Rh6BG292000

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001434
Physical Location & Seq
Forward (+)
51753171 .. 51758741
5571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG292000.1

Sequence Viewer

Length: 2160 bp
ATGAAGTCCGATCTTATGATGACGGGGCCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAAAGTCACCACTGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTAGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCCGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGGTTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCAGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAGTGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACGTCAGTTTGAAGCAGTTGCAAATGCAACAGAGCAGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAACGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTTGGCAACCTCGTCACATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGCACCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGTGTATCCGGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAATCTGGGGATGGTGTTGCTCTCTTAAATGCCCTGCGTGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTACGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGACGCTGAACCTGGATTACAAAGTGTAGTCCATCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTTGCGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCATATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTGTTTACACTGTTCTTGAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

719

Amino Acids

78.46

Weight (kDa)

6.46

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 105 - 215 1.3e-09 WDR55
Beta-prop_THOC3 PF25174 106 - 244 1.1e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 106 - 218 3e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 106 - 212 7.9e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 107 - 248 8.2e-22 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 107 - 221 5.5e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 107 - 211 5.2e-11 WDHD1 first WD40 domain
EIF3I PF24805 107 - 203 8.3e-06 EIF3I
WD40_Prp19 PF24814 108 - 237 1.4e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 109 - 216 2.1e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 112 - 214 1.3e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 146 - 217 1.2e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1475
AccI GTMKAC 1 cut(s) 2002
AciI CCGC 3 cut(s) 483, 1669, 1743
AclI AACGTT 1 cut(s) 831
AclWI GGATC 5 cut(s) 498, 519, 544, 1235, 1951
AcoI YGGCCR 2 cut(s) 60, 418
AcsI RAATTY 2 cut(s) 111, 156
AcuI CTGAAG 2 cut(s) 741, 1329
AcvI CACGTG 1 cut(s) 542
AcyI GRCGYC 1 cut(s) 2005
