RchiOBHm_Chr6g0285981

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001434
Physical Location & Seq
Forward (+)
49241591 .. 49249284
7694 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25653

Sequence Viewer

Length: 2271 bp
ATGAAGTCCGATCTTATGATGACGGGGCCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAAAGTCACCACTGCAGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTGGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCTGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGATTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAATGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACATGAAGCAGTTGCAAATGCAACAGAGCGGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAATGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTTGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGCACCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCAGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAGTCTGGGGATGGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGACGCTGAACCTGGATTACAAAGTGTAGTCCTTCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTCACGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCACATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGTGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

756

Amino Acids

82.44

Weight (kDa)

6.38

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 106 - 216 1.4e-09 WDR55
Beta-prop_THOC3 PF25174 107 - 245 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 107 - 219 3.3e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 107 - 213 8.5e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 108 - 249 9.4e-22 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 108 - 222 5.9e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 108 - 212 6.9e-11 WDHD1 first WD40 domain
EIF3I PF24805 108 - 204 8.8e-06 EIF3I
WD40_Prp19 PF24814 109 - 238 1.5e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 110 - 217 2.3e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 113 - 204 2e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 147 - 237 1.2e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 292
AccB1I GGYRCC 1 cut(s) 292
AccB7I CCANNNNNTGG 1 cut(s) 1472
AccBSI CCGCTC 1 cut(s) 1015
AccI GTMKAC 2 cut(s) 1999, 2076
AciI CCGC 4 cut(s) 486, 1015, 1666, 1740
AclI AACGTT 1 cut(s) 834
AclWI GGATC 5 cut(s) 501, 522, 547, 1232, 1948
AcoI YGGCCR 2 cut(s) 60, 421
AcsI RAATTY 2 cut(s) 114, 159
AcuI CTGAAG 2 cut(s) 744, 1326
AcvI CACGTG 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 2002
AdeI CACNNNGTG 3 cut(s) 362, 373, 622
AfaI GTAC 5 cut(s) 281, 294, 1464, 2052, 2109
AfeI AGCGCT 1 cut(s) 1438
AfiI CCNNNNNNNGG 5 cut(s) 859, 1322, 1472, 1833, 2159
