Rh6DG285100

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001434
Physical Location & Seq
Forward (+)
47983869 .. 47989412
5544 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG285100.1

Sequence Viewer

Length: 2253 bp
ATGATGACGGGGCCTTCGCCACCGTCCGATCAGTTCATGTCGCCGGCCGAAAGTCACCACTGCAGAAATGTGGTCGGCTTGATAGTAAGGAGAGAAATTTCTCCTCGAGCAAAACACTTGCCTAGAAGACGGTGGGGAGAAATTCCTAAAGTGAAAGCTGATTCCTCTTCCACTGGCCCTGAGTGCCAAGCAACAATAGATGCTAAGCGTGGCCTTCTTTCATGGGTTGAAGCAGAGTCACTACGGCATTTGTCAGCCAGGTACTGTAATTTGGTACCTCCTCCAAGGTCAACCATTGCAGCAGCATTTAGTCCTGATGGAAGAACGGTTGCTTCTACACATGGTGACCACACTGTGAAGATAATTGATTGCCAAACTGGAAGGTGCTTAAAGGTTTTGAGTGGCCATAGGAGGACACCCTGGGTGGTGAGATTCCACCCTTCGCAACCAGAAATAATTGCTAGTGGCGGTTTGGATCACGAAGTTCGCTTATGGGATCTAAACACTTCTGAGTGTATAGGATCACGTGATTTCCATCGACCTATTGCATCCATGGCTTTTCATGCGACAGGGGAACTCCTAGTTGTTGCATCAGGACACAAGGTGTATATATGGAACTACAAAAAGCAGCATTCGTCTCCAGACATTGTATTGAAAACATGGCGTTCACTTAGAGCAGTGCATTTTCACCCCCAAGCTGCTCCATTTCTTCTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTTGATGACACCAGCAACATCTTCCGGCTACTTACAATATCCTTCTCCTGCTGTTTTCTTGGCAAACGTTCATTCTAATGAACGCCTTAGTTTGGCTGCTGAACTGCCACATATGTCCTTGCCTTTCTTCTTTGTGTCACCATCTGTAGATAATCCAAGAAAAGAAATGCAGGGGGATGGGCATGTTGGTCCAAGTAACATGCAAGTCACTTCTGCTTTACATGAAGCAGTTGCAAATGCAACAGAGCGGAGTGATAGCACAGCTTCTCCCATGGAGGCATTTCCATCAGTTATATCTCTTACTCATCTCAATGATGCCATGGAGACTGATGAGATGCAGGCTATAGGGAGAAGCCAGCATGAAAACTTTACTAATGTAGATTCTGCTATTAATAGACTACCTGAAAATATTCCGAATCCTCTTCATTCTGCTGAACCTTGGCAACTTCGTCATATTTCTCCTTATAGAGATCCAGCATTTTGGGAGCTTCCTTTTCTCCAAGGGTGGTTAACGGGTCAAAGCCAAGCCACTTTTCCCTCGATGCTTCCTCTTAATGGTGCTGGGCTTGACACTTCAGCCCAACATAATGGTTCTTCTAATTTAGCACCACATGTGGCAACTTCTTTAGCAATGCGAGGAAGCACCAGCGTATCCAGGGTTTCTGAAAGCGCTGGTTTGCATTTTCGCTTCTCAGTACCAGAGTCTGGGGATGGTGCTGCTCTCTTAAATGCCCTGCATGATGGGAATGAAGCTCAGCCCATTATTAGCAGAATCCAGTCTGAAATTACTACATCACTGGCTGCTACAGCAGCTGCAGAGTTACCATGCACTGTGAAGCTAAGAATATGGTCACACGACATAAAAAATCCTTCTGCTCCACTCAATACTGAACGATGCCGCTTAACCATTCCCCATGCTGTTCTTTGCAGTGAAATGGGCACTCATTTCTCTCCTTGTGGGAGATTCTTAGCCGCCTGTGTTGCATGCATGGTTCCTGATATGGACGCTGAACCTGGATTACAAAGTGTAGTCCTTCAAGATTCTGGAATTGCAACATCCCCAACCCGGCATCCAATCTCAGCACATCAAGTCATTTATGAGCTTCGCATATATTCACTCGAGGAAGCAACATTTGGTTCAATACTCACGTCCCGGGCTATCAGAGCTGCACATTGTTTGACTTCGATCCAGTTCTCACCCACGTCTGAGCACATATTAATTGCCTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGCGAAACAACCGTACCTATTTACACTGTTCTTGAGGTCTACAGAGTTTCAGATATGGAACTTGTGAGAGTACTTCCTAGTGCAGATGATGAGGTTAATGTTGCTTGCTTTCATCCGTTTGCTGGGGGTGGTCTGGCTTATGGAACTAAGGAAGGGAAGCTTAGAGTCCTCCAGTTTGATAGTGCTCACAGTGGAAACTGCTTTACAGAGAAAAATATGGCTGCCCTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000045 