AdeI CACNNNGTG 3 cut(s) 359, 370, 619
AfaI GTAC 4 cut(s) 278, 291, 1467, 2055
AfeI AGCGCT 1 cut(s) 1441
AfiI CCNNNNNNNGG 4 cut(s) 856, 1325, 1475, 1836
AflIII ACRYGT 1 cut(s) 1381
AgsI TTSAA 4 cut(s) 245, 670, 995, 1911
AjiI CACGTC 1 cut(s) 1974
AjnI CCWGG 4 cut(s) 272, 434, 1783, 2151
AjuI GAANNNNNNNTTGG 4 cut(s) 1287, 1319, 1887, 1919
Alw21I GWGCWC 1 cut(s) 2113
Alw26I GTCTC 2 cut(s) 657, 1088
AlwI GGATC 5 cut(s) 498, 519, 544, 1235, 1951
AlwNI CAGNNNCTG 3 cut(s) 279, 1475, 1583
Ama87I CYCGRG 3 cut(s) 120, 1889, 1923
Aor51HI AGCGCT 1 cut(s) 1441
AoxI GGCC 5 cut(s) 26, 60, 190, 226, 418
ApoI RAATTY 2 cut(s) 111, 156
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AseI ATTAAT 2 cut(s) 1161, 1988
Asp700I GAANNNNTTC 1 cut(s) 1179
AspLEI GCGC 1 cut(s) 1442
AspS9I GGNCC 3 cut(s) 26, 191, 953
AsuC2I CCSGG 4 cut(s) 1426, 1837, 1924, 1925
AsuHPI GGTGA 6 cut(s) 62, 371, 454, 695, 894, 1959
AvaI CYCGRG 3 cut(s) 120, 1889, 1923
AvaII GGWCC 1 cut(s) 953
BaeGI GKGCMC 1 cut(s) 1712
BaeI ACNNNNGTAYC 4 cut(s) 1404, 1437, 2037, 2070
BalI TGGCCA 1 cut(s) 420
BbrPI CACGTG 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 1 cut(s) 2113
BbvCI CCTCAGC 1 cut(s) 735
BccI CCATC 9 cut(s) 326, 558, 913, 935, 1063, 1475, 1505, 1812, 2033
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 4 cut(s) 274, 436, 1785, 2153
BciVI GTATCC 1 cut(s) 1432
BcnI CCSGG 4 cut(s) 1426, 1837, 1924, 1925
BcoDI GTCTC 2 cut(s) 657, 1088
BfaI CTAG 4 cut(s) 138, 477, 596, 840
BfmI CTRYAG 5 cut(s) 76, 909, 1113, 1575, 1584
BfoI RGCGCY 1 cut(s) 1443
BfuI GTATCC 1 cut(s) 1432
BlpI GCTNAGC 2 cut(s) 219, 1524
Bme1390I CCNGG 8 cut(s) 274, 436, 1426, 1785, 1837, 1924, 1925, 2153
Bme18I GGWCC 1 cut(s) 953
BmeT110I CYCGRG 3 cut(s) 120, 1889, 1923
BmgBI CACGTC 1 cut(s) 1974
BmgT120I GGNCC 3 cut(s) 26, 191, 953
BmiI GGNNCC 3 cut(s) 27, 449, 1764
BmrFI CCNGG 8 cut(s) 274, 436, 1426, 1785, 1837, 1924, 1925, 2153
BmsI GCATC 8 cut(s) 205, 572, 614, 1075, 1095, 1302, 1655, 1849
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 639, 2081
Bpu10I CCTNAGC 1 cut(s) 735
Bpu1102I GCTNAGC 2 cut(s) 219, 1524
BpuEI CTTGAG 1 cut(s) 2093
BpuMI CCSGG 4 cut(s) 1426, 1837, 1924, 1925
BsaAI YACGTR 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 2005
BsaXI ACNNNNNCTCC 2 cut(s) 1021, 1051
Bsc4I CCNNNNNNNGG 4 cut(s) 856, 1325, 1475, 1836
Bse118I RCCGGY 1 cut(s) 58
Bse1I ACTGG 7 cut(s) 193, 397, 1416, 1546, 1572, 1960, 2098
Bse3DI GCAATG 2 cut(s) 309, 1407
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 4 cut(s) 274, 436, 1785, 2153
BseGI GGATG 5 cut(s) 563, 946, 1486, 1826, 1840