AflIII ACRYGT 1 cut(s) 1378
AgsI TTSAA 4 cut(s) 248, 673, 1805, 1908
AjiI CACGTC 2 cut(s) 1917, 1971
AjnI CCWGG 5 cut(s) 275, 437, 1421, 1780, 2262
AjuI GAANNNNNNNTTGG 4 cut(s) 1284, 1316, 1884, 1916
Alw21I GWGCWC 2 cut(s) 1980, 2224
Alw26I GTCTC 2 cut(s) 660, 1085
AlwI GGATC 5 cut(s) 501, 522, 547, 1232, 1948
AlwNI CAGNNNCTG 3 cut(s) 282, 1472, 1580
Ama87I CYCGRG 3 cut(s) 123, 1886, 1920
Aor51HI AGCGCT 1 cut(s) 1438
AoxI GGCC 5 cut(s) 26, 60, 193, 229, 421
ApoI RAATTY 2 cut(s) 114, 159
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AseI ATTAAT 2 cut(s) 1158, 1985
Asp700I GAANNNNTTC 1 cut(s) 1176
Asp718I GGTACC 1 cut(s) 292
AspLEI GCGC 1 cut(s) 1439
AspS9I GGNCC 3 cut(s) 26, 194, 956
AsuC2I CCSGG 3 cut(s) 1834, 1921, 1922
AsuHPI GGTGA 6 cut(s) 62, 374, 457, 698, 897, 1956
AvaI CYCGRG 3 cut(s) 123, 1886, 1920
AvaII GGWCC 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 1709
BaeI ACNNNNGTAYC 4 cut(s) 1401, 1434, 2034, 2067
BalI TGGCCA 1 cut(s) 423
BanI GGYRCC 1 cut(s) 292
BbrPI CACGTG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 1980, 2224
BbvCI CCTCAGC 1 cut(s) 738
BccI CCATC 8 cut(s) 329, 561, 916, 938, 1060, 1472, 1502, 2030
BceAI ACGGC 1 cut(s) 278
BciT130I CCWGG 5 cut(s) 277, 439, 1423, 1782, 2264
BciVI GTATCC 1 cut(s) 1429
BcnI CCSGG 3 cut(s) 1834, 1921, 1922
BcoDI GTCTC 2 cut(s) 660, 1085
BfaI CTAG 4 cut(s) 141, 480, 599, 2115
BfmI CTRYAG 6 cut(s) 76, 912, 1110, 1572, 1581, 2077
BfoI RGCGCY 1 cut(s) 1440
BfuI GTATCC 1 cut(s) 1429
BlpI GCTNAGC 2 cut(s) 222, 1521
BmcAI AGTACT 1 cut(s) 2109
Bme1390I CCNGG 8 cut(s) 277, 439, 1423, 1782, 1834, 1921, 1922, 2264
Bme18I GGWCC 1 cut(s) 956
BmeT110I CYCGRG 3 cut(s) 123, 1886, 1920
BmgBI CACGTC 2 cut(s) 1917, 1971
BmgT120I GGNCC 3 cut(s) 26, 194, 956
BmiI GGNNCC 3 cut(s) 27, 294, 1761
BmrFI CCNGG 8 cut(s) 277, 439, 1423, 1782, 1834, 1921, 1922, 2264
BmsI GCATC 8 cut(s) 208, 575, 617, 1072, 1092, 1299, 1652, 1846
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 2 cut(s) 642, 2192
Bpu10I CCTNAGC 1 cut(s) 738
Bpu1102I GCTNAGC 2 cut(s) 222, 1521
BpuEI CTTGAG 1 cut(s) 2090
BpuMI CCSGG 3 cut(s) 1834, 1921, 1922
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 2002
BsaXI ACNNNNNCTCC 2 cut(s) 1018, 1048
Bsc4I CCNNNNNNNGG 5 cut(s) 859, 1322, 1472, 1833, 2159
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 6 cut(s) 196, 400, 1543, 1569, 1957, 2209
Bse3DI GCAATG 2 cut(s) 312, 1404
Bse8I GATNNNNATC 1 cut(s) 552
BseBI CCWGG 5 cut(s) 277, 439, 1423, 1782, 2264
BseGI GGATG 6 cut(s) 566, 949, 1483, 1823, 1837, 2149
BseJI GATNNNNATC 1 cut(s) 552
BseLI CCNNNNNNNGG 5 cut(s) 859, 1322, 1472, 1833, 2159
BseMI GCAATG 2 cut(s) 312, 1404
BseMII CTCAG 7 cut(s) 189, 519, 729, 1473, 1535, 1860, 1965