GO:0000422 GO:0000423 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0005856 GO:0005929 GO:0005930 GO:0006914 GO:0006950 GO:0006996 GO:0007005 GO:0007033 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0009056 GO:0009790 GO:0009792 GO:0009888 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010506 GO:0010508 GO:0010562 GO:0010656 GO:0010660 GO:0010662 GO:0010664 GO:0010665 GO:0010667 GO:0010941 GO:0016043 GO:0016236 GO:0019216 GO:0019220 GO:0019222 GO:0019899 GO:0021915 GO:0022411 GO:0022607 GO:0030139 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031625 GO:0031982 GO:0032501 GO:0032502 GO:0032838 GO:0033554 GO:0033674 GO:0035295 GO:0042127 GO:0042325 GO:0042327 GO:0042981 GO:0042995 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043523 GO:0043524 GO:0043549 GO:0043550 GO:0043551 GO:0043552 GO:0044085 GO:0044093 GO:0044237 GO:0044248 GO:0044389 GO:0044422 GO:0044424 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0045335 GO:0045834 GO:0045937 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051020 GO:0051174 GO:0051338 GO:0051347 GO:0051716 GO:0060429 GO:0060548 GO:0061726 GO:0061912 GO:0061919 GO:0065007 GO:0065009 GO:0070925 GO:0071840 GO:0080090 GO:0090218 GO:0097014 GO:0097708 GO:0098780 GO:0099568 GO:0120025 GO:0120038 GO:1901214 GO:1901215 GO:1903008 GO:1903725 GO:1903727 GO:1905037
KEGG Pathways
Metabolic & Signaling
ko04137 ko04140 map04137 map04140
Pfam Domains
Protein Families
WD40

Protein Analysis

750

Amino Acids

81.77

Weight (kDa)

6.38

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WDR55 PF24796 100 - 210 1.4e-09 WDR55
Beta-prop_THOC3 PF25174 101 - 239 1.3e-20 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 101 - 213 3.2e-14 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 101 - 207 8.4e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 102 - 243 9.3e-22 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 102 - 216 5.9e-14 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 102 - 206 6.8e-11 WDHD1 first WD40 domain
EIF3I PF24805 102 - 198 9.4e-06 EIF3I