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 856, 1325, 1475, 1836
BseMI GCAATG 2 cut(s) 309, 1407
BseMII CTCAG 7 cut(s) 186, 516, 726, 1476, 1538, 1863, 1968
BseNI ACTGG 7 cut(s) 193, 397, 1416, 1546, 1572, 1960, 2098
BseRI GAGGAG 2 cut(s) 108, 285
BseSI GKGCMC 1 cut(s) 1712
BseX3I CGGCCG 1 cut(s) 60
BseYI CCCAGC 1 cut(s) 1331
BsgI GTGCAG 1 cut(s) 1923
Bsh1285I CGRYCG 1 cut(s) 63
BshFI GGCC 5 cut(s) 28, 62, 192, 228, 420
BsiEI CGRYCG 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 2113
BsiHKCI CYCGRG 3 cut(s) 120, 1889, 1923
BsiSI CCGG 4 cut(s) 59, 1425, 1837, 1924
BslFI GGGAC 2 cut(s) 312, 1906
BslI CCNNNNNNNGG 4 cut(s) 856, 1325, 1475, 1836
BsmAI GTCTC 2 cut(s) 657, 1088
BsmBI CGTCTC 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 312, 1906
BsmI GAATGC 1 cut(s) 646
BsnI GGCC 5 cut(s) 28, 62, 192, 228, 420
BsoBI CYCGRG 3 cut(s) 120, 1889, 1923
Bsp1286I GDGCHC 2 cut(s) 1712, 2113
Bsp143I GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
Bsp1720I GCTNAGC 2 cut(s) 219, 1524
Bsp19I CCATGG 4 cut(s) 567, 1041, 1089, 2008
BspACI CCGC 3 cut(s) 483, 1669, 1743
BspANI GGCC 5 cut(s) 28, 62, 192, 228, 420
BspCNI CTCAG 7 cut(s) 187, 517, 727, 1475, 1537, 1862, 1969
BspLI GGNNCC 3 cut(s) 27, 449, 1764
BspMAI CTGCAG 2 cut(s) 80, 1588
BspPI GGATC 5 cut(s) 498, 519, 544, 1235, 1951
BsrDI GCAATG 2 cut(s) 309, 1407
BsrFI RCCGGY 1 cut(s) 58
BsrI ACTGG 7 cut(s) 193, 397, 1416, 1546, 1572, 1960, 2098
BssAI RCCGGY 1 cut(s) 58
BssMI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
BssNI GRCGYC 1 cut(s) 2005
BssT1I CCWWGG 7 cut(s) 299, 567, 1041, 1089, 1208, 1270, 2008
Bst2UI CCWGG 4 cut(s) 274, 436, 1785, 2153
Bst4CI ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1603, 2053, 2068, 2117
Bst6I CTCTTC 4 cut(s) 187, 760, 1197, 2022
BstACI GRCGYC 1 cut(s) 2005
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 60, 1110, 1127, 1756
BstDSI CCRYGG 4 cut(s) 567, 1041, 1089, 2008
BstEII GGTNACC 1 cut(s) 359
BstF5I GGATG 5 cut(s) 563, 946, 1486, 1826, 1840
BstH2I RGCGCY 1 cut(s) 1443
BstHHI GCGC 1 cut(s) 1442
BstKTI GATC 8 cut(s) 13, 46, 493, 514, 539, 748, 1243, 1959
BstMAI GTCTC 2 cut(s) 657, 1088
BstMBI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
BstMCI CGRYCG 1 cut(s) 63
BstMWI GCNNNNNNNGC 8 cut(s) 198, 569, 578, 1577, 1580, 1751, 1925, 1934
BstNI CCWGG 4 cut(s) 274, 436, 1785, 2153
BstNSI RCATGY 4 cut(s) 950, 967, 1385, 1758
BstPI GGTNACC 1 cut(s) 359
BstSCI CCNGG 8 cut(s) 272, 434, 1424, 1783, 1835, 1922, 1923, 2151
BstSFI CTRYAG 5 cut(s) 76, 909, 1113, 1575, 1584
BstSLI GKGCMC 1 cut(s) 1712
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 2 cut(s) 511, 1240
