Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1128149 .. 1129689

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G04240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGATGAGTTTGTTAACCTCAAGGAAACAGAGCTGAGGCTGGGATTACCGGGAACAGATAATGTATGTGAAGCAAAAGAGAGAGTTTCTTGCTGTAATAACAACAATAAGAGAGTACTATCAACTGATACTGAGAAGGAGATTGAATCATCATCAAGGAAAACTGAAACATCCCCTCCTCGAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGATCTTACAGGAAGAACAACATTCAGAGTAAGAAGAATGAATCTGAGCATGAGGGTCAAGGAATCTATGTGAAAGTAAGTATGGATGGTGCACCATACTTGAGGAAAATAGATCTGAGTTGTTACAAAGGATACTCAGAGTTGCTTAAAGCTTTAGAAGTGATGTTCAAATTCTCTGTGGGAGAGTACTTTGAGAGAGATGGATATAAAGGTTCAGACTTTGTGCCTACTTATGAAGACAAAGATGGTGATTGGATGCTCATTGGTGATGTTCCATGGGAGATGTTCATATGTACGTGCAAGAGACTAAGGATCATGAAAGGATCAGAAGCCAAAGGTTTAGGCTGTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

189

Amino Acids

21.52

Weight (kDa)

6.63

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	109 - 286	4e-59	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	533, 544
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	3 cut(s)	117, 401, 508
AgsI	TTSAA	2 cut(s)	146, 382
AluBI	AGCT	2 cut(s)	34, 365
AluI	AGCT	2 cut(s)	34, 365
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	511
Alw44I	GTGCAC	1 cut(s)	303
AlwI	GGATC	2 cut(s)	533, 544
AoxI	GGCC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	383
AsuC2I	CCSGG	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	473, 491
BaeGI	GKGCMC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	1 cut(s)	307
BbvCI	CCTCAGC	1 cut(s)	35
BccI	CCATC	4 cut(s)	195, 293, 407, 452
BciVI	GTATCC	1 cut(s)	338
BcnI	CCSGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	511
BfuI	GTATCC	1 cut(s)	338
BglII	AGATCT	2 cut(s)	215, 325
BmcAI	AGTACT	2 cut(s)	117, 401
Bme1390I	CCNGG	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	2 cut(s)	5, 334
BpuMI	CCSGG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	488
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bse1I	ACTGG	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	5 cut(s)	10, 170, 206, 304, 474
BseMII	CTCAG	6 cut(s)	26, 123, 203, 249, 320, 363
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	168
BseSI	GKGCMC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	307
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	215, 325, 525, 536
Bsp19I	CCATGG	1 cut(s)	488
BspANI	GGCC	1 cut(s)	205
BspCNI	CTCAG	6 cut(s)	27, 124, 202, 250, 321, 362
BspHI	TCATGA	1 cut(s)	528
BspPI	GGATC	2 cut(s)	533, 544
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	4 cut(s)	215, 325, 525, 536
BssT1I	CCWWGG	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	510
BstDEI	CTNAG	7 cut(s)	35, 132, 189, 258, 329, 349, 521
BstDSI	CCRYGG	1 cut(s)	488
BstF5I	GGATG	5 cut(s)	10, 170, 206, 304, 474
BstKTI	GATC	4 cut(s)	218, 328, 528, 539
BstMAI	GTCTC	1 cut(s)	511
BstMBI	GATC	4 cut(s)	215, 325, 525, 536
BstSCI	CCNGG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	456
BstX2I	RGATCY	2 cut(s)	215, 325
BstYI	RGATCY	2 cut(s)	215, 325
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	205
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	5 cut(s)	10, 170, 206, 304, 474
CciI	TCATGA	1 cut(s)	528
Csp6I	GTAC	3 cut(s)	116, 400, 507
CviAII	CATG	3 cut(s)	263, 489, 529
CviJI	RGCY	7 cut(s)	34, 40, 188, 205, 365, 545, 558
CviKI_1	RGCY	7 cut(s)	34, 40, 188, 205, 365, 545, 558
CviQI	GTAC	3 cut(s)	116, 400, 507
DdeI	CTNAG	7 cut(s)	35, 132, 189, 258, 329, 349, 521
DpnI	GATC	4 cut(s)	217, 327, 527, 538
DpnII	GATC	4 cut(s)	215, 325, 525, 536
EaeI	YGGCCR	1 cut(s)	203
Eco130I	CCWWGG	1 cut(s)	488
EcoT14I	CCWWGG	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	3 cut(s)	266, 492, 532
FatI	CATG	3 cut(s)	262, 488, 528
FauNDI	CATATG	1 cut(s)	503
FokI	GGATG	5 cut(s)	17, 157, 213, 311, 481
GsaI	CCCAGC	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	266, 492, 532
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	3 cut(s)	146, 254, 276
HpaI	GTTAAC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	2 cut(s)	473, 491
Hpy166II	GTNNAC	2 cut(s)	16, 305
Hpy188I	TCNGA	7 cut(s)	192, 240, 259, 330, 352, 430, 541
Hpy188III	TCNNGA	1 cut(s)	529
Hpy8I	GTNNAC	2 cut(s)	16, 305
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	509
HpyCH4V	TGCA	2 cut(s)	305, 513
HpyF3I	CTNAG	7 cut(s)	35, 132, 189, 258, 329, 349, 521
HpySE526I	ACGT	1 cut(s)	509
Hsp92II	CATG	3 cut(s)	266, 492, 532
KspAI	GTTAAC	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	215, 325, 525, 536
LpnPI	CCDG	4 cut(s)	26, 63, 208, 222
LweI	GCATC	1 cut(s)	459
MaeII	ACGT	1 cut(s)	509
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	4 cut(s)	217, 327, 527, 538
MboI	GATC	4 cut(s)	215, 325, 525, 536
MboII	GAAGA	3 cut(s)	238, 259, 461
MflI	RGATCY	2 cut(s)	215, 325
MhlI	GDGCHC	1 cut(s)	307
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	1 cut(s)	383
MluNI	TGGCCA	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	6 cut(s)	29, 30, 186, 189, 259, 309
Mox20I	TGGCCA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	2 cut(s)	15, 360
Msp20I	TGGCCA	1 cut(s)	205
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	488
NdeI	CATATG	1 cut(s)	503
NdeII	GATC	4 cut(s)	215, 325, 525, 536
NlaIII	CATG	3 cut(s)	266, 492, 532
PagI	TCATGA	1 cut(s)	528
PfeI	GAWTC	3 cut(s)	146, 254, 276
Ppu21I	YACGTR	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	215, 325
RsaI	GTAC	3 cut(s)	117, 401, 508
RsaNI	GTAC	3 cut(s)	116, 400, 507
SaqAI	TTAA	2 cut(s)	15, 360
Sau3AI	GATC	4 cut(s)	215, 325, 525, 536
ScaI	AGTACT	2 cut(s)	117, 401
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	6 cut(s)	21, 36, 367, 427, 512, 553
SfaNI	GCATC	1 cut(s)	459
SmlI	CTYRAG	2 cut(s)	20, 313
SmoI	CTYRAG	2 cut(s)	20, 313
Sse9I	AATT	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	488
TaiI	ACGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	383
TatI	WGTACW	2 cut(s)	115, 399
TfiI	GAWTC	3 cut(s)	146, 254, 276
Tru1I	TTAA	2 cut(s)	15, 360
Tru9I	TTAA	2 cut(s)	15, 360
TspDTI	ATGAA	4 cut(s)	267, 462, 490, 545
VneI	GTGCAC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	383
ZrmI	AGTACT	2 cut(s)	117, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.