WD40_Prp19 PF24814 103 - 232 1.5e-12 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 104 - 211 2.3e-09 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 107 - 198 2e-06 WDR90/POC16, second beta-propeller
Beta-prop_EML_2 PF23414 141 - 231 1.2e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 274
AccB7I CCANNNNNTGG 1 cut(s) 1454
AccBSI CCGCTC 1 cut(s) 997
AccI GTMKAC 2 cut(s) 1981, 2058
AciI CCGC 4 cut(s) 468, 997, 1648, 1722
AclI AACGTT 1 cut(s) 816
AclWI GGATC 5 cut(s) 483, 504, 529, 1214, 1930
AcoI YGGCCR 2 cut(s) 45, 403
AcsI RAATTY 2 cut(s) 96, 141
AcuI CTGAAG 2 cut(s) 726, 1308
AcvI CACGTG 1 cut(s) 527
AcyI GRCGYC 1 cut(s) 1984
AdeI CACNNNGTG 3 cut(s) 344, 355, 604
AfaI GTAC 5 cut(s) 263, 276, 1446, 2034, 2091
AfeI AGCGCT 1 cut(s) 1420
AfiI CCNNNNNNNGG 5 cut(s) 841, 1304, 1454, 1815, 2141
AflIII ACRYGT 1 cut(s) 1360
AgsI TTSAA 4 cut(s) 230, 655, 1787, 1890
AjiI CACGTC 2 cut(s) 1899, 1953
AjnI CCWGG 5 cut(s) 257, 419, 1403, 1762, 2244
AjuI GAANNNNNNNTTGG 4 cut(s) 1266, 1298, 1866, 1898
Alw21I GWGCWC 2 cut(s) 1962, 2206
Alw26I GTCTC 2 cut(s) 642, 1067
AlwI GGATC 5 cut(s) 483, 504, 529, 1214, 1930
AlwNI CAGNNNCTG 3 cut(s) 264, 1454, 1562
Ama87I CYCGRG 3 cut(s) 105, 1868, 1902
Aor51HI AGCGCT 1 cut(s) 1420
AoxI GGCC 5 cut(s) 11, 45, 175, 211, 403
ApoI RAATTY 2 cut(s) 96, 141
ArsI GACNNNNNNTTYG 1 cut(s) 30
AseI ATTAAT 2 cut(s) 1140, 1967
Asp700I GAANNNNTTC 1 cut(s) 1158
Asp718I GGTACC 1 cut(s) 274
AspLEI GCGC 1 cut(s) 1421
AspS9I GGNCC 3 cut(s) 11, 176, 938
AsuC2I CCSGG 3 cut(s) 1816, 1903, 1904
AsuHPI GGTGA 6 cut(s) 47, 356, 439, 680, 879, 1938
AvaI CYCGRG 3 cut(s) 105, 1868, 1902
AvaII GGWCC 1 cut(s) 938
BaeGI GKGCMC 1 cut(s) 1691
BaeI ACNNNNGTAYC 4 cut(s) 1383, 1416, 2016, 2049
BalI TGGCCA 1 cut(s) 405
BanI GGYRCC 1 cut(s) 274
BbrPI CACGTG 1 cut(s) 527
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 2 cut(s) 1962, 2206
BbvCI CCTCAGC 1 cut(s) 720
BccI CCATC 8 cut(s) 311, 543, 898, 920, 1042, 1454, 1484, 2012
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 5 cut(s) 259, 421, 1405, 1764, 2246
BciVI GTATCC 1 cut(s) 1411
BcnI CCSGG 3 cut(s) 1816, 1903, 1904
BcoDI GTCTC 2 cut(s) 642, 1067
BfaI CTAG 4 cut(s) 123, 462, 581, 2097
BfmI CTRYAG 6 cut(s) 61, 894, 1092, 1554, 1563, 2059
BfoI RGCGCY 1 cut(s) 1422
BfuI GTATCC 1 cut(s) 1411
BlpI GCTNAGC 2 cut(s) 204, 1503
BmcAI AGTACT 1 cut(s) 2091
Bme1390I CCNGG 8 cut(s) 259, 421, 1405, 1764, 1816, 1903, 1904, 2246
Bme18I GGWCC 1 cut(s) 938