BseNI ACTGG 6 cut(s) 196, 400, 1543, 1569, 1957, 2209
BseRI GAGGAG 2 cut(s) 111, 288
BseSI GKGCMC 1 cut(s) 1709
BseX3I CGGCCG 1 cut(s) 60
BseYI CCCAGC 2 cut(s) 1328, 2159
BsgI GTGCAG 2 cut(s) 1920, 2139
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 28, 62, 195, 231, 423
BshNI GGYRCC 1 cut(s) 292
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 2 cut(s) 1980, 2224
BsiHKCI CYCGRG 3 cut(s) 123, 1886, 1920
BsiSI CCGG 4 cut(s) 59, 792, 1834, 1921
BslFI GGGAC 1 cut(s) 1903
BslI CCNNNNNNNGG 5 cut(s) 859, 1322, 1472, 1833, 2159
BsmAI GTCTC 2 cut(s) 660, 1085
BsmBI CGTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 1903
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 5 cut(s) 28, 62, 195, 231, 423
BsoBI CYCGRG 3 cut(s) 123, 1886, 1920
Bsp1286I GDGCHC 3 cut(s) 1709, 1980, 2224
Bsp143I GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
Bsp1720I GCTNAGC 2 cut(s) 222, 1521
Bsp19I CCATGG 4 cut(s) 570, 1038, 1086, 2005
BspACI CCGC 4 cut(s) 486, 1015, 1666, 1740
BspANI GGCC 5 cut(s) 28, 62, 195, 231, 423
BspCNI CTCAG 7 cut(s) 190, 520, 730, 1472, 1534, 1859, 1966
BspLI GGNNCC 3 cut(s) 27, 294, 1761
BspMAI CTGCAG 2 cut(s) 80, 1585
BspPI GGATC 5 cut(s) 501, 522, 547, 1232, 1948
BspT107I GGYRCC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 1015
BsrDI GCAATG 2 cut(s) 312, 1404
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 6 cut(s) 196, 400, 1543, 1569, 1957, 2209
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
BssNI GRCGYC 1 cut(s) 2002
BssT1I CCWWGG 7 cut(s) 302, 570, 1038, 1086, 1205, 1267, 2005
Bst2UI CCWGG 5 cut(s) 277, 439, 1423, 1782, 2264
Bst4CI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1600, 2050, 2065, 2228
Bst6I CTCTTC 4 cut(s) 190, 763, 1194, 2019
BstACI GRCGYC 1 cut(s) 2002
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 5 cut(s) 60, 1107, 1124, 1753, 2143
BstDSI CCRYGG 4 cut(s) 570, 1038, 1086, 2005
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 6 cut(s) 566, 949, 1483, 1823, 1837, 2149
BstH2I RGCGCY 1 cut(s) 1440
BstHHI GCGC 1 cut(s) 1439
BstKTI GATC 8 cut(s) 13, 46, 496, 517, 542, 751, 1240, 1956
BstMAI GTCTC 2 cut(s) 660, 1085
BstMBI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 7 cut(s) 201, 572, 581, 1574, 1577, 1748, 1931
BstNI CCWGG 5 cut(s) 277, 439, 1423, 1782, 2264
BstNSI RCATGY 4 cut(s) 953, 970, 1382, 1755
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 8 cut(s) 275, 437, 1421, 1780, 1832, 1919, 1920, 2262
BstSFI CTRYAG 6 cut(s) 76, 912, 1110, 1572, 1581, 2077
BstSLI GKGCMC 1 cut(s) 1709
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 514, 1237
BstXI CCANNNNNNTGG 2 cut(s) 1248, 1355
BstYI RGATCY 2 cut(s) 514, 1237
