RLG00000012592

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001434
Physical Location & Seq
Reverse (-)
20299769 .. 20305722
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012592

Sequence Viewer

Length: 2358 bp
ATGCCGACGTGTCATAAGCTCAACCCTCAGAATCTTCAGATGGACGCACCAATCTTCAGAATTATGAAAGTAAAGAAAGCAAAGGGGGCATTTTCGTCAAAAGGCATGGATCCCCAATCGGGGTTTCGTAAATCGACCCGAAAGAAAAAGAAACTATATAAGAAAAGAGAGGAACAAACAGAGCCCCTCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTGGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAGGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATCTAGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCCGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGGTTCCACCCTTCACAACCAGAAATAATTGCTAGTGGGGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCAACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAGTGAACGCCATAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTATCACCATCTATAGATAATCCAAGAAGAGAAATGCAGGGGGATGGGCATGTTGGTCCAAATAACATGCAAGTCACTTCTGCTTTACGTCAGTTTGAAGCAGTTGCAAATGGAACAGAGCAGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAACGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGACGCCAGCATGAAAACTTTACTAATGTAGATTCTGCCATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTCGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAACCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATACTGGTTCTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCGGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAATCTGGGGATGGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCTTGTGTTGCATGCATGGTTCCTGATATGGAAGCTGAACCTGGACTACAAAGTGTAGTCCATCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTTGAGGAGGCAACATTTGGTTCAATACTCGCGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCATATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGTGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAATTTGATAGCGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

786

Amino Acids

86.13

Weight (kDa)

8.13

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 142 - 252 1.5e-09 WDR55
Beta-prop_THOC3 PF25174 143 - 281 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 143 - 255 3.5e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 143 - 249 9e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 144 - 285 1e-21 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 144 - 258 6.3e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 144 - 248 7.2e-11 WDHD1 first WD40 domain
EIF3I PF24805 144 - 240 9.3e-06 EIF3I
WD40_Prp19 PF24814 145 - 274 1.6e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 146 - 253 2.4e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 183 - 273 1.3e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 967, 1559