BstXI CCANNNNNNTGG 2 cut(s) 1251, 1358
BstYI RGATCY 2 cut(s) 511, 1240
BstZI CGGCCG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 1432
BsuRI GGCC 5 cut(s) 28, 62, 192, 228, 420
BtgI CCRYGG 4 cut(s) 567, 1041, 1089, 2008
BtrI CACGTC 1 cut(s) 1974
BtsCI GGATG 5 cut(s) 563, 946, 1486, 1826, 1840
BtsI GCAGTG 3 cut(s) 73, 699, 1705
Cac8I GCNNGC 4 cut(s) 60, 1110, 1127, 1756
CaiI CAGNNNCTG 3 cut(s) 279, 1475, 1583
CfoI GCGC 1 cut(s) 1442
Cfr10I RCCGGY 1 cut(s) 58
Cfr13I GGNCC 3 cut(s) 26, 191, 953
Cfr9I CCCGGG 1 cut(s) 1923
CseI GACGC 3 cut(s) 1784, 1908, 2013
Csp6I GTAC 4 cut(s) 277, 290, 1466, 2054
CviQI GTAC 4 cut(s) 277, 290, 1466, 2054
DpnI GATC 8 cut(s) 12, 45, 492, 513, 538, 747, 1242, 1958
DpnII GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
DraIII CACNNNGTG 3 cut(s) 359, 370, 619
EaeI YGGCCR 2 cut(s) 60, 418
EagI CGGCCG 1 cut(s) 60
Eam1104I CTCTTC 4 cut(s) 187, 760, 1197, 2022
EarI CTCTTC 4 cut(s) 187, 760, 1197, 2022
EclXI CGGCCG 1 cut(s) 60
Eco130I CCWWGG 7 cut(s) 299, 567, 1041, 1089, 1208, 1270, 2008
Eco47I GGWCC 1 cut(s) 953
Eco47III AGCGCT 1 cut(s) 1441
Eco52I CGGCCG 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 741, 1329
Eco72I CACGTG 1 cut(s) 542
Eco88I CYCGRG 3 cut(s) 120, 1889, 1923
Eco91I GGTNACC 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 359
EcoRII CCWGG 4 cut(s) 272, 434, 1783, 2151
EcoT14I CCWWGG 7 cut(s) 299, 567, 1041, 1089, 1208, 1270, 2008
EcoT22I ATGCAT 1 cut(s) 1760
ErhI CCWWGG 7 cut(s) 299, 567, 1041, 1089, 1208, 1270, 2008
Esp3I CGTCTC 1 cut(s) 657
FalI AAGNNNNNCTT 2 cut(s) 2070, 2102
FaqI GGGAC 2 cut(s) 312, 1906
FauNDI CATATG 1 cut(s) 876
FblI GTMKAC 1 cut(s) 2002
FokI GGATG 5 cut(s) 550, 953, 1493, 1813, 1827
FspBI CTAG 4 cut(s) 138, 477, 596, 840
GlaI GCGC 1 cut(s) 1441
GsaI CCCAGC 1 cut(s) 1335
GsuI CTGGAG 2 cut(s) 639, 2081
HaeII RGCGCY 1 cut(s) 1443
HaeIII GGCC 5 cut(s) 28, 62, 192, 228, 420
HapII CCGG 4 cut(s) 59, 1425, 1837, 1924
HgaI GACGC 3 cut(s) 1784, 1908, 2013
HhaI GCGC 1 cut(s) 1442
Hin1I GRCGYC 1 cut(s) 2005
Hin6I GCGC 1 cut(s) 1440
HinP1I GCGC 1 cut(s) 1440
HincII GTYRAC 3 cut(s) 306, 1281, 2003
HindII GTYRAC 3 cut(s) 306, 1281, 2003
HindIII AAGCTT 1 cut(s) 2084
HpaI GTTAAC 1 cut(s) 1281
HpaII CCGG 4 cut(s) 59, 1425, 1837, 1924
HphI GGTGA 6 cut(s) 62, 371, 454, 695, 894, 1959
Hpy166II GTNNAC 6 cut(s) 306, 683, 845, 1281, 2003, 2062
Hpy188I TCNGA 9 cut(s) 10, 43, 526, 760, 1185, 1435, 1552, 1934, 1978
Hpy188III TCNNGA 9 cut(s) 329, 494, 609, 656, 749, 1766, 1808, 1815, 2072
Hpy8I GTNNAC 6 cut(s) 306, 683, 845, 1281, 2003, 2062