BstZI CGGCCG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1429
BsuRI GGCC 5 cut(s) 28, 62, 195, 231, 423
BtgI CCRYGG 4 cut(s) 570, 1038, 1086, 2005
BtrI CACGTC 2 cut(s) 1917, 1971
BtsCI GGATG 6 cut(s) 566, 949, 1483, 1823, 1837, 2149
BtsI GCAGTG 3 cut(s) 73, 702, 1702
BtsIMutI CAGTG 9 cut(s) 73, 189, 369, 702, 1562, 1596, 1702, 2061, 2233
Cac8I GCNNGC 5 cut(s) 60, 1107, 1124, 1753, 2143
CaiI CAGNNNCTG 3 cut(s) 282, 1472, 1580
CfoI GCGC 1 cut(s) 1439
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 26, 194, 956
Cfr9I CCCGGG 1 cut(s) 1920
CseI GACGC 2 cut(s) 1781, 2010
Csp6I GTAC 5 cut(s) 280, 293, 1463, 2051, 2108
CviQI GTAC 5 cut(s) 280, 293, 1463, 2051, 2108
DpnI GATC 8 cut(s) 12, 45, 495, 516, 541, 750, 1239, 1955
DpnII GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
DraIII CACNNNGTG 3 cut(s) 362, 373, 622
EaeI YGGCCR 2 cut(s) 60, 421
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 190, 763, 1194, 2019
EarI CTCTTC 4 cut(s) 190, 763, 1194, 2019
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 7 cut(s) 302, 570, 1038, 1086, 1205, 1267, 2005
Eco47I GGWCC 1 cut(s) 956
Eco47III AGCGCT 1 cut(s) 1438
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 744, 1326
Eco72I CACGTG 1 cut(s) 545
Eco88I CYCGRG 3 cut(s) 123, 1886, 1920
Eco91I GGTNACC 1 cut(s) 362
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 5 cut(s) 275, 437, 1421, 1780, 2262
EcoT14I CCWWGG 7 cut(s) 302, 570, 1038, 1086, 1205, 1267, 2005
EcoT22I ATGCAT 1 cut(s) 1757
ErhI CCWWGG 7 cut(s) 302, 570, 1038, 1086, 1205, 1267, 2005
Esp3I CGTCTC 1 cut(s) 660
FalI AAGNNNNNCTT 2 cut(s) 2181, 2213
FaqI GGGAC 1 cut(s) 1903
FauNDI CATATG 1 cut(s) 879
FblI GTMKAC 2 cut(s) 1999, 2076
FokI GGATG 6 cut(s) 553, 956, 1490, 1810, 1824, 2136
FspBI CTAG 4 cut(s) 141, 480, 599, 2115
GlaI GCGC 1 cut(s) 1438
GsaI CCCAGC 2 cut(s) 1332, 2163
GsuI CTGGAG 2 cut(s) 642, 2192
HaeII RGCGCY 1 cut(s) 1440
HaeIII GGCC 5 cut(s) 28, 62, 195, 231, 423
HapII CCGG 4 cut(s) 59, 792, 1834, 1921
HgaI GACGC 2 cut(s) 1781, 2010
HhaI GCGC 1 cut(s) 1439
Hin1I GRCGYC 1 cut(s) 2002
Hin6I GCGC 1 cut(s) 1437
HinP1I GCGC 1 cut(s) 1437
HincII GTYRAC 3 cut(s) 309, 1278, 2000
HindII GTYRAC 3 cut(s) 309, 1278, 2000
HindIII AAGCTT 1 cut(s) 2195
HpaI GTTAAC 1 cut(s) 1278
HpaII CCGG 4 cut(s) 59, 792, 1834, 1921
HphI GGTGA 6 cut(s) 62, 374, 457, 698, 897, 1956
Hpy166II GTNNAC 5 cut(s) 309, 686, 1278, 2000, 2077
Hpy188III TCNNGA 9 cut(s) 332, 497, 612, 659, 752, 1763, 1805, 1812, 2069
Hpy8I GTNNAC 5 cut(s) 309, 686, 1278, 2000, 2077
Hpy99I CGWCG 1 cut(s) 2004
HpyAV CCTTC 8 cut(s) 39, 242, 393, 468, 819, 1647, 1811, 2183
HpyCH4III ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1600, 2050, 2065, 2228
