Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

30478283 .. 30479519

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1225000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCAATGTTTGCGCAGGATCTTGAAGCCACGGAGCTAAGATTAGGGTTACCAGGCACCAATGATTCCGAGCAGAACACCTCTTCTCCTACTTTGGTTAGCAAGAGTAACAAAAGACCACTGCAATCCGACATGAACGAAGACAATGATTCTTCACCCGCCAACAGATCCGACGAGCAAATTTCTCAGCCTCCACCTACCAAGACACAAGTAGTAGGGTGGCCGCCGGTGAGATCATACTGGAAAAACTGCCTCCAATCGAAGAAAACCGAGGCGGAGGCAGCCGGCATCTACGTGAAGATAAGCATGGATGGAGCTCCTTATCTAAGAAAGATTGATTTGAAGGTGTACAGAGGATATCCTGAGCTGCTTAAAGCATTGGAAGACATGTTCAAGTTCAAGGTTGGTGATTACTGTGAGAAGAAATTAGGGTATAATAACCGATCAGAATTTGTGCCTACTTATGAAGACAAAGATGGAGATTGGATGCTACTTGGAGATGTTCCATGGGAGATGTTCATCGTTTCGTGCAAGAGGTTGAGAATCATGAAAGGTTCGGAAGCGAAAGGGTTAGGCTGCTGCACGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

197

Amino Acids

22.13

Weight (kDa)

