Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

31336165 .. 31337389

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1241700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAATGTTTGCGCAGGATCTTGAAGCCACAGAGCTAAGATTAGGGTTACCGGGCACCAAGGATTCCGAGCAGAACACATATTCTACTACTTTGATTAGCAAGAGCAACAAAAGACCACTGCAACCCGACATGAACGACGAAGACAATGATTCTTCATCCGCCAAAAGATCCGACCAGCAAATTTCTCAGCCTCCACCTTCCAAGGCACAAGTAGTAGGGTGGCCGCCGGTGAGATCATACCGGAAAACCTGCCTCCAAGCGAAGAAAACCGAGGCGGAGGCAGCCGGGATTTATGTCAAGATAAGCATGGATGGAGCTCCTTATCTAAGAAAGATAGATTTGAAGGTGTACAGAGGGTATACTGAACTGCTTAAAGCGTTGGAAGACATGTTCAAGTTCAAAGTTGGTGATTATTGTGAGAAGGATTTAGGGTACAATAACAGATCAGAATTTGTACCTACTTATGAAGACAGAGATGGAGATTGGATGCTGCTTGGAGATGTTCCGTGGGAGATGTTCATCGCCTCGTGCAAGAGGTTGAGAATCATGAAGGGTTCGGAAGCGAAAGGCTTAGGCTGCTGCCCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

198

Amino Acids

22.27

Weight (kDa)

