Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

17550179 .. 17551715

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAAAAGTTGATGTTTATGATGAGCTTGTTAACCTAAAGGCAACAGAGCTGAGATTGGGATTACCAGGGACAGAAGAAACTGTTTCTTGTGGAAAAAGCAACAAAAGAGTTTTACCTGAAGCTACTGAGAAAGAGATTGAATCCACTGGAAAAACTGAAACCGCTTCTCCTCCAAAGGCTCAGATTGTTGGATGGCCACCAGTTAGATCTTACAGAAAGAACAATGTTCAGACAAAGAAGAGTGAATCTGAAGGTCAAGGAAACTATGTGAAAGTAAGTATGGATGGTGCTCCATATCTAAGGAAGATAGATCTAACGATGTATAAACAATATCCAGAGTTGATGAAATCACTTGAAAACATGTTTAAATTCTCTGTGGGAGAATATTTTGAGAGAGAAGGATATAAAGGCTCAGACTTTGTACCTACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCTTGGGAGATGTTTGTTTCGTCTTGTAAGAGGCTAAGGATCATGAAAGGATCTGAAGTTAAAGGTTTAGGTTGTGGTGGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

186

Amino Acids

20.97

Weight (kDa)

5.78

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	16 - 182	6.7e-56	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	521, 532
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	3 cut(s)	141, 273, 549
AfaI	GTAC	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	2 cut(s)	143, 359
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	3 cut(s)	28, 52, 125
AluI	AGCT	3 cut(s)	28, 52, 125
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	521, 532
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	461, 479
BalI	TGGCCA	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	3 cut(s)	189, 281, 440
BciT130I	CCWGG	1 cut(s)	69
BglII	AGATCT	2 cut(s)	209, 313
Bme1390I	CCNGG	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	68, 476
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse1I	ACTGG	2 cut(s)	154, 203
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	68, 476
BseGI	GGATG	3 cut(s)	200, 292, 462
BseMII	CTCAG	4 cut(s)	44, 120, 197, 429
BseNI	ACTGG	2 cut(s)	154, 203
BseRI	GAGGAG	1 cut(s)	162
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	295
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	209, 313, 513, 524
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	4 cut(s)	45, 121, 196, 428
BspHI	TCATGA	1 cut(s)	516
BspPI	GGATC	2 cut(s)	521, 532
BsrI	ACTGG	2 cut(s)	154, 203
BssECI	CCNNGG	2 cut(s)	68, 476
BssMI	GATC	4 cut(s)	209, 313, 513, 524
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	236
BstDEI	CTNAG	6 cut(s)	53, 129, 183, 302, 415, 509
BstF5I	GGATG	3 cut(s)	200, 292, 462
BstKTI	GATC	4 cut(s)	212, 316, 516, 527
BstMBI	GATC	4 cut(s)	209, 313, 513, 524
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	444
BstX2I	RGATCY	3 cut(s)	209, 313, 524
BstYI	RGATCY	3 cut(s)	209, 313, 524
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	200, 292, 462
BtsIMutI	CAGTG	1 cut(s)	147
CciI	TCATGA	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	2 cut(s)	364, 517
CviJI	RGCY	7 cut(s)	28, 52, 125, 182, 199, 414, 508
CviKI_1	RGCY	7 cut(s)	28, 52, 125, 182, 199, 414, 508
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	6 cut(s)	53, 129, 183, 302, 415, 509
DpnI	GATC	4 cut(s)	211, 315, 515, 526
DpnII	GATC	4 cut(s)	209, 313, 513, 524
DraI	TTTAAA	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	197
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	476
Eco57I	CTGAAG	3 cut(s)	141, 273, 549
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	2 cut(s)	367, 520
FaiI	YATR	9 cut(s)	21, 270, 284, 298, 327, 365, 408, 435, 518
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	363, 516
FokI	GGATG	3 cut(s)	207, 299, 469
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	367, 520
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	143, 248
HpaI	GTTAAC	1 cut(s)	34
HphI	GGTGA	2 cut(s)	461, 479
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	186, 234, 253, 418, 529
Hpy188III	TCNNGA	2 cut(s)	338, 517
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	248, 395
HpyCH4III	ACNGT	1 cut(s)	85
HpyF3I	CTNAG	6 cut(s)	53, 129, 183, 302, 415, 509
Hsp92II	CATG	2 cut(s)	367, 520
KspAI	GTTAAC	1 cut(s)	34
Kzo9I	GATC	4 cut(s)	209, 313, 513, 524
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	54, 81, 132, 135, 216, 351
LweI	GCATC	1 cut(s)	447
MalI	GATC	4 cut(s)	211, 315, 515, 526
MboI	GATC	4 cut(s)	209, 313, 513, 524
MboII	GAAGA	4 cut(s)	89, 253, 319, 449
MflI	RGATCY	3 cut(s)	209, 313, 524
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	199
MluCI	AATT	1 cut(s)	371
MluNI	TGGCCA	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	183, 498
Mox20I	TGGCCA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	199
MseI	TTAA	4 cut(s)	33, 369, 534, 559
Msp20I	TGGCCA	1 cut(s)	199
MspR9I	CCNGG	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	209, 313, 513, 524
NlaIII	CATG	2 cut(s)	367, 520
NspI	RCATGY	1 cut(s)	367
PagI	TCATGA	1 cut(s)	516
PciI	ACATGT	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	143, 248
PscI	ACATGT	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	67
PsuI	RGATCY	3 cut(s)	209, 313, 524
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	4 cut(s)	33, 369, 534, 559
Sau3AI	GATC	4 cut(s)	209, 313, 513, 524
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	9 cut(s)	30, 39, 54, 121, 127, 259, 430, 541, 547
SfaNI	GCATC	1 cut(s)	447
Sse9I	AATT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	165
SspI	AATATT	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	85
TasI	AATT	1 cut(s)	371
TfiI	GAWTC	2 cut(s)	143, 248
Tru1I	TTAA	4 cut(s)	33, 369, 534, 559
Tru9I	TTAA	4 cut(s)	33, 369, 534, 559
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	362, 450, 533
TspRI	CASTG	1 cut(s)	154
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.