AccI GTMKAC 2 cut(s) 2086, 2163
AccII CGCG 1 cut(s) 2003
AciI CCGC 2 cut(s) 1753, 1827
AclI AACGTT 1 cut(s) 942
AclWI GGATC 7 cut(s) 104, 117, 609, 630, 655, 1346, 2035
AcoI YGGCCR 1 cut(s) 529
AcsI RAATTY 2 cut(s) 222, 267
AcuI CTGAAG 4 cut(s) 20, 40, 852, 1440
AcvI CACGTG 1 cut(s) 653
AcyI GRCGYC 2 cut(s) 1234, 2089
AdeI CACNNNGTG 3 cut(s) 470, 481, 730
AfaI GTAC 5 cut(s) 389, 402, 1551, 2139, 2196
AfeI AGCGCT 2 cut(s) 1525, 2308
AfiI CCNNNNNNNGG 7 cut(s) 119, 120, 967, 1436, 1559, 1920, 2246
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 3 cut(s) 781, 1106, 1995
AjiI CACGTC 2 cut(s) 9, 2058
AjnI CCWGG 5 cut(s) 247, 383, 545, 1867, 2349
AjuI GAANNNNNNNTTGG 4 cut(s) 108, 140, 1398, 1430
Alw26I GTCTC 3 cut(s) 768, 1199, 1225
AlwI GGATC 7 cut(s) 104, 117, 609, 630, 655, 1346, 2035
AlwNI CAGNNNCTG 3 cut(s) 390, 1559, 1667
Ama87I CYCGRG 2 cut(s) 231, 2007
Aor51HI AGCGCT 2 cut(s) 1525, 2308
AoxI GGCC 3 cut(s) 301, 337, 529
ApoI RAATTY 2 cut(s) 222, 267
AseI ATTAAT 2 cut(s) 1272, 2072
Asp700I GAANNNNTTC 1 cut(s) 1290
AspLEI GCGC 2 cut(s) 1526, 2309
AspS9I GGNCC 2 cut(s) 302, 1064
AsuC2I CCSGG 4 cut(s) 1510, 1921, 2008, 2009
AsuHPI GGTGA 5 cut(s) 482, 565, 806, 1005, 2043
AvaI CYCGRG 2 cut(s) 231, 2007
AvaII GGWCC 1 cut(s) 1064
BaeGI GKGCMC 1 cut(s) 1796
BaeI ACNNNNGTAYC 4 cut(s) 1488, 1521, 2121, 2154
BalI TGGCCA 1 cut(s) 531
BamHI GGATCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 186
BbrPI CACGTG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 846
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 5 cut(s) 249, 385, 547, 1869, 2351
BciVI GTATCC 1 cut(s) 1516
BcnI CCSGG 4 cut(s) 1510, 1921, 2008, 2009
BcoDI GTCTC 3 cut(s) 768, 1199, 1225
BfaI CTAG 5 cut(s) 398, 588, 707, 951, 2202
BfmI CTRYAG 5 cut(s) 1020, 1224, 1659, 1668, 2164
BfoI RGCGCY 2 cut(s) 1527, 2310
BfuI GTATCC 1 cut(s) 1516
BlpI GCTNAGC 2 cut(s) 330, 1608
BmcAI AGTACT 1 cut(s) 2196
Bme1390I CCNGG 9 cut(s) 249, 385, 547, 1510, 1869, 1921, 2008, 2009, 2351
Bme18I GGWCC 1 cut(s) 1064
BmeT110I CYCGRG 2 cut(s) 231, 2007
BmgBI CACGTC 2 cut(s) 9, 2058
BmgT120I GGNCC 2 cut(s) 302, 1064
BmiI GGNNCC 3 cut(s) 111, 560, 1848
BmrFI CCNGG 9 cut(s) 249, 385, 547, 1510, 1869, 1921, 2008, 2009, 2351
BmsI GCATC 8 cut(s) 316, 683, 725, 1186, 1206, 1413, 1739, 1933
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 846
Bpu1102I GCTNAGC 2 cut(s) 330, 1608
BpuEI CTTGAG 2 cut(s) 1994, 2177
BpuMI CCSGG 4 cut(s) 1510, 1921, 2008, 2009
BsaAI YACGTR 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 660
BsaHI GRCGYC 2 cut(s) 1234, 2089
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 7 cut(s) 119, 120, 967, 1436, 1559, 1920, 2246