Hpy99I CGWCG 1 cut(s) 2007
HpyAV CCTTC 7 cut(s) 39, 239, 390, 465, 816, 1650, 2072
HpyCH4III ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1603, 2053, 2068, 2117
HpyCH4IV ACGT 4 cut(s) 541, 831, 985, 1973
HpyF10VI GCNNNNNNNGC 8 cut(s) 198, 569, 578, 1577, 1580, 1751, 1925, 1934
HpySE526I ACGT 4 cut(s) 541, 831, 985, 1973
Hsp92I GRCGYC 1 cut(s) 2005
HspAI GCGC 1 cut(s) 1440
KroI GCCGGC 1 cut(s) 58
KroNI GCCGGC 1 cut(s) 60
KspAI GTTAAC 1 cut(s) 1281
Kzo9I GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
LmnI GCTCC 3 cut(s) 721, 1255, 1651
LweI GCATC 8 cut(s) 205, 572, 614, 1075, 1095, 1302, 1655, 1849
MaeI CTAG 4 cut(s) 138, 477, 596, 840
MaeII ACGT 4 cut(s) 541, 831, 985, 1973
MaeIII GTNAC 9 cut(s) 68, 252, 359, 900, 959, 970, 1220, 1590, 1620
MalI GATC 8 cut(s) 12, 45, 492, 513, 538, 747, 1242, 1958
MboI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
MflI RGATCY 2 cut(s) 511, 1240
MhlI GDGCHC 2 cut(s) 1712, 2113
MlsI TGGCCA 1 cut(s) 420
MluCI AATT 9 cut(s) 111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
MluNI TGGCCA 1 cut(s) 420
MlyI GAGTC 3 cut(s) 260, 746, 2100
Mox20I TGGCCA 1 cut(s) 420
Mph1103I ATGCAT 1 cut(s) 1760
MroNI GCCGGC 1 cut(s) 58
MroXI GAANNNNTTC 1 cut(s) 1179
MscI TGGCCA 1 cut(s) 420
MseI TTAA 8 cut(s) 404, 1161, 1280, 1323, 1496, 1673, 1988, 2022
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 1583
MspI CCGG 4 cut(s) 59, 1425, 1837, 1924
MspR9I CCNGG 8 cut(s) 274, 436, 1426, 1785, 1837, 1924, 1925, 2153
Mva1269I GAATGC 1 cut(s) 646
MvaI CCWGG 4 cut(s) 274, 436, 1785, 2153
MwoI GCNNNNNNNGC 8 cut(s) 198, 569, 578, 1577, 1580, 1751, 1925, 1934
NaeI GCCGGC 1 cut(s) 60
NciI CCSGG 4 cut(s) 1426, 1837, 1924, 1925
NcoI CCATGG 4 cut(s) 567, 1041, 1089, 2008
NdeI CATATG 1 cut(s) 876
NdeII GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
NgoMIV GCCGGC 1 cut(s) 58
NlaIV GGNNCC 3 cut(s) 27, 449, 1764
NmuCI GTSAC 7 cut(s) 68, 252, 359, 900, 970, 1220, 1620
NsiI ATGCAT 1 cut(s) 1760
NspI RCATGY 4 cut(s) 950, 967, 1385, 1758
PaeI GCATGC 1 cut(s) 1758
PaeR7I CTCGAG 2 cut(s) 120, 1889
PasI CCCWGGG 1 cut(s) 435
PciI ACATGT 1 cut(s) 1381
PctI GAATGC 1 cut(s) 646
PdiI GCCGGC 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 1179
PfeI GAWTC 8 cut(s) 176, 761, 1151, 1186, 1472, 1542, 1734, 1811
PflMI CCANNNNNTGG 1 cut(s) 1475
PleI GAGTC 3 cut(s) 259, 746, 2099
PmaCI CACGTG 1 cut(s) 542
PmlI CACGTG 1 cut(s) 542
PpsI GAGTC 3 cut(s) 259, 746, 2099
Ppu21I YACGTR 1 cut(s) 542
PscI ACATGT 1 cut(s) 1381
PshBI ATTAAT 2 cut(s) 1161, 1988
Psp1406I AACGTT 1 cut(s) 831
Psp6I CCWGG 4 cut(s) 272, 434, 1783, 2151
