Rmu_co8311601.1_g000001

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8311601.1
OG0001434
Physical Location & Seq
Forward (+)
1 .. 871
871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8311601.1_g000001.1.cds

Sequence Viewer

Length: 391 bp
cagaaatgtggtcggcttgatagtaaggagagaaatttctcctcgagcaaagcacttgcctagaagacggtggggagaaattcctaaagtgaaagctgattcctcttccactggccctgagtgccaagcaacaatagatgctaagcgtggccttctttcatgggttgaagcagagtcactacggcatttgtcagccaggtactgtaatttagtacctcctccaaggtcaaccattgcagcagcatttagtcccgatggaagaactgttgcttctacacatggtgaccacactgtgaagataattgattgccaaactggaaggtgcttaaaggttttgagtggccataggaggaccccctgggtgcaatactatttgcaacttgttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

129

Amino Acids

14.45

Weight (kDa)

10.28

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 341
AcsI RAATTY 2 cut(s) 34, 79
AdeI CACNNNGTG 2 cut(s) 282, 293
AfaI GTAC 2 cut(s) 201, 214
AgsI TTSAA 2 cut(s) 168, 387
AjnI CCWGG 2 cut(s) 195, 357
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 3 cut(s) 113, 149, 341
ApeKI GCWGC 2 cut(s) 237, 240
ApoI RAATTY 2 cut(s) 34, 79
AspS9I GGNCC 2 cut(s) 114, 352
AsuHPI GGTGA 1 cut(s) 294
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 352
BalI TGGCCA 1 cut(s) 343
BbsI GAAGAC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 249, 252
BccI CCATC 1 cut(s) 249
BceAI ACGGC 1 cut(s) 198
BciT130I CCWGG 2 cut(s) 197, 359
BfaI CTAG 1 cut(s) 61
BisI GCNGC 2 cut(s) 238, 241
BlpI GCTNAGC 1 cut(s) 142
BlsI GCNGC 2 cut(s) 239, 242
Bme1390I CCNGG 2 cut(s) 197, 359
Bme18I GGWCC 1 cut(s) 352
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 2 cut(s) 114, 352
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 2 cut(s) 197, 359
BmsI GCATC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 71
Bpu1102I GCTNAGC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 222, 357, 358
Bse1I ACTGG 2 cut(s) 116, 320
Bse3DI GCAATG 1 cut(s) 232
BseBI CCWGG 2 cut(s) 197, 359
BseDI CCNNGG 3 cut(s) 222, 357, 358
BseMI GCAATG 1 cut(s) 232
BseMII CTCAG 1 cut(s) 109
BseNI ACTGG 2 cut(s) 116, 320
BseRI GAGGAG 2 cut(s) 31, 208
BseXI GCAGC 2 cut(s) 249, 252
BshFI GGCC 3 cut(s) 115, 151, 343
BsiHKCI CYCGRG 1 cut(s) 43
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 3 cut(s) 115, 151, 343
BsoBI CYCGRG 1 cut(s) 43
Bsp1720I GCTNAGC 1 cut(s) 142
BspANI GGCC 3 cut(s) 115, 151, 343
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 232
BsrI ACTGG 2 cut(s) 116, 320
BssECI CCNNGG 3 cut(s) 222, 357, 358
BssT1I CCWWGG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 197, 359
Bst4CI ACNGT 4 cut(s) 70, 204, 266, 293
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 118, 142
BstEII GGTNACC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstNI CCWGG 2 cut(s) 197, 359
BstPI GGTNACC 1 cut(s) 282
BstSCI CCNGG 2 cut(s) 195, 357
BstV1I GCAGC 2 cut(s) 249, 252
BstV2I GAAGAC 1 cut(s) 71
BsuRI GGCC 3 cut(s) 115, 151, 343
BtsIMutI CAGTG 2 cut(s) 109, 289
CaiI CAGNNNCTG 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 114, 352
Csp6I GTAC 2 cut(s) 200, 213
CviAII CATG 2 cut(s) 160, 279
