Rorug03G0351700

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001434
Physical Location & Seq
Reverse (-)
43013119 .. 43013484
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0351700.1

Sequence Viewer

Length: 282 bp
ATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAACTTTGGTTCCACCGATTCTACTGGTAATGAAGGATTTCTTGATTTAAATTTTGTTTCATATTCTTCCTCACACTTCACACTAATACCAGTACAACTCTTTTGGCACAACAGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

93

Amino Acids

10.07

Weight (kDa)

8.0

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 54, 67, 102
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 1 cut(s) 213
AfiI CCNNNNNNNGG 1 cut(s) 56
AhlI ACTAGT 2 cut(s) 41, 86
AjnI CCWGG 1 cut(s) 271
AloI GAACNNNNNNTCC 2 cut(s) 31, 63
AlwI GGATC 3 cut(s) 54, 67, 102
ApeKI GCWGC 1 cut(s) 20
ApoI RAATTY 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 2 cut(s) 43, 156
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 261
AvaII GGWCC 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 33
BamHI GGATCC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 7
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 273
BcuI ACTAGT 2 cut(s) 41, 86
BfaI CTAG 2 cut(s) 42, 87
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 81
BmiI GGNNCC 3 cut(s) 61, 82, 130
BmrFI CCNGG 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 31, 61
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse1I ACTGG 2 cut(s) 148, 209
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 148, 209
BseRI GAGGAG 2 cut(s) 274, 277
BseSI GKGCMC 1 cut(s) 33
BseXI GCAGC 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 56
Bsp1286I GDGCHC 1 cut(s) 33
Bsp143I GATC 3 cut(s) 59, 107, 266
Bsp19I CCATGG 1 cut(s) 33
BspLI GGNNCC 3 cut(s) 61, 82, 130
BspPI GGATC 3 cut(s) 54, 67, 102
BsrI ACTGG 2 cut(s) 148, 209
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 3 cut(s) 59, 107, 266
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 243
BstKTI GATC 3 cut(s) 62, 110, 269
BstMBI GATC 3 cut(s) 59, 107, 266
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 59, 107
BstYI RGATCY 2 cut(s) 59, 107
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 81
Csp6I GTAC 1 cut(s) 212
CviAII CATG 1 cut(s) 34
CviJI RGCY 1 cut(s) 20
CviKI_1 RGCY 1 cut(s) 20
CviQI GTAC 1 cut(s) 212
DpnI GATC 3 cut(s) 61, 109, 268
DpnII GATC 3 cut(s) 59, 107, 266
DraI TTTAAA 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 37
FaiI YATR 2 cut(s) 35, 181
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 21
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 21
FspBI CTAG 2 cut(s) 42, 87
GluI GCNGC 1 cut(s) 21
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 137
HphI GGTGA 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 84
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 146
HpyCH4V TGCA 2 cut(s) 12, 251
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 3 cut(s) 59, 107, 266
LpnPI CCDG 8 cut(s) 2, 39, 63, 129, 217, 222, 258, 261
Lsp1109I GCAGC 1 cut(s) 7
MaeI CTAG 2 cut(s) 42, 87
MalI GATC 3 cut(s) 61, 109, 268
MboI GATC 3 cut(s) 59, 107, 266
MboII GAAGA 2 cut(s) 16, 177
MflI RGATCY 2 cut(s) 59, 107
MhlI GDGCHC 1 cut(s) 33
MluCI AATT 2 cut(s) 73, 169
MnlI CCTC 4 cut(s) 199, 228, 252, 255
MroXI GAANNNNTTC 2 cut(s) 43, 156
MseI TTAA 2 cut(s) 114, 167
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NcoI CCATGG 1 cut(s) 33
NdeII GATC 3 cut(s) 59, 107, 266
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 3 cut(s) 61, 82, 130
PdmI GAANNNNTTC 2 cut(s) 43, 156
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 22
PshBI ATTAAT 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 3 cut(s) 61, 82, 130
PspPI GGNCC 1 cut(s) 81
PsuI RGATCY 2 cut(s) 59, 107
RsaI GTAC 1 cut(s) 213
RsaNI GTAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 114, 167
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 3 cut(s) 59, 107, 266
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 33
SetI ASST 1 cut(s) 11
SinI GGWCC 1 cut(s) 81
SmiI ATTTAAAT 1 cut(s) 168
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
SpeI ACTAGT 2 cut(s) 41, 86
Sse9I AATT 2 cut(s) 73, 169
SspMI CTAG 2 cut(s) 42, 87
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 33
SwaI ATTTAAAT 1 cut(s) 168
TasI AATT 2 cut(s) 73, 169
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 114, 167
Tru9I TTAA 2 cut(s) 114, 167
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 17, 165, 168
VpaK11BI GGWCC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 1 cut(s) 169
XmnI GAANNNNTTC 2 cut(s) 43, 156
XspI CTAG 2 cut(s) 42, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.