BmeT110I CYCGRG 3 cut(s) 105, 1868, 1902
BmgBI CACGTC 2 cut(s) 1899, 1953
BmgT120I GGNCC 3 cut(s) 11, 176, 938
BmiI GGNNCC 3 cut(s) 12, 276, 1743
BmrFI CCNGG 8 cut(s) 259, 421, 1405, 1764, 1816, 1903, 1904, 2246
BmsI GCATC 8 cut(s) 190, 557, 599, 1054, 1074, 1281, 1634, 1828
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 2 cut(s) 624, 2174
Bpu10I CCTNAGC 1 cut(s) 720
Bpu1102I GCTNAGC 2 cut(s) 204, 1503
BpuEI CTTGAG 1 cut(s) 2072
BpuMI CCSGG 3 cut(s) 1816, 1903, 1904
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 534
BsaHI GRCGYC 1 cut(s) 1984
BsaXI ACNNNNNCTCC 2 cut(s) 1000, 1030
Bsc4I CCNNNNNNNGG 5 cut(s) 841, 1304, 1454, 1815, 2141
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 6 cut(s) 178, 382, 1525, 1551, 1939, 2191
Bse3DI GCAATG 2 cut(s) 294, 1386
Bse8I GATNNNNATC 1 cut(s) 534
BseBI CCWGG 5 cut(s) 259, 421, 1405, 1764, 2246
BseGI GGATG 6 cut(s) 548, 931, 1465, 1805, 1819, 2131
BseJI GATNNNNATC 1 cut(s) 534
BseLI CCNNNNNNNGG 5 cut(s) 841, 1304, 1454, 1815, 2141
BseMI GCAATG 2 cut(s) 294, 1386
BseMII CTCAG 7 cut(s) 171, 501, 711, 1455, 1517, 1842, 1947
BseNI ACTGG 6 cut(s) 178, 382, 1525, 1551, 1939, 2191
BseRI GAGGAG 2 cut(s) 93, 270
BseSI GKGCMC 1 cut(s) 1691
BseX3I CGGCCG 1 cut(s) 45
BseYI CCCAGC 2 cut(s) 1310, 2141
BsgI GTGCAG 2 cut(s) 1902, 2121
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 5 cut(s) 13, 47, 177, 213, 405
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 2 cut(s) 1962, 2206
BsiHKCI CYCGRG 3 cut(s) 105, 1868, 1902
BsiSI CCGG 4 cut(s) 44, 774, 1816, 1903
BslFI GGGAC 1 cut(s) 1885
BslI CCNNNNNNNGG 5 cut(s) 841, 1304, 1454, 1815, 2141
BsmAI GTCTC 2 cut(s) 642, 1067
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 1885
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 5 cut(s) 13, 47, 177, 213, 405
BsoBI CYCGRG 3 cut(s) 105, 1868, 1902
Bsp1286I GDGCHC 3 cut(s) 1691, 1962, 2206
Bsp143I GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
Bsp1720I GCTNAGC 2 cut(s) 204, 1503
Bsp19I CCATGG 4 cut(s) 552, 1020, 1068, 1987
BspACI CCGC 4 cut(s) 468, 997, 1648, 1722
BspANI GGCC 5 cut(s) 13, 47, 177, 213, 405
BspCNI CTCAG 7 cut(s) 172, 502, 712, 1454, 1516, 1841, 1948
BspLI GGNNCC 3 cut(s) 12, 276, 1743
BspMAI CTGCAG 2 cut(s) 65, 1567
BspPI GGATC 5 cut(s) 483, 504, 529, 1214, 1930
BspT107I GGYRCC 1 cut(s) 274
BsrBI CCGCTC 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 294, 1386