Bse1I ACTGG 6 cut(s) 304, 508, 1474, 1630, 1656, 2044
Bse3DI GCAATG 2 cut(s) 420, 1491
Bse8I GATNNNNATC 1 cut(s) 660
BseBI CCWGG 5 cut(s) 249, 385, 547, 1869, 2351
BseGI GGATG 6 cut(s) 674, 1057, 1570, 1910, 1924, 2236
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 7 cut(s) 119, 120, 967, 1436, 1559, 1920, 2246
BseMI GCAATG 2 cut(s) 420, 1491
BseMII CTCAG 9 cut(s) 41, 202, 297, 627, 837, 1560, 1622, 1947, 2052
BseNI ACTGG 6 cut(s) 304, 508, 1474, 1630, 1656, 2044
BseRI GAGGAG 3 cut(s) 219, 396, 1991
BseSI GKGCMC 1 cut(s) 1796
BseYI CCCAGC 2 cut(s) 1442, 2246
BsgI GTGCAG 2 cut(s) 2007, 2226
Bsh1236I CGCG 1 cut(s) 2003
BshFI GGCC 3 cut(s) 303, 339, 531
BsiHKCI CYCGRG 2 cut(s) 231, 2007
BsiSI CCGG 4 cut(s) 900, 1509, 1921, 2008
BslFI GGGAC 2 cut(s) 423, 1990
BslI CCNNNNNNNGG 7 cut(s) 119, 120, 967, 1436, 1559, 1920, 2246
BsmAI GTCTC 3 cut(s) 768, 1199, 1225
BsmBI CGTCTC 2 cut(s) 768, 1225
BsmFI GGGAC 2 cut(s) 423, 1990
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 3 cut(s) 303, 339, 531
BsoBI CYCGRG 2 cut(s) 231, 2007
Bsp1286I GDGCHC 2 cut(s) 186, 1796
Bsp143I GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
Bsp1720I GCTNAGC 2 cut(s) 330, 1608
Bsp19I CCATGG 4 cut(s) 678, 1152, 1200, 2092
BspACI CCGC 2 cut(s) 1753, 1827
BspANI GGCC 3 cut(s) 303, 339, 531
BspCNI CTCAG 9 cut(s) 40, 201, 298, 628, 838, 1559, 1621, 1946, 2053
BspFNI CGCG 1 cut(s) 2003
BspLI GGNNCC 3 cut(s) 111, 560, 1848
BspMAI CTGCAG 1 cut(s) 1672
BspPI GGATC 7 cut(s) 104, 117, 609, 630, 655, 1346, 2035
BsrDI GCAATG 2 cut(s) 420, 1491
BsrI ACTGG 6 cut(s) 304, 508, 1474, 1630, 1656, 2044
BssMI GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
BssNI GRCGYC 2 cut(s) 1234, 2089
BssT1I CCWWGG 6 cut(s) 410, 678, 1152, 1200, 1381, 2092
Bst2UI CCWGG 5 cut(s) 249, 385, 547, 1869, 2351
Bst4CI ACNGT 8 cut(s) 258, 392, 454, 481, 1687, 2137, 2152, 2315
Bst6I CTCTTC 5 cut(s) 298, 871, 1030, 1308, 2106
BstACI GRCGYC 2 cut(s) 1234, 2089
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 1221, 1238, 1840, 2230
BstDSI CCRYGG 4 cut(s) 678, 1152, 1200, 2092
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 6 cut(s) 674, 1057, 1570, 1910, 1924, 2236
BstFNI CGCG 1 cut(s) 2003
BstH2I RGCGCY 2 cut(s) 1527, 2310
BstHHI GCGC 2 cut(s) 1526, 2309
BstKTI GATC 7 cut(s) 112, 604, 625, 650, 859, 1354, 2043
BstMAI GTCTC 3 cut(s) 768, 1199, 1225
BstMBI GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
BstMWI GCNNNNNNNGC 9 cut(s) 86, 309, 680, 689, 1661, 1664, 1835, 2009, 2018
BstNI CCWGG 5 cut(s) 249, 385, 547, 1869, 2351
BstNSI RCATGY 3 cut(s) 1061, 1078, 1842
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 9 cut(s) 247, 383, 545, 1508, 1867, 1919, 2006, 2007, 2349