CviJI RGCY 6 cut(s) 16, 96, 115, 151, 195, 343
CviKI_1 RGCY 6 cut(s) 16, 96, 115, 151, 195, 343
CviQI GTAC 2 cut(s) 200, 213
DdeI CTNAG 2 cut(s) 118, 142
DraIII CACNNNGTG 2 cut(s) 282, 293
EaeI YGGCCR 1 cut(s) 341
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 352
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 352
EcoO65I GGTNACC 1 cut(s) 282
EcoRII CCWGG 2 cut(s) 195, 357
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 2 cut(s) 163, 282
FaiI YATR 3 cut(s) 161, 280, 346
FaqI GGGAC 1 cut(s) 235
FatI CATG 2 cut(s) 159, 278
Fnu4HI GCNGC 2 cut(s) 238, 241
Fsp4HI GCNGC 2 cut(s) 238, 241
FspBI CTAG 1 cut(s) 61
GluI GCNGC 2 cut(s) 238, 241
HaeIII GGCC 3 cut(s) 115, 151, 343
Hin1II CATG 2 cut(s) 163, 282
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 99, 174
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 162, 313
HpyCH4III ACNGT 4 cut(s) 70, 204, 266, 293
HpyCH4V TGCA 3 cut(s) 237, 365, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 118, 142
Hsp92II CATG 2 cut(s) 163, 282
LpnPI CCDG 7 cut(s) 97, 130, 182, 209, 301, 344, 371
Lsp1109I GCAGC 2 cut(s) 249, 252
LweI GCATC 1 cut(s) 128
MaeI CTAG 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 175, 282
MboII GAAGA 4 cut(s) 76, 97, 271, 308
MlsI TGGCCA 1 cut(s) 343
MluCI AATT 4 cut(s) 34, 79, 206, 301
MluNI TGGCCA 1 cut(s) 343
MlyI GAGTC 1 cut(s) 183
MnlI CCTC 5 cut(s) 52, 113, 226, 229, 343
Mox20I TGGCCA 1 cut(s) 343
MscI TGGCCA 1 cut(s) 343
MseI TTAA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 197, 359
MvaI CCWGG 2 cut(s) 197, 359
MwoI GCNNNNNNNGC 1 cut(s) 121
NlaIII CATG 2 cut(s) 163, 282
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 2 cut(s) 175, 282
PaeR7I CTCGAG 1 cut(s) 43
PasI CCCWGGG 1 cut(s) 358
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 239, 242
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
Psp6I CCWGG 2 cut(s) 195, 357
PspEI GGTNACC 1 cut(s) 282
PspGI CCWGG 2 cut(s) 195, 357
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 114, 352
PspPPI RGGWCCY 1 cut(s) 352
PspXI VCTCGAGB 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 202
RsaI GTAC 2 cut(s) 201, 214
RsaNI GTAC 2 cut(s) 200, 213
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 2 cut(s) 238, 241
Sau96I GGNCC 2 cut(s) 114, 352
SchI GAGTC 1 cut(s) 183
ScrFI CCNGG 2 cut(s) 197, 359
SetI ASST 6 cut(s) 98, 201, 218, 228, 324, 334
SfaNI GCATC 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 352
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
Sse9I AATT 4 cut(s) 34, 79, 206, 301
SspMI CTAG 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 195, 357
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 4 cut(s) 70, 204, 266, 293
TaqI TCGA 1 cut(s) 44
TasI AATT 4 cut(s) 34, 79, 206, 301
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 116, 296
TseFI GTSAC 2 cut(s) 175, 282
TseI GCWGC 2 cut(s) 237, 240
Tsp45I GTSAC 2 cut(s) 175, 282
TspDTI ATGAA 1 cut(s) 148
TspRI CASTG 2 cut(s) 116, 296
VpaK11BI GGWCC 1 cut(s) 352
XapI RAATTY 2 cut(s) 34, 79
XhoI CTCGAG 1 cut(s) 43
XspI CTAG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.