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 6 cut(s) 178, 382, 1525, 1551, 1939, 2191
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
BssNI GRCGYC 1 cut(s) 1984
BssT1I CCWWGG 7 cut(s) 284, 552, 1020, 1068, 1187, 1249, 1987
Bst2UI CCWGG 5 cut(s) 259, 421, 1405, 1764, 2246
Bst4CI ACNGT 9 cut(s) 24, 132, 266, 328, 355, 1582, 2032, 2047, 2210
Bst6I CTCTTC 4 cut(s) 172, 745, 1176, 2001
BstACI GRCGYC 1 cut(s) 1984
BstBAI YACGTR 1 cut(s) 527
BstC8I GCNNGC 5 cut(s) 45, 1089, 1106, 1735, 2125
BstDSI CCRYGG 4 cut(s) 552, 1020, 1068, 1987
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 6 cut(s) 548, 931, 1465, 1805, 1819, 2131
BstH2I RGCGCY 1 cut(s) 1422
BstHHI GCGC 1 cut(s) 1421
BstKTI GATC 7 cut(s) 31, 478, 499, 524, 733, 1222, 1938
BstMAI GTCTC 2 cut(s) 642, 1067
BstMBI GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 7 cut(s) 183, 554, 563, 1556, 1559, 1730, 1913
BstNI CCWGG 5 cut(s) 259, 421, 1405, 1764, 2246
BstNSI RCATGY 4 cut(s) 935, 952, 1364, 1737
BstPI GGTNACC 1 cut(s) 344
BstSCI CCNGG 8 cut(s) 257, 419, 1403, 1762, 1814, 1901, 1902, 2244
BstSFI CTRYAG 6 cut(s) 61, 894, 1092, 1554, 1563, 2059
BstSLI GKGCMC 1 cut(s) 1691
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 2 cut(s) 496, 1219
BstXI CCANNNNNNTGG 2 cut(s) 1230, 1337
BstYI RGATCY 2 cut(s) 496, 1219
BstZI CGGCCG 1 cut(s) 45
BsuI GTATCC 1 cut(s) 1411
BsuRI GGCC 5 cut(s) 13, 47, 177, 213, 405
BtgI CCRYGG 4 cut(s) 552, 1020, 1068, 1987
BtrI CACGTC 2 cut(s) 1899, 1953
BtsCI GGATG 6 cut(s) 548, 931, 1465, 1805, 1819, 2131
BtsI GCAGTG 3 cut(s) 58, 684, 1684
BtsIMutI CAGTG 9 cut(s) 58, 171, 351, 684, 1544, 1578, 1684, 2043, 2215
Cac8I GCNNGC 5 cut(s) 45, 1089, 1106, 1735, 2125
CaiI CAGNNNCTG 3 cut(s) 264, 1454, 1562
CfoI GCGC 1 cut(s) 1421
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 11, 176, 938
Cfr9I CCCGGG 1 cut(s) 1902
CseI GACGC 2 cut(s) 1763, 1992
Csp6I GTAC 5 cut(s) 262, 275, 1445, 2033, 2090
CviQI GTAC 5 cut(s) 262, 275, 1445, 2033, 2090
DpnI GATC 7 cut(s) 30, 477, 498, 523, 732, 1221, 1937
DpnII GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
DraIII CACNNNGTG 3 cut(s) 344, 355, 604
EaeI YGGCCR 2 cut(s) 45, 403
EagI CGGCCG 1 cut(s) 45
Eam1104I CTCTTC 4 cut(s) 172, 745, 1176, 2001
EarI CTCTTC 4 cut(s) 172, 745, 1176, 2001
EclXI CGGCCG 1 cut(s) 45
