 1274, 1314, 1487, 1664, 1979, 2013, 2127
Sau3AI GATC 8 cut(s) 10, 43, 305, 493, 514, 539, 739, 1234
Sau96I GGNCC 3 cut(s) 26, 194, 947
ScaI AGTACT 1 cut(s) 2103
SchI GAGTC 4 cut(s) 76, 263, 740, 2205
ScrFI CCNGG 8 cut(s) 277, 439, 1417, 1776, 1828, 1915, 1916, 2258
SduI GDGCHC 2 cut(s) 1703, 2218
SfaNI GCATC 8 cut(s) 208, 566, 608, 1069, 1089, 1293, 1646, 1840
SfcI CTRYAG 6 cut(s) 76, 903, 1107, 1566, 1575, 2071
Sfr274I CTCGAG 1 cut(s) 123
SinI GGWCC 2 cut(s) 26, 947
SlaI CTCGAG 1 cut(s) 123
SmaI CCCGGG 1 cut(s) 1916
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 3 cut(s) 123, 1880, 2063
SmoI CTYRAG 3 cut(s) 123, 1880, 2063
SphI GCATGC 1 cut(s) 1749
SsiI CCGC 3 cut(s) 486, 1184, 1660
SspI AATATT 1 cut(s) 1174
SspMI CTAG 5 cut(s) 141, 480, 590, 834, 2109
StyD4I CCNGG 8 cut(s) 275, 437, 1415, 1774, 1826, 1913, 1914, 2256
StyI CCWWGG 4 cut(s) 1035, 1083, 1264, 1999
TaaI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1594, 2044, 2059, 2222
TaiI ACGT 4 cut(s) 828, 982, 1913, 1967
TaqI TCGA 4 cut(s) 124, 547, 1301, 1993
TatI WGTACW 1 cut(s) 2101
TauI GCSGC 1 cut(s) 1662
TfiI GAWTC 8 cut(s) 179, 755, 1145, 1180, 1463, 1533, 1725, 1802
Tru1I TTAA 9 cut(s) 407, 1155, 1274, 1314, 1487, 1664, 1979, 2013, 2127
Tru9I TTAA 9 cut(s) 407, 1155, 1274, 1314, 1487, 1664, 1979, 2013, 2127
TseFI GTSAC 6 cut(s) 68, 255, 362, 894, 964, 1611
Tsp45I GTSAC 6 cut(s) 68, 255, 362, 894, 964, 1611
TspGWI ACGGA 1 cut(s) 2136
TspMI CCCGGG 1 cut(s) 1914
Van91I CCANNNNNTGG 1 cut(s) 1466
VpaK11BI GGWCC 2 cut(s) 26, 947
VspI ATTAAT 2 cut(s) 1155, 1979
XapI RAATTY 2 cut(s) 114, 159
XceI RCATGY 4 cut(s) 944, 961, 1376, 1749
XcmI CCANNNNNNNNNTGG 1 cut(s) 1802
XhoI CTCGAG 1 cut(s) 123
XmaI CCCGGG 1 cut(s) 1914
XmiI GTMKAC 2 cut(s) 1993, 2070
XmnI GAANNNNTTC 1 cut(s) 1173
XspI CTAG 5 cut(s) 141, 480, 590, 834, 2109
ZrmI AGTACT 1 cut(s) 2103
Zsp2I ATGCAT 1 cut(s) 1751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.