5.7

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	10 - 192	1.3e-59	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	56
AciI	CCGC	3 cut(s)	159, 224, 275
AclWI	GGATC	2 cut(s)	27, 162
AcoI	YGGCCR	1 cut(s)	221
AcsI	RAATTY	2 cut(s)	180, 449
AdeI	CACNNNGTG	1 cut(s)	588
AfaI	GTAC	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	26, 343, 394, 400
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	3 cut(s)	37, 317, 367
AluI	AGCT	3 cut(s)	37, 317, 367
Alw21I	GWGCWC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	27, 162
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	4 cut(s)	281, 367, 576, 579
ApoI	RAATTY	2 cut(s)	180, 449
AspLEI	GCGC	1 cut(s)	16
AsuHPI	GGTGA	3 cut(s)	147, 241, 419
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	3 cut(s)	147, 390, 474
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	293, 354, 563, 566
BccI	CCATC	2 cut(s)	305, 470
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	1 cut(s)	54
BisI	GCNGC	5 cut(s)	224, 282, 368, 577, 580
BlsI	GCNGC	5 cut(s)	225, 283, 369, 578, 581
Bme1390I	CCNGG	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	54
BmsI	GCATC	2 cut(s)	297, 477
BpiI	GAAGAC	3 cut(s)	147, 390, 474
Bpu10I	CCTNAGC	1 cut(s)	363
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	518
BsaJI	CCNNGG	3 cut(s)	30, 270, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bse118I	RCCGGY	2 cut(s)	226, 284
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	518
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	3 cut(s)	30, 270, 506
BseGI	GGATG	2 cut(s)	316, 492
BseJI	GATNNNNATC	1 cut(s)	518
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	200, 354
BseNI	ACTGG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	293, 354, 563, 566
BsgI	GTGCAG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	227, 285
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	19, 167, 233, 443
Bsp19I	CCATGG	1 cut(s)	506
BspACI	CCGC	3 cut(s)	159, 224, 275
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	2 cut(s)	199, 355
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	27, 162
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	12
BsrFI	RCCGGY	2 cut(s)	226, 284
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	2 cut(s)	226, 284
BssECI	CCNNGG	3 cut(s)	30, 270, 506
BssMI	GATC	4 cut(s)	19, 167, 233, 443
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	416
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	2 cut(s)	286, 584
BstDEI	CTNAG	4 cut(s)	38, 186, 326, 363
BstDSI	CCRYGG	2 cut(s)	30, 506
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	2 cut(s)	316, 492
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	4 cut(s)	22, 170, 236, 446
BstMBI	GATC	4 cut(s)	19, 167, 233, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 281
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	391
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	52
BstV1I	GCAGC	4 cut(s)	293, 354, 563, 566
BstV2I	GAAGAC	3 cut(s)	147, 390, 474
BstX2I	RGATCY	2 cut(s)	19, 167
BstYI	RGATCY	2 cut(s)	19, 167
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	2 cut(s)	30, 506
BtsCI	GGATG	2 cut(s)	316, 492
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	286, 584
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	2 cut(s)	226, 284
Csp6I	GTAC	1 cut(s)	349
CviAII	CATG	5 cut(s)	133, 307, 388, 507, 547
CviJI	RGCY	8 cut(s)	29, 37, 190, 223, 284, 317, 367, 576
CviKI_1	RGCY	8 cut(s)	29, 37, 190, 223, 284, 317, 367, 576
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	4 cut(s)	38, 186, 326, 363
DpnI	GATC	4 cut(s)	21, 169, 235, 445
DpnII	GATC	4 cut(s)	19, 167, 233, 443
DraIII	CACNNNGTG	1 cut(s)	588
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	506
Eco24I	GRGCYC	1 cut(s)	319
Eco32I	GATATC	1 cut(s)	359
Eco53kI	GAGCTC	1 cut(s)	317
Eco91I	GGTNACC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	52
EcoRV	GATATC	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	5 cut(s)	136, 310, 391, 510, 550
FaiI	YATR	8 cut(s)	134, 238, 308, 389, 435, 465, 508, 548
FatI	CATG	5 cut(s)	132, 306, 387, 506, 546
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	5 cut(s)	224, 282, 368, 577, 580
FokI	GGATG	2 cut(s)	323, 499
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	5 cut(s)	224, 282, 368, 577, 580
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	5 cut(s)	224, 282, 368, 577, 580
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	2 cut(s)	227, 285
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	5 cut(s)	136, 310, 391, 510, 550
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HinfI	GANTC	3 cut(s)	65, 149, 543
HpaII	CCGG	2 cut(s)	227, 285
HphI	GGTGA	3 cut(s)	147, 241, 419
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	5 cut(s)	70, 130, 172, 448, 559
Hpy188III	TCNNGA	3 cut(s)	23, 362, 547
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	416
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	124, 531, 582
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 281
HpyF3I	CTNAG	4 cut(s)	38, 186, 326, 363
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	5 cut(s)	136, 310, 391, 510, 550
HspAI	GCGC	1 cut(s)	14
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	19, 167, 233, 443
LmnI	GCTCC	3 cut(s)	34, 314, 322
LpnPI	CCDG	7 cut(s)	2, 39, 66, 226, 240, 298, 375
Lsp1109I	GCAGC	4 cut(s)	293, 354, 563, 566
LweI	GCATC	2 cut(s)	297, 477
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	48, 107
MalI	GATC	4 cut(s)	21, 169, 235, 445
MboI	GATC	4 cut(s)	19, 167, 233, 443
MboII	GAAGA	8 cut(s)	75, 144, 152, 274, 310, 395, 433, 479
MflI	RGATCY	2 cut(s)	19, 167
MhlI	GDGCHC	1 cut(s)	319
MluCI	AATT	3 cut(s)	180, 425, 449
MmeI	TCCRAC	2 cut(s)	153, 195
MnlI	CCTC	7 cut(s)	91, 201, 263, 265, 271, 347, 528
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	293
MspI	CCGG	2 cut(s)	227, 285
MspR9I	CCNGG	1 cut(s)	54
MvaI	CCWGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	11, 281
NaeI	GCCGGC	1 cut(s)	286
NcoI	CCATGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	19, 167, 233, 443
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	5 cut(s)	136, 310, 391, 510, 550
NlaIV	GGNNCC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	391
PagI	TCATGA	1 cut(s)	546
PciI	ACATGT	1 cut(s)	387
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	3 cut(s)	65, 149, 543
PkrI	GCNGC	5 cut(s)	225, 283, 369, 578, 581
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	19, 167
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	5 cut(s)	224, 282, 368, 577, 580
Sau3AI	GATC	4 cut(s)	19, 167, 233, 443
ScrFI	CCNGG	1 cut(s)	54
SduI	GDGCHC	1 cut(s)	319
SfaNI	GCATC	2 cut(s)	297, 477
SgrAI	CRCCGGYG	1 cut(s)	226
SmiMI	CAYNNNNRTG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	180, 425, 449
SsiI	CCGC	3 cut(s)	159, 224, 275
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	52
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	1 cut(s)	416
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	260
TasI	AATT	3 cut(s)	180, 425, 449
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	226
TfiI	GAWTC	3 cut(s)	65, 149, 543
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	4 cut(s)	281, 367, 576, 579
TspDTI	ATGAA	4 cut(s)	149, 480, 508, 563
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	2 cut(s)	180, 449
XceI	RCATGY	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.