Eco130I CCWWGG 7 cut(s) 284, 552, 1020, 1068, 1187, 1249, 1987
Eco47I GGWCC 1 cut(s) 938
Eco47III AGCGCT 1 cut(s) 1420
Eco52I CGGCCG 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 726, 1308
Eco72I CACGTG 1 cut(s) 527
Eco88I CYCGRG 3 cut(s) 105, 1868, 1902
Eco91I GGTNACC 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 11
EcoO65I GGTNACC 1 cut(s) 344
EcoRII CCWGG 5 cut(s) 257, 419, 1403, 1762, 2244
EcoT14I CCWWGG 7 cut(s) 284, 552, 1020, 1068, 1187, 1249, 1987
EcoT22I ATGCAT 1 cut(s) 1739
ErhI CCWWGG 7 cut(s) 284, 552, 1020, 1068, 1187, 1249, 1987
Esp3I CGTCTC 1 cut(s) 642
FalI AAGNNNNNCTT 2 cut(s) 2163, 2195
FaqI GGGAC 1 cut(s) 1885
FauNDI CATATG 1 cut(s) 861
FblI GTMKAC 2 cut(s) 1981, 2058
FokI GGATG 6 cut(s) 535, 938, 1472, 1792, 1806, 2118
FspBI CTAG 4 cut(s) 123, 462, 581, 2097
GlaI GCGC 1 cut(s) 1420
GsaI CCCAGC 2 cut(s) 1314, 2145
GsuI CTGGAG 2 cut(s) 624, 2174
HaeII RGCGCY 1 cut(s) 1422
HaeIII GGCC 5 cut(s) 13, 47, 177, 213, 405
HapII CCGG 4 cut(s) 44, 774, 1816, 1903
HgaI GACGC 2 cut(s) 1763, 1992
HhaI GCGC 1 cut(s) 1421
Hin1I GRCGYC 1 cut(s) 1984
Hin6I GCGC 1 cut(s) 1419
HinP1I GCGC 1 cut(s) 1419
HincII GTYRAC 3 cut(s) 291, 1260, 1982
HindII GTYRAC 3 cut(s) 291, 1260, 1982
HindIII AAGCTT 1 cut(s) 2177
HpaI GTTAAC 1 cut(s) 1260
HpaII CCGG 4 cut(s) 44, 774, 1816, 1903
HphI GGTGA 6 cut(s) 47, 356, 439, 680, 879, 1938
Hpy166II GTNNAC 5 cut(s) 291, 668, 1260, 1982, 2059
Hpy188I TCNGA 9 cut(s) 28, 511, 745, 1164, 1414, 1531, 1913, 1957, 2071
Hpy188III TCNNGA 9 cut(s) 314, 479, 594, 641, 734, 1745, 1787, 1794, 2051
Hpy8I GTNNAC 5 cut(s) 291, 668, 1260, 1982, 2059
Hpy99I CGWCG 1 cut(s) 1986
HpyAV CCTTC 8 cut(s) 24, 224, 375, 450, 801, 1629, 1793, 2165
HpyCH4III ACNGT 9 cut(s) 24, 132, 266, 328, 355, 1582, 2032, 2047, 2210
HpyCH4IV ACGT 4 cut(s) 526, 816, 1898, 1952
HpyF10VI GCNNNNNNNGC 7 cut(s) 183, 554, 563, 1556, 1559, 1730, 1913
HpySE526I ACGT 4 cut(s) 526, 816, 1898, 1952
Hsp92I GRCGYC 1 cut(s) 1984
HspAI GCGC 1 cut(s) 1419
KpnI GGTACC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
KspAI GTTAAC 1 cut(s) 1260
Kzo9I GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
LmnI GCTCC 3 cut(s) 706, 1234, 1630
LweI GCATC 8 cut(s) 190, 557, 599, 1054, 1074, 1281, 1634, 1828
MaeI CTAG 4 cut(s) 123, 462, 581, 2097
MaeII ACGT 4 cut(s) 526, 816, 1898, 1952
MaeIII GTNAC 8 cut(s) 53, 237, 344, 885, 944, 955, 1569, 1599