BstSFI CTRYAG 5 cut(s) 1020, 1224, 1659, 1668, 2164
BstSLI GKGCMC 1 cut(s) 1796
BstUI CGCG 1 cut(s) 2003
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 3 cut(s) 109, 622, 1351
BstXI CCANNNNNNTGG 2 cut(s) 1362, 1469
BstYI RGATCY 3 cut(s) 109, 622, 1351
BsuI GTATCC 1 cut(s) 1516
BsuRI GGCC 3 cut(s) 303, 339, 531
BtgI CCRYGG 4 cut(s) 678, 1152, 1200, 2092
BtrI CACGTC 2 cut(s) 9, 2058
BtsCI GGATG 6 cut(s) 674, 1057, 1570, 1910, 1924, 2236
BtsI GCAGTG 2 cut(s) 810, 1789
BtsIMutI CAGTG 8 cut(s) 297, 477, 810, 1649, 1683, 1789, 2148, 2320
Cac8I GCNNGC 4 cut(s) 1221, 1238, 1840, 2230
CaiI CAGNNNCTG 3 cut(s) 390, 1559, 1667
CfoI GCGC 2 cut(s) 1526, 2309
Cfr13I GGNCC 2 cut(s) 302, 1064
Cfr9I CCCGGG 1 cut(s) 2007
CseI GACGC 4 cut(s) 53, 1242, 1992, 2097
Csp6I GTAC 5 cut(s) 388, 401, 1550, 2138, 2195
CviQI GTAC 5 cut(s) 388, 401, 1550, 2138, 2195
DpnI GATC 7 cut(s) 111, 603, 624, 649, 858, 1353, 2042
DpnII GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
DraIII CACNNNGTG 3 cut(s) 470, 481, 730
EaeI YGGCCR 1 cut(s) 529
Eam1104I CTCTTC 5 cut(s) 298, 871, 1030, 1308, 2106
EarI CTCTTC 5 cut(s) 298, 871, 1030, 1308, 2106
Eco130I CCWWGG 6 cut(s) 410, 678, 1152, 1200, 1381, 2092
Eco24I GRGCYC 1 cut(s) 186
Eco47I GGWCC 1 cut(s) 1064
Eco47III AGCGCT 2 cut(s) 1525, 2308
Eco57I CTGAAG 4 cut(s) 20, 40, 852, 1440
Eco72I CACGTG 1 cut(s) 653
Eco88I CYCGRG 2 cut(s) 231, 2007
Eco91I GGTNACC 1 cut(s) 470
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 5 cut(s) 247, 383, 545, 1867, 2349
EcoT14I CCWWGG 6 cut(s) 410, 678, 1152, 1200, 1381, 2092
EcoT22I ATGCAT 1 cut(s) 1844
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 6 cut(s) 410, 678, 1152, 1200, 1381, 2092
Esp3I CGTCTC 2 cut(s) 768, 1225
FalI AAGNNNNNCTT 2 cut(s) 2268, 2300
FaqI GGGAC 2 cut(s) 423, 1990
FauNDI CATATG 1 cut(s) 987
FblI GTMKAC 2 cut(s) 2086, 2163
FokI GGATG 6 cut(s) 661, 1064, 1577, 1897, 1911, 2223
FriOI GRGCYC 1 cut(s) 186
FspBI CTAG 5 cut(s) 398, 588, 707, 951, 2202
GlaI GCGC 2 cut(s) 1525, 2308
GsaI CCCAGC 2 cut(s) 1446, 2250
GsuI CTGGAG 1 cut(s) 750
HaeII RGCGCY 2 cut(s) 1527, 2310
HaeIII GGCC 3 cut(s) 303, 339, 531
HapII CCGG 4 cut(s) 900, 1509, 1921, 2008
HgaI GACGC 4 cut(s) 53, 1242, 1992, 2097
HhaI GCGC 2 cut(s) 1526, 2309
Hin1I GRCGYC 2 cut(s) 1234, 2089
Hin6I GCGC 2 cut(s) 1524, 2307
HinP1I GCGC 2 cut(s) 1524, 2307
HincII GTYRAC 3 cut(s) 417, 1392, 2087
HindII GTYRAC 3 cut(s) 417, 1392, 2087
HindIII AAGCTT 1 cut(s) 2282
HpaI GTTAAC 1 cut(s) 1392
HpaII CCGG 4 cut(s) 900, 1509, 1921, 2008
HphI GGTGA 5 cut(s) 482, 565, 806, 1005, 2043
Hpy166II GTNNAC 6 cut(s) 417, 794, 956, 1392, 2087, 2164
Hpy188III TCNNGA 9 cut(s) 440, 605, 720, 767, 860, 1850, 1892, 1899, 2156