PspCI CACGTG 1 cut(s) 542
PspEI GGTNACC 1 cut(s) 359
PspFI CCCAGC 1 cut(s) 1331
PspGI CCWGG 4 cut(s) 272, 434, 1783, 2151
PspN4I GGNNCC 3 cut(s) 27, 449, 1764
PspPI GGNCC 3 cut(s) 26, 191, 953
PspXI VCTCGAGB 2 cut(s) 120, 1889
PsrI GAACNNNNNNTAC 2 cut(s) 1773, 1805
PstI CTGCAG 2 cut(s) 80, 1588
PstNI CAGNNNCTG 3 cut(s) 279, 1475, 1583
PsuI RGATCY 2 cut(s) 511, 1240
PvuII CAGCTG 1 cut(s) 1583
RsaI GTAC 4 cut(s) 278, 291, 1467, 2055
RsaNI GTAC 4 cut(s) 277, 290, 1466, 2054
RseI CAYNNNNRTG 1 cut(s) 840
SalI GTCGAC 1 cut(s) 2001
SaqAI TTAA 8 cut(s) 404, 1161, 1280, 1323, 1496, 1673, 1988, 2022
Sau3AI GATC 8 cut(s) 10, 43, 490, 511, 536, 745, 1240, 1956
Sau96I GGNCC 3 cut(s) 26, 191, 953
SchI GAGTC 3 cut(s) 260, 746, 2100
ScrFI CCNGG 8 cut(s) 274, 436, 1426, 1785, 1837, 1924, 1925, 2153
SduI GDGCHC 2 cut(s) 1712, 2113
SfaNI GCATC 8 cut(s) 205, 572, 614, 1075, 1095, 1302, 1655, 1849
SfcI CTRYAG 5 cut(s) 76, 909, 1113, 1575, 1584
Sfr274I CTCGAG 2 cut(s) 120, 1889
SinI GGWCC 1 cut(s) 953
SlaI CTCGAG 2 cut(s) 120, 1889
SmaI CCCGGG 1 cut(s) 1925
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 3 cut(s) 120, 1889, 2072
SmoI CTYRAG 3 cut(s) 120, 1889, 2072
SphI GCATGC 1 cut(s) 1758
Sse9I AATT 9 cut(s) 111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
SsiI CCGC 3 cut(s) 483, 1669, 1743
SspI AATATT 1 cut(s) 1180
SspMI CTAG 4 cut(s) 138, 477, 596, 840
StyD4I CCNGG 8 cut(s) 272, 434, 1424, 1783, 1835, 1922, 1923, 2151
StyI CCWWGG 7 cut(s) 299, 567, 1041, 1089, 1208, 1270, 2008
TaaI ACNGT 9 cut(s) 39, 147, 281, 343, 370, 1603, 2053, 2068, 2117
TaiI ACGT 4 cut(s) 544, 834, 988, 1976
TaqI TCGA 6 cut(s) 121, 553, 1310, 1890, 1955, 2002
TasI AATT 9 cut(s) 111, 156, 283, 378, 471, 1369, 1554, 1818, 1989
TauI GCSGC 2 cut(s) 1671, 1745
TfiI GAWTC 8 cut(s) 176, 761, 1151, 1186, 1472, 1542, 1734, 1811
Tru1I TTAA 8 cut(s) 404, 1161, 1280, 1323, 1496, 1673, 1988, 2022
Tru9I TTAA 8 cut(s) 404, 1161, 1280, 1323, 1496, 1673, 1988, 2022
TseFI GTSAC 7 cut(s) 68, 252, 359, 900, 970, 1220, 1620
Tsp45I GTSAC 7 cut(s) 68, 252, 359, 900, 970, 1220, 1620
TspDTI ATGAA 8 cut(s) 17, 40, 225, 566, 824, 1146, 1184, 1533
TspMI CCCGGG 1 cut(s) 1923
Van91I CCANNNNNTGG 1 cut(s) 1475
VpaK11BI GGWCC 1 cut(s) 953
VspI ATTAAT 2 cut(s) 1161, 1988
XapI RAATTY 2 cut(s) 111, 156
XceI RCATGY 4 cut(s) 950, 967, 1385, 1758
XcmI CCANNNNNNNNNTGG 1 cut(s) 1811
XhoI CTCGAG 2 cut(s) 120, 1889
XmaI CCCGGG 1 cut(s) 1923
XmiI GTMKAC 1 cut(s) 2002
XmnI GAANNNNTTC 1 cut(s) 1179
XspI CTAG 4 cut(s) 138, 477, 596, 840
Zsp2I ATGCAT 1 cut(s) 1760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.