HpyCH4IV ACGT 4 cut(s) 544, 834, 1916, 1970
HpyF10VI GCNNNNNNNGC 7 cut(s) 201, 572, 581, 1574, 1577, 1748, 1931
HpySE526I ACGT 4 cut(s) 544, 834, 1916, 1970
Hsp92I GRCGYC 1 cut(s) 2002
HspAI GCGC 1 cut(s) 1437
KpnI GGTACC 1 cut(s) 296
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 1278
Kzo9I GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
LmnI GCTCC 3 cut(s) 724, 1252, 1648
LweI GCATC 8 cut(s) 208, 575, 617, 1072, 1092, 1299, 1652, 1846
MaeI CTAG 4 cut(s) 141, 480, 599, 2115
MaeII ACGT 4 cut(s) 544, 834, 1916, 1970
MaeIII GTNAC 8 cut(s) 68, 255, 362, 903, 962, 973, 1587, 1617
MalI GATC 8 cut(s) 12, 45, 495, 516, 541, 750, 1239, 1955
MbiI CCGCTC 1 cut(s) 1015
MboI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
MflI RGATCY 2 cut(s) 514, 1237
MhlI GDGCHC 3 cut(s) 1709, 1980, 2224
MlsI TGGCCA 1 cut(s) 423
MluCI AATT 9 cut(s) 114, 159, 286, 381, 474, 1366, 1551, 1815, 1986
MluNI TGGCCA 1 cut(s) 423
MlyI GAGTC 4 cut(s) 263, 749, 1478, 2211
Mox20I TGGCCA 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 1757
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 1176
MscI TGGCCA 1 cut(s) 423
MseI TTAA 9 cut(s) 407, 1158, 1277, 1320, 1493, 1670, 1985, 2019, 2133
MslI CAYNNNNRTG 2 cut(s) 843, 1077
Msp20I TGGCCA 1 cut(s) 423
MspA1I CMGCKG 1 cut(s) 1580
MspI CCGG 4 cut(s) 59, 792, 1834, 1921
MspR9I CCNGG 8 cut(s) 277, 439, 1423, 1782, 1834, 1921, 1922, 2264
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 5 cut(s) 277, 439, 1423, 1782, 2264
MwoI GCNNNNNNNGC 7 cut(s) 201, 572, 581, 1574, 1577, 1748, 1931
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 3 cut(s) 1834, 1921, 1922
NcoI CCATGG 4 cut(s) 570, 1038, 1086, 2005
NdeI CATATG 1 cut(s) 879
NdeII GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
NgoMIV GCCGGC 1 cut(s) 58
NlaIV GGNNCC 3 cut(s) 27, 294, 1761
NmuCI GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1617
NsiI ATGCAT 1 cut(s) 1757
NspI RCATGY 4 cut(s) 953, 970, 1382, 1755
PaeI GCATGC 1 cut(s) 1755
PaeR7I CTCGAG 2 cut(s) 123, 1886
PasI CCCWGGG 1 cut(s) 438
PciI ACATGT 1 cut(s) 1378
PctI GAATGC 1 cut(s) 649
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1176
PfeI GAWTC 8 cut(s) 179, 450, 764, 1148, 1183, 1539, 1731, 1808
PflMI CCANNNNNTGG 1 cut(s) 1472
PleI GAGTC 4 cut(s) 262, 749, 1477, 2210
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
PpsI GAGTC 4 cut(s) 262, 749, 1477, 2210
Ppu21I YACGTR 1 cut(s) 545
PscI ACATGT 1 cut(s) 1378
PshBI ATTAAT 2 cut(s) 1158, 1985
Psp1406I AACGTT 1 cut(s) 834
Psp6I CCWGG 5 cut(s) 275, 437, 1421, 1780, 2262
PspCI CACGTG 1 cut(s) 545
PspEI GGTNACC 1 cut(s) 362
PspFI CCCAGC 2 cut(s) 1328, 2159
PspGI CCWGG 5 cut(s) 275, 437, 1421, 1780, 2262
