Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

19099027 .. 19102542

Gene Structure 3516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1206500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAGGCAAGGCACATGAGAATGATCTCAACCTCAAGGCAACAGAGCTGACACTAGGGTTGCCAGGGAGAGATGAAACTAGTGAGCTTCCTAATCAAACCAAGAAGAGATCACTGCCAGCTGATTTAAAAAATGAAGAAGGAAACCCTGATGCTAAAAATGCTCAAAAGGAAACTGCTCCTTCTGCAAAGGCACAAATAGTGGGGTGGCCACCAATCAGATCTTATAGGAAGAACAGCCTCCAGGTAAATAAGAATACTGAGCCTGAAACTGCTGCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACCTTAGGGTTTACAAATGCTACCCAGAACTCCTCAAGGCCTTAGAAGTCATGTTTAAGTTTACTATAGGCCAATACTCAGAGAGGGAAGGCTACAAGGGATCAGAATATGCACCTACTTATGAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGATATGTTCATGTCATCCTGCAAGAAGTTGAGAATCATGAAAGGGTCAGAAGCCAGAGGCTTGGGGTGTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

192

Amino Acids

21.39

Weight (kDa)

7.61

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	14 - 188	5.1e-60	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	439
AcoI	YGGCCR	1 cut(s)	209
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	64, 243
AluBI	AGCT	3 cut(s)	49, 88, 122
AluI	AGCT	3 cut(s)	49, 88, 122
Alw21I	GWGCWC	1 cut(s)	313
AlwI	GGATC	1 cut(s)	439
AoxI	GGCC	3 cut(s)	209, 369, 400
ApeKI	GCWGC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	479
AxyI	CCTNAGG	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	299, 458
BciT130I	CCWGG	2 cut(s)	66, 245
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	2 cut(s)	56, 81
BfmI	CTRYAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	66, 245
BmrFI	CCNGG	2 cut(s)	66, 245
BmsI	GCATC	2 cut(s)	142, 465
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	20, 350
BsaJI	CCNNGG	2 cut(s)	65, 494
Bse21I	CCTNAGG	1 cut(s)	335
BseBI	CCWGG	2 cut(s)	66, 245
BseDI	CCNNGG	2 cut(s)	65, 494
BseGI	GGATG	3 cut(s)	310, 480, 512
BseMII	CTCAG	3 cut(s)	252, 334, 423
BseRI	GAGGAG	1 cut(s)	353
BseXI	GCAGC	1 cut(s)	262
BseYI	CCCAGC	1 cut(s)	278
BshFI	GGCC	3 cut(s)	211, 371, 402
BsiHKAI	GWGCWC	1 cut(s)	313
BsnI	GGCC	3 cut(s)	211, 371, 402
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	4 cut(s)	25, 110, 221, 431
Bsp19I	CCATGG	1 cut(s)	494
BspANI	GGCC	3 cut(s)	211, 371, 402
BspCNI	CTCAG	3 cut(s)	253, 333, 422
BspHI	TCATGA	1 cut(s)	534
BspPI	GGATC	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	65, 494
BssMI	GATC	4 cut(s)	25, 110, 221, 431
BssT1I	CCWWGG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	66, 245
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	5 cut(s)	261, 320, 335, 373, 409
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	3 cut(s)	310, 480, 512
BstKTI	GATC	4 cut(s)	28, 113, 224, 434
BstMBI	GATC	4 cut(s)	25, 110, 221, 431
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 185
BstNI	CCWGG	2 cut(s)	66, 245
BstSCI	CCNGG	2 cut(s)	64, 243
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	221
BstXI	CCANNNNNNTGG	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	3 cut(s)	211, 371, 402
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	3 cut(s)	310, 480, 512
BtsI	GCAGTG	1 cut(s)	113
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	534
CviAII	CATG	6 cut(s)	17, 301, 382, 495, 508, 535
DdeI	CTNAG	5 cut(s)	261, 320, 335, 373, 409
DpnI	GATC	4 cut(s)	27, 112, 223, 433
DpnII	GATC	4 cut(s)	25, 110, 221, 431
DraI	TTTAAA	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	494
Eco147I	AGGCCT	1 cut(s)	371
Eco81I	CCTNAGG	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	64, 243
EcoT14I	CCWWGG	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	494
FaeI	CATG	6 cut(s)	20, 304, 385, 498, 511, 538
FatI	CATG	6 cut(s)	16, 300, 381, 494, 507, 534
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	3 cut(s)	317, 487, 499
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	2 cut(s)	56, 81
GluI	GCNGC	1 cut(s)	276
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	1 cut(s)	227
HaeIII	GGCC	3 cut(s)	211, 371, 402
Hin1II	CATG	6 cut(s)	20, 304, 385, 498, 511, 538
HinfI	GANTC	1 cut(s)	531
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	2 cut(s)	343, 393
Hpy188I	TCNGA	5 cut(s)	221, 323, 412, 436, 547
Hpy188III	TCNNGA	1 cut(s)	535
Hpy8I	GTNNAC	2 cut(s)	343, 393
HpyAV	CCTTC	3 cut(s)	134, 192, 413
HpyCH4V	TGCA	3 cut(s)	188, 443, 519
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 185
HpyF3I	CTNAG	5 cut(s)	261, 320, 335, 373, 409
Hsp92II	CATG	6 cut(s)	20, 304, 385, 498, 511, 538
Kzo9I	GATC	4 cut(s)	25, 110, 221, 431
LmnI	GCTCC	2 cut(s)	184, 308
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	142, 465
MaeI	CTAG	2 cut(s)	56, 81
MalI	GATC	4 cut(s)	27, 112, 223, 433
MboI	GATC	4 cut(s)	25, 110, 221, 431
MboII	GAAGA	3 cut(s)	118, 149, 244
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	313
MlsI	TGGCCA	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	7 cut(s)	44, 251, 329, 374, 408, 448, 548
Mox20I	TGGCCA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	2 cut(s)	128, 387
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	211
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	66, 245
MvaI	CCWGG	2 cut(s)	66, 245
MwoI	GCNNNNNNNGC	2 cut(s)	161, 185
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	4 cut(s)	25, 110, 221, 431
NlaIII	CATG	6 cut(s)	20, 304, 385, 498, 511, 538
PagI	TCATGA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	64, 243
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	2 cut(s)	64, 243
PsuI	RGATCY	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	122
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	128, 387
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	4 cut(s)	25, 110, 221, 431
ScrFI	CCNGG	2 cut(s)	66, 245
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	9 cut(s)	36, 51, 90, 124, 249, 316, 321, 336, 448
SfaNI	GCATC	2 cut(s)	142, 465
SfcI	CTRYAG	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	2 cut(s)	35, 365
SmoI	CTYRAG	2 cut(s)	35, 365
SpeI	ACTAGT	1 cut(s)	80
SseBI	AGGCCT	1 cut(s)	371
SspMI	CTAG	2 cut(s)	56, 81
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	2 cut(s)	64, 243
StyI	CCWWGG	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	531
Tru1I	TTAA	2 cut(s)	128, 387
Tru9I	TTAA	2 cut(s)	128, 387
TscAI	CASTG	1 cut(s)	120
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	4 cut(s)	90, 150, 496, 551
TspRI	CASTG	1 cut(s)	120
XspI	CTAG	2 cut(s)	56, 81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.