Hpy8I GTNNAC 6 cut(s) 417, 794, 956, 1392, 2087, 2164
Hpy99I CGWCG 2 cut(s) 10, 2091
HpyAV CCTTC 6 cut(s) 350, 501, 576, 927, 1734, 2270
HpyCH4III ACNGT 8 cut(s) 258, 392, 454, 481, 1687, 2137, 2152, 2315
HpyCH4IV ACGT 5 cut(s) 8, 652, 942, 1096, 2057
HpyF10VI GCNNNNNNNGC 9 cut(s) 86, 309, 680, 689, 1661, 1664, 1835, 2009, 2018
HpySE526I ACGT 5 cut(s) 8, 652, 942, 1096, 2057
Hsp92I GRCGYC 2 cut(s) 1234, 2089
HspAI GCGC 2 cut(s) 1524, 2307
KspAI GTTAAC 1 cut(s) 1392
Kzo9I GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
LmnI GCTCC 3 cut(s) 832, 1366, 1735
LweI GCATC 8 cut(s) 316, 683, 725, 1186, 1206, 1413, 1739, 1933
MaeI CTAG 5 cut(s) 398, 588, 707, 951, 2202
MaeII ACGT 5 cut(s) 8, 652, 942, 1096, 2057
MaeIII GTNAC 5 cut(s) 363, 470, 1081, 1674, 1704
MalI GATC 7 cut(s) 111, 603, 624, 649, 858, 1353, 2042
MboI GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
MflI RGATCY 3 cut(s) 109, 622, 1351
MhlI GDGCHC 2 cut(s) 186, 1796
MlsI TGGCCA 1 cut(s) 531
MluCI AATT 9 cut(s) 60, 222, 267, 489, 582, 1638, 1902, 2073, 2297
MluNI TGGCCA 1 cut(s) 531
MlyI GAGTC 3 cut(s) 371, 857, 2298
Mox20I TGGCCA 1 cut(s) 531
Mph1103I ATGCAT 1 cut(s) 1844
MroXI GAANNNNTTC 1 cut(s) 1290
MscI TGGCCA 1 cut(s) 531
MseI TTAA 9 cut(s) 515, 1272, 1391, 1434, 1580, 1757, 2072, 2106, 2220
MslI CAYNNNNRTG 1 cut(s) 951
Msp20I TGGCCA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 1667
MspI CCGG 4 cut(s) 900, 1509, 1921, 2008
MspR9I CCNGG 9 cut(s) 249, 385, 547, 1510, 1869, 1921, 2008, 2009, 2351
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 5 cut(s) 249, 385, 547, 1869, 2351
MvnI CGCG 1 cut(s) 2003
MwoI GCNNNNNNNGC 9 cut(s) 86, 309, 680, 689, 1661, 1664, 1835, 2009, 2018
NciI CCSGG 4 cut(s) 1510, 1921, 2008, 2009
NcoI CCATGG 4 cut(s) 678, 1152, 1200, 2092
NdeI CATATG 1 cut(s) 987
NdeII GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
NlaIV GGNNCC 3 cut(s) 111, 560, 1848
NmeAIII GCCGAG 1 cut(s) 1300
NmuCI GTSAC 4 cut(s) 363, 470, 1081, 1704
NsiI ATGCAT 1 cut(s) 1844
NspI RCATGY 3 cut(s) 1061, 1078, 1842
PaeI GCATGC 1 cut(s) 1842
PaeR7I CTCGAG 1 cut(s) 231
PasI CCCWGGG 1 cut(s) 546
PcsI WCGNNNNNNNCGW 1 cut(s) 1327
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 1 cut(s) 1290
PfeI GAWTC 9 cut(s) 31, 287, 872, 1262, 1297, 1556, 1626, 1818, 1895
PflMI CCANNNNNTGG 2 cut(s) 967, 1559
PleI GAGTC 3 cut(s) 370, 857, 2297
PmaCI CACGTG 1 cut(s) 653
PmlI CACGTG 1 cut(s) 653
PpsI GAGTC 3 cut(s) 370, 857, 2297
Ppu21I YACGTR 1 cut(s) 653
PshBI ATTAAT 2 cut(s) 1272, 2072
Psp1406I AACGTT 1 cut(s) 942
Psp6I CCWGG 5 cut(s) 247, 383, 545, 1867, 2349
PspCI CACGTG 1 cut(s) 653
PspEI GGTNACC 1 cut(s) 470
PspFI CCCAGC 2 cut(s) 1442, 2246
PspGI CCWGG 5 cut(s) 247, 383, 545, 1867, 2349