PspN4I GGNNCC 3 cut(s) 27, 294, 1761
PspPI GGNCC 3 cut(s) 26, 194, 956
PspXI VCTCGAGB 2 cut(s) 123, 1886
PsrI GAACNNNNNNTAC 2 cut(s) 1770, 1802
PstI CTGCAG 2 cut(s) 80, 1585
PstNI CAGNNNCTG 3 cut(s) 282, 1472, 1580
PsuI RGATCY 2 cut(s) 514, 1237
PvuII CAGCTG 1 cut(s) 1580
RsaI GTAC 5 cut(s) 281, 294, 1464, 2052, 2109
RsaNI GTAC 5 cut(s) 280, 293, 1463, 2051, 2108
RseI CAYNNNNRTG 2 cut(s) 843, 1077
SalI GTCGAC 1 cut(s) 1998
SaqAI TTAA 9 cut(s) 407, 1158, 1277, 1320, 1493, 1670, 1985, 2019, 2133
Sau3AI GATC 8 cut(s) 10, 43, 493, 514, 539, 748, 1237, 1953
Sau96I GGNCC 3 cut(s) 26, 194, 956
ScaI AGTACT 1 cut(s) 2109
SchI GAGTC 4 cut(s) 263, 749, 1478, 2211
ScrFI CCNGG 8 cut(s) 277, 439, 1423, 1782, 1834, 1921, 1922, 2264
SduI GDGCHC 3 cut(s) 1709, 1980, 2224
SfaNI GCATC 8 cut(s) 208, 575, 617, 1072, 1092, 1299, 1652, 1846
SfcI CTRYAG 6 cut(s) 76, 912, 1110, 1572, 1581, 2077
Sfr274I CTCGAG 2 cut(s) 123, 1886
SinI GGWCC 1 cut(s) 956
SlaI CTCGAG 2 cut(s) 123, 1886
SmaI CCCGGG 1 cut(s) 1922
SmiMI CAYNNNNRTG 2 cut(s) 843, 1077
SmlI CTYRAG 3 cut(s) 123, 1886, 2069
SmoI CTYRAG 3 cut(s) 123, 1886, 2069
SphI GCATGC 1 cut(s) 1755
Sse9I AATT 9 cut(s) 114, 159, 286, 381, 474, 1366, 1551, 1815, 1986
SsiI CCGC 4 cut(s) 486, 1015, 1666, 1740
SspI AATATT 1 cut(s) 1177
SspMI CTAG 4 cut(s) 141, 480, 599, 2115
StyD4I CCNGG 8 cut(s) 275, 437, 1421, 1780, 1832, 1919, 1920, 2262
StyI CCWWGG 7 cut(s) 302, 570, 1038, 1086, 1205, 1267, 2005
TaaI ACNGT 9 cut(s) 39, 150, 284, 346, 373, 1600, 2050, 2065, 2228
TaiI ACGT 4 cut(s) 547, 837, 1919, 1973
TaqI TCGA 6 cut(s) 124, 556, 1307, 1887, 1952, 1999
TasI AATT 9 cut(s) 114, 159, 286, 381, 474, 1366, 1551, 1815, 1986
TatI WGTACW 1 cut(s) 2107
TauI GCSGC 2 cut(s) 1668, 1742
TfiI GAWTC 8 cut(s) 179, 450, 764, 1148, 1183, 1539, 1731, 1808
Tru1I TTAA 9 cut(s) 407, 1158, 1277, 1320, 1493, 1670, 1985, 2019, 2133
Tru9I TTAA 9 cut(s) 407, 1158, 1277, 1320, 1493, 1670, 1985, 2019, 2133
TscAI CASTG 9 cut(s) 80, 196, 376, 702, 1569, 1603, 1702, 2068, 2233
TseFI GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1617
Tsp45I GTSAC 6 cut(s) 68, 255, 362, 903, 973, 1617
TspGWI ACGGA 1 cut(s) 2142
TspMI CCCGGG 1 cut(s) 1920
TspRI CASTG 9 cut(s) 80, 196, 376, 702, 1569, 1603, 1702, 2068, 2233
Van91I CCANNNNNTGG 1 cut(s) 1472
VpaK11BI GGWCC 1 cut(s) 956
VspI ATTAAT 2 cut(s) 1158, 1985
XapI RAATTY 2 cut(s) 114, 159
XceI RCATGY 4 cut(s) 953, 970, 1382, 1755
XhoI CTCGAG 2 cut(s) 123, 1886
XmaI CCCGGG 1 cut(s) 1920
XmiI GTMKAC 2 cut(s) 1999, 2076
XmnI GAANNNNTTC 1 cut(s) 1176
XspI CTAG 4 cut(s) 141, 480, 599, 2115
ZrmI AGTACT 1 cut(s) 2109
Zsp2I ATGCAT 1 cut(s) 1757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.