MalI GATC 7 cut(s) 30, 477, 498, 523, 732, 1221, 1937
MbiI CCGCTC 1 cut(s) 997
MboI GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
MflI RGATCY 2 cut(s) 496, 1219
MhlI GDGCHC 3 cut(s) 1691, 1962, 2206
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 9 cut(s) 96, 141, 268, 363, 456, 1348, 1533, 1797, 1968
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 4 cut(s) 245, 731, 1460, 2193
Mox20I TGGCCA 1 cut(s) 405
Mph1103I ATGCAT 1 cut(s) 1739
MroNI GCCGGC 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 1158
MscI TGGCCA 1 cut(s) 405
MseI TTAA 9 cut(s) 389, 1140, 1259, 1302, 1475, 1652, 1967, 2001, 2115
MslI CAYNNNNRTG 2 cut(s) 825, 1059
Msp20I TGGCCA 1 cut(s) 405
MspA1I CMGCKG 1 cut(s) 1562
MspI CCGG 4 cut(s) 44, 774, 1816, 1903
MspR9I CCNGG 8 cut(s) 259, 421, 1405, 1764, 1816, 1903, 1904, 2246
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 5 cut(s) 259, 421, 1405, 1764, 2246
MwoI GCNNNNNNNGC 7 cut(s) 183, 554, 563, 1556, 1559, 1730, 1913
NaeI GCCGGC 1 cut(s) 45
NciI CCSGG 3 cut(s) 1816, 1903, 1904
NcoI CCATGG 4 cut(s) 552, 1020, 1068, 1987
NdeI CATATG 1 cut(s) 861
NdeII GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
NgoMIV GCCGGC 1 cut(s) 43
NlaIV GGNNCC 3 cut(s) 12, 276, 1743
NmuCI GTSAC 6 cut(s) 53, 237, 344, 885, 955, 1599
NsiI ATGCAT 1 cut(s) 1739
NspI RCATGY 4 cut(s) 935, 952, 1364, 1737
PaeI GCATGC 1 cut(s) 1737
PaeR7I CTCGAG 2 cut(s) 105, 1868
PasI CCCWGGG 1 cut(s) 420
PciI ACATGT 1 cut(s) 1360
PctI GAATGC 1 cut(s) 631
PdiI GCCGGC 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 1158
PfeI GAWTC 8 cut(s) 161, 432, 746, 1130, 1165, 1521, 1713, 1790
PflMI CCANNNNNTGG 1 cut(s) 1454
PleI GAGTC 4 cut(s) 244, 731, 1459, 2192
PmaCI CACGTG 1 cut(s) 527
PmlI CACGTG 1 cut(s) 527
PpsI GAGTC 4 cut(s) 244, 731, 1459, 2192
Ppu21I YACGTR 1 cut(s) 527
PscI ACATGT 1 cut(s) 1360
PshBI ATTAAT 2 cut(s) 1140, 1967
Psp1406I AACGTT 1 cut(s) 816
Psp6I CCWGG 5 cut(s) 257, 419, 1403, 1762, 2244
PspCI CACGTG 1 cut(s) 527
PspEI GGTNACC 1 cut(s) 344
PspFI CCCAGC 2 cut(s) 1310, 2141
PspGI CCWGG 5 cut(s) 257, 419, 1403, 1762, 2244
PspN4I GGNNCC 3 cut(s) 12, 276, 1743
PspPI GGNCC 3 cut(s) 11, 176, 938
PspXI VCTCGAGB 2 cut(s) 105, 1868
PsrI GAACNNNNNNTAC 2 cut(s) 1752, 1784
PstI CTGCAG 2 cut(s) 65, 1567
PstNI CAGNNNCTG 3 cut(s) 264, 1454, 1562
PsuI RGATCY 2 cut(s) 496, 1219
PvuII CAGCTG 1 cut(s) 1562