PspN4I GGNNCC 3 cut(s) 111, 560, 1848
PspPI GGNCC 2 cut(s) 302, 1064
PspXI VCTCGAGB 1 cut(s) 231
PsrI GAACNNNNNNTAC 2 cut(s) 1857, 1889
PstI CTGCAG 1 cut(s) 1672
PstNI CAGNNNCTG 3 cut(s) 390, 1559, 1667
PsuI RGATCY 3 cut(s) 109, 622, 1351
PvuII CAGCTG 1 cut(s) 1667
RsaI GTAC 5 cut(s) 389, 402, 1551, 2139, 2196
RsaNI GTAC 5 cut(s) 388, 401, 1550, 2138, 2195
RseI CAYNNNNRTG 1 cut(s) 951
SalI GTCGAC 1 cut(s) 2085
SaqAI TTAA 9 cut(s) 515, 1272, 1391, 1434, 1580, 1757, 2072, 2106, 2220
Sau3AI GATC 7 cut(s) 109, 601, 622, 647, 856, 1351, 2040
Sau96I GGNCC 2 cut(s) 302, 1064
ScaI AGTACT 1 cut(s) 2196
SchI GAGTC 3 cut(s) 371, 857, 2298
ScrFI CCNGG 9 cut(s) 249, 385, 547, 1510, 1869, 1921, 2008, 2009, 2351
SduI GDGCHC 2 cut(s) 186, 1796
SfaNI GCATC 8 cut(s) 316, 683, 725, 1186, 1206, 1413, 1739, 1933
SfcI CTRYAG 5 cut(s) 1020, 1224, 1659, 1668, 2164
Sfr274I CTCGAG 1 cut(s) 231
SinI GGWCC 1 cut(s) 1064
SlaI CTCGAG 1 cut(s) 231
SmaI CCCGGG 1 cut(s) 2009
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 3 cut(s) 231, 1973, 2156
SmoI CTYRAG 3 cut(s) 231, 1973, 2156
SphI GCATGC 1 cut(s) 1842
Sse9I AATT 9 cut(s) 60, 222, 267, 489, 582, 1638, 1902, 2073, 2297
SsiI CCGC 2 cut(s) 1753, 1827
SspI AATATT 1 cut(s) 1291
SspMI CTAG 5 cut(s) 398, 588, 707, 951, 2202
StyD4I CCNGG 9 cut(s) 247, 383, 545, 1508, 1867, 1919, 2006, 2007, 2349
StyI CCWWGG 6 cut(s) 410, 678, 1152, 1200, 1381, 2092
TaaI ACNGT 8 cut(s) 258, 392, 454, 481, 1687, 2137, 2152, 2315
TaiI ACGT 5 cut(s) 11, 655, 945, 1099, 2060
TaqI TCGA 6 cut(s) 134, 232, 664, 1421, 2039, 2086
TasI AATT 9 cut(s) 60, 222, 267, 489, 582, 1638, 1902, 2073, 2297
TatI WGTACW 1 cut(s) 2194
TauI GCSGC 2 cut(s) 1755, 1829
TfiI GAWTC 9 cut(s) 31, 287, 872, 1262, 1297, 1556, 1626, 1818, 1895
Tru1I TTAA 9 cut(s) 515, 1272, 1391, 1434, 1580, 1757, 2072, 2106, 2220
Tru9I TTAA 9 cut(s) 515, 1272, 1391, 1434, 1580, 1757, 2072, 2106, 2220
TscAI CASTG 8 cut(s) 304, 484, 810, 1656, 1690, 1789, 2155, 2320
TseFI GTSAC 4 cut(s) 363, 470, 1081, 1704
Tsp45I GTSAC 4 cut(s) 363, 470, 1081, 1704
TspDTI ATGAA 8 cut(s) 80, 336, 677, 935, 1257, 1295, 1617, 2225
TspGWI ACGGA 1 cut(s) 2229
TspMI CCCGGG 1 cut(s) 2007
TspRI CASTG 8 cut(s) 304, 484, 810, 1656, 1690, 1789, 2155, 2320
Van91I CCANNNNNTGG 2 cut(s) 967, 1559
VpaK11BI GGWCC 1 cut(s) 1064
VspI ATTAAT 2 cut(s) 1272, 2072
XapI RAATTY 2 cut(s) 222, 267
XceI RCATGY 3 cut(s) 1061, 1078, 1842
XcmI CCANNNNNNNNNTGG 1 cut(s) 1895
XhoI CTCGAG 1 cut(s) 231
XmaI CCCGGG 1 cut(s) 2007
XmiI GTMKAC 2 cut(s) 2086, 2163
XmnI GAANNNNTTC 1 cut(s) 1290
XspI CTAG 5 cut(s) 398, 588, 707, 951, 2202
ZrmI AGTACT 1 cut(s) 2196
Zsp2I ATGCAT 1 cut(s) 1844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.