6.4

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	10 - 193	1.9e-60	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	260
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	362
AciI	CCGC	4 cut(s)	162, 227, 278, 587
AclWI	GGATC	2 cut(s)	27, 165
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	183, 452
AfaI	GTAC	3 cut(s)	353, 437, 459
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	26, 346, 397, 403
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	37, 320
AluI	AGCT	2 cut(s)	37, 320
Alw21I	GWGCWC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	27, 165
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	4 cut(s)	284, 493, 579, 582
ApoI	RAATTY	2 cut(s)	183, 452
AspLEI	GCGC	1 cut(s)	16
AsuC2I	CCSGG	2 cut(s)	54, 289
AsuHPI	GGTGA	2 cut(s)	244, 422
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	529
BbsI	GAAGAC	3 cut(s)	150, 393, 477
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	296, 480, 566, 569
BccI	CCATC	2 cut(s)	308, 473
BcnI	CCSGG	2 cut(s)	54, 289
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
BlsI	GCNGC	5 cut(s)	228, 286, 495, 581, 584
Bme1390I	CCNGG	2 cut(s)	54, 289
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	54, 289
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	3 cut(s)	150, 393, 477
Bpu10I	CCTNAGC	1 cut(s)	574
BpuMI	CCSGG	2 cut(s)	54, 289
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	4 cut(s)	60, 204, 273, 509
BsaWI	WCCGGW	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	521
BseDI	CCNNGG	4 cut(s)	60, 204, 273, 509
BseGI	GGATG	3 cut(s)	158, 319, 495
BseJI	GATNNNNATC	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	203
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	4 cut(s)	296, 480, 566, 569
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	53, 230, 244, 288
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	2 cut(s)	59, 322
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	19, 170, 236, 446
BspACI	CCGC	4 cut(s)	162, 227, 278, 587
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	202
BspHI	TCATGA	1 cut(s)	549
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	260
BspPI	GGATC	2 cut(s)	27, 165
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	589
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	4 cut(s)	60, 204, 273, 509
BssMI	GATC	4 cut(s)	19, 170, 236, 446
BssNAI	GTATAC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	2 cut(s)	60, 204
Bst1107I	GTATAC	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	529
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	38, 189, 329, 574
BstDSI	CCRYGG	1 cut(s)	509
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	158, 319, 495
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	22, 173, 239, 449
BstMBI	GATC	4 cut(s)	19, 170, 236, 446
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 284, 579
BstNSI	RCATGY	1 cut(s)	394
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	52, 287
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	296, 480, 566, 569
BstV2I	GAAGAC	3 cut(s)	150, 393, 477
BstX2I	RGATCY	2 cut(s)	19, 170
BstYI	RGATCY	2 cut(s)	19, 170
BstZ17I	GTATAC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	1 cut(s)	509
BtgZI	GCGATG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	158, 319, 495
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	587
CciI	TCATGA	1 cut(s)	549
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	352, 436, 458
CviAII	CATG	4 cut(s)	133, 310, 391, 550
CviJI	RGCY	8 cut(s)	29, 37, 193, 226, 287, 320, 573, 579
CviKI_1	RGCY	8 cut(s)	29, 37, 193, 226, 287, 320, 573, 579
CviQI	GTAC	3 cut(s)	352, 436, 458
DdeI	CTNAG	4 cut(s)	38, 189, 329, 574
DpnI	GATC	4 cut(s)	21, 172, 238, 448
DpnII	GATC	4 cut(s)	19, 170, 236, 446
EaeI	YGGCCR	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	151, 293
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	60, 204
Eco24I	GRGCYC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	48
EcoT14I	CCWWGG	2 cut(s)	60, 204
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	60, 204
FaeI	CATG	4 cut(s)	136, 313, 394, 553
FaiI	YATR	9 cut(s)	82, 134, 241, 297, 311, 363, 392, 468, 551
FatI	CATG	4 cut(s)	132, 309, 390, 549
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
FokI	GGATG	3 cut(s)	145, 326, 502
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	4 cut(s)	53, 230, 244, 288
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	136, 313, 394, 553
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	65, 152, 546
HpaII	CCGG	4 cut(s)	53, 230, 244, 288
HphI	GGTGA	2 cut(s)	244, 422
Hpy166II	GTNNAC	2 cut(s)	352, 363
Hpy188I	TCNGA	5 cut(s)	70, 175, 451, 562, 593
Hpy188III	TCNNGA	3 cut(s)	23, 301, 550
Hpy8I	GTNNAC	2 cut(s)	352, 363
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	210, 340, 418, 547
HpyCH4V	TGCA	2 cut(s)	124, 534
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 284, 579
HpyF3I	CTNAG	4 cut(s)	38, 189, 329, 574
Hsp92II	CATG	4 cut(s)	136, 313, 394, 553
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	4 cut(s)	19, 170, 236, 446
LmnI	GCTCC	2 cut(s)	317, 325
LpnPI	CCDG	7 cut(s)	2, 66, 191, 243, 257, 265, 301
Lsp1109I	GCAGC	4 cut(s)	296, 480, 566, 569
LweI	GCATC	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	4 cut(s)	21, 172, 238, 448
MbiI	CCGCTC	1 cut(s)	589
MboI	GATC	4 cut(s)	19, 170, 236, 446
MboII	GAAGA	5 cut(s)	147, 155, 277, 398, 482
MflI	RGATCY	2 cut(s)	19, 170
MhlI	GDGCHC	2 cut(s)	59, 322
MluCI	AATT	2 cut(s)	183, 452
MmeI	TCCRAC	2 cut(s)	198, 363
MnlI	CCTC	7 cut(s)	204, 266, 268, 274, 350, 531, 538
MseI	TTAA	1 cut(s)	375
MspI	CCGG	4 cut(s)	53, 230, 244, 288
MspR9I	CCNGG	2 cut(s)	54, 289
MwoI	GCNNNNNNNGC	3 cut(s)	11, 284, 579
NciI	CCSGG	2 cut(s)	54, 289
NdeII	GATC	4 cut(s)	19, 170, 236, 446
NlaIII	CATG	4 cut(s)	136, 313, 394, 553
NlaIV	GGNNCC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	394
PagI	TCATGA	1 cut(s)	549
PciI	ACATGT	1 cut(s)	390
PfeI	GAWTC	3 cut(s)	65, 152, 546
PkrI	GCNGC	5 cut(s)	228, 286, 495, 581, 584
PscI	ACATGT	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	322
PspEI	GGTNACC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	19, 170
RsaI	GTAC	3 cut(s)	353, 437, 459
RsaNI	GTAC	3 cut(s)	352, 436, 458
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
Sau3AI	GATC	4 cut(s)	19, 170, 236, 446
ScrFI	CCNGG	2 cut(s)	54, 289
SduI	GDGCHC	2 cut(s)	59, 322
SetI	ASST	7 cut(s)	39, 202, 254, 322, 351, 463, 542
SfaNI	GCATC	1 cut(s)	480
SgrAI	CRCCGGYG	1 cut(s)	229
Sse9I	AATT	2 cut(s)	183, 452
SsiI	CCGC	4 cut(s)	162, 227, 278, 587
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	52, 287
StyI	CCWWGG	2 cut(s)	60, 204
TasI	AATT	2 cut(s)	183, 452
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	3 cut(s)	65, 152, 546
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	4 cut(s)	284, 493, 579, 582
TspDTI	ATGAA	5 cut(s)	147, 149, 483, 511, 566
TspGWI	ACGGA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	183, 452
XceI	RCATGY	1 cut(s)	394
XmiI	GTMKAC	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.