RsaI GTAC 5 cut(s) 263, 276, 1446, 2034, 2091
RsaNI GTAC 5 cut(s) 262, 275, 1445, 2033, 2090
RseI CAYNNNNRTG 2 cut(s) 825, 1059
SalI GTCGAC 1 cut(s) 1980
SaqAI TTAA 9 cut(s) 389, 1140, 1259, 1302, 1475, 1652, 1967, 2001, 2115
Sau3AI GATC 7 cut(s) 28, 475, 496, 521, 730, 1219, 1935
Sau96I GGNCC 3 cut(s) 11, 176, 938
ScaI AGTACT 1 cut(s) 2091
SchI GAGTC 4 cut(s) 245, 731, 1460, 2193
ScrFI CCNGG 8 cut(s) 259, 421, 1405, 1764, 1816, 1903, 1904, 2246
SduI GDGCHC 3 cut(s) 1691, 1962, 2206
SfaNI GCATC 8 cut(s) 190, 557, 599, 1054, 1074, 1281, 1634, 1828
SfcI CTRYAG 6 cut(s) 61, 894, 1092, 1554, 1563, 2059
Sfr274I CTCGAG 2 cut(s) 105, 1868
SinI GGWCC 1 cut(s) 938
SlaI CTCGAG 2 cut(s) 105, 1868
SmaI CCCGGG 1 cut(s) 1904
SmiMI CAYNNNNRTG 2 cut(s) 825, 1059
SmlI CTYRAG 3 cut(s) 105, 1868, 2051
SmoI CTYRAG 3 cut(s) 105, 1868, 2051
SphI GCATGC 1 cut(s) 1737
Sse9I AATT 9 cut(s) 96, 141, 268, 363, 456, 1348, 1533, 1797, 1968
SsiI CCGC 4 cut(s) 468, 997, 1648, 1722
SspI AATATT 1 cut(s) 1159
SspMI CTAG 4 cut(s) 123, 462, 581, 2097
StyD4I CCNGG 8 cut(s) 257, 419, 1403, 1762, 1814, 1901, 1902, 2244
StyI CCWWGG 7 cut(s) 284, 552, 1020, 1068, 1187, 1249, 1987
TaaI ACNGT 9 cut(s) 24, 132, 266, 328, 355, 1582, 2032, 2047, 2210
TaiI ACGT 4 cut(s) 529, 819, 1901, 1955
TaqI TCGA 6 cut(s) 106, 538, 1289, 1869, 1934, 1981
TasI AATT 9 cut(s) 96, 141, 268, 363, 456, 1348, 1533, 1797, 1968
TatI WGTACW 1 cut(s) 2089
TauI GCSGC 2 cut(s) 1650, 1724
TfiI GAWTC 8 cut(s) 161, 432, 746, 1130, 1165, 1521, 1713, 1790
Tru1I TTAA 9 cut(s) 389, 1140, 1259, 1302, 1475, 1652, 1967, 2001, 2115
Tru9I TTAA 9 cut(s) 389, 1140, 1259, 1302, 1475, 1652, 1967, 2001, 2115
TscAI CASTG 9 cut(s) 65, 178, 358, 684, 1551, 1585, 1684, 2050, 2215
TseFI GTSAC 6 cut(s) 53, 237, 344, 885, 955, 1599
Tsp45I GTSAC 6 cut(s) 53, 237, 344, 885, 955, 1599
TspGWI ACGGA 1 cut(s) 2124
TspMI CCCGGG 1 cut(s) 1902
TspRI CASTG 9 cut(s) 65, 178, 358, 684, 1551, 1585, 1684, 2050, 2215
Van91I CCANNNNNTGG 1 cut(s) 1454
VpaK11BI GGWCC 1 cut(s) 938
VspI ATTAAT 2 cut(s) 1140, 1967
XapI RAATTY 2 cut(s) 96, 141
XceI RCATGY 4 cut(s) 935, 952, 1364, 1737
XhoI CTCGAG 2 cut(s) 105, 1868
XmaI CCCGGG 1 cut(s) 1902
XmiI GTMKAC 2 cut(s) 1981, 2058
XmnI GAANNNNTTC 1 cut(s) 1158
XspI CTAG 4 cut(s) 123, 462, 581, 2097
ZrmI AGTACT 1 cut(s) 2091
Zsp2I ATGCAT 1 cut(s) 1739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.