Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

18453283 .. 18454792

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1204700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAAGCAAGGCACATGAGAAAGATCTCAACCTCAAGGCAACAGAGCTGACACTACGGTTGCCAGGGAGAGATGAAATTATTGAGCTTCCTAATCAAAACAAGAAGAGAGGACTGCCAGCTGACTCAAAAAATGAAGAAGGAAGCACTGATGCTAAAAACGCTCAAAAGGAAACCCCTCCTGCAAAGGCACAAATAGTGGGGTGGCCACCAATCAGATCTTATAGGAAGAACAGCCTCCAAGCAAATAAAAATGCAGAGGGTGAGACTGCTACCGGGATTTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGATCTTAAGGTTTACAAATGCTACCCAGAACTCCTCAAGGCCTTGGAAGTCATGTTTAAGTTTACTATAGGTCAATACTCAGAGAGGGAGGGCTACAAAGGATCAGAATATGCACCTACTTATAAGGACAAAGATGGTGATTGGATGCTGGTTGGAGATGTTCCATGGGATATGTTCATGTCATCCTGCAAGAAGTTGAGAATCATGAAAGGATCAGAGGCCAGAGGTTTGGGGTGTGGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

191

Amino Acids

21.34

Weight (kDa)

8.95

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	35 - 187	1.3e-58	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AclWI	GGATC	2 cut(s)	436, 547
AcoI	YGGCCR	1 cut(s)	206
AflII	CTTAAG	1 cut(s)	332
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	49, 88, 122
AluI	AGCT	3 cut(s)	49, 88, 122
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	2 cut(s)	436, 547
AoxI	GGCC	3 cut(s)	206, 366, 546
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	275, 476
BalI	TGGCCA	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	310
BccI	CCATC	2 cut(s)	296, 455
BciT130I	CCWGG	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	332
BglII	AGATCT	2 cut(s)	25, 218
Bme1390I	CCNGG	2 cut(s)	66, 277
BmrFI	CCNGG	2 cut(s)	66, 277
BmsI	GCATC	2 cut(s)	142, 462
BpuEI	CTTGAG	2 cut(s)	20, 347
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	3 cut(s)	65, 369, 491
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 369, 491
BseGI	GGATG	3 cut(s)	307, 477, 509
BseMII	CTCAG	2 cut(s)	331, 420
BseRI	GAGGAG	1 cut(s)	350
BshFI	GGCC	3 cut(s)	208, 368, 548
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	208, 368, 548
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	5 cut(s)	25, 218, 328, 428, 539
Bsp19I	CCATGG	1 cut(s)	491
BspANI	GGCC	3 cut(s)	208, 368, 548
BspCNI	CTCAG	2 cut(s)	330, 419
BspHI	TCATGA	1 cut(s)	531
BspPI	GGATC	2 cut(s)	436, 547
BspTI	CTTAAG	1 cut(s)	332
BssECI	CCNNGG	3 cut(s)	65, 369, 491
BssMI	GATC	5 cut(s)	25, 218, 328, 428, 539
BssT1I	CCWWGG	2 cut(s)	369, 491
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	317, 406
BstDSI	CCRYGG	1 cut(s)	491
BstF5I	GGATG	3 cut(s)	307, 477, 509
BstKTI	GATC	5 cut(s)	28, 221, 331, 431, 542
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	25, 218, 328, 428, 539
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	64, 275
BstSFI	CTRYAG	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	25, 218
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	2 cut(s)	25, 218
BsuRI	GGCC	3 cut(s)	208, 368, 548
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	307, 477, 509
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	120
CciI	TCATGA	1 cut(s)	531
CviAII	CATG	6 cut(s)	17, 298, 379, 492, 505, 532
CviJI	RGCY	8 cut(s)	49, 88, 122, 208, 237, 368, 420, 548
CviKI_1	RGCY	8 cut(s)	49, 88, 122, 208, 237, 368, 420, 548
DdeI	CTNAG	2 cut(s)	317, 406
DpnI	GATC	5 cut(s)	27, 220, 330, 430, 541
DpnII	GATC	5 cut(s)	25, 218, 328, 428, 539
EaeI	YGGCCR	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	2 cut(s)	369, 491
Eco147I	AGGCCT	1 cut(s)	368
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	2 cut(s)	369, 491
ErhI	CCWWGG	2 cut(s)	369, 491
FaeI	CATG	6 cut(s)	20, 301, 382, 495, 508, 535
FatI	CATG	6 cut(s)	16, 297, 378, 491, 504, 531
FokI	GGATG	3 cut(s)	314, 484, 496
HaeIII	GGCC	3 cut(s)	208, 368, 548
HapII	CCGG	1 cut(s)	276
Hin1II	CATG	6 cut(s)	20, 301, 382, 495, 508, 535
HinfI	GANTC	2 cut(s)	125, 528
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	275, 476
Hpy166II	GTNNAC	2 cut(s)	340, 390
Hpy188I	TCNGA	5 cut(s)	218, 320, 409, 433, 544
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	2 cut(s)	340, 390
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	185, 257, 440, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	2 cut(s)	317, 406
Hsp92II	CATG	6 cut(s)	20, 301, 382, 495, 508, 535
Kzo9I	GATC	5 cut(s)	25, 218, 328, 428, 539
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	51, 78, 132, 195, 289, 366, 461, 526, 562
LweI	GCATC	2 cut(s)	142, 462
MalI	GATC	5 cut(s)	27, 220, 330, 430, 541
MboI	GATC	5 cut(s)	25, 218, 328, 428, 539
MboII	GAAGA	3 cut(s)	118, 149, 241
MflI	RGATCY	2 cut(s)	25, 218
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	208
MluCI	AATT	1 cut(s)	78
MluNI	TGGCCA	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	460
Mox20I	TGGCCA	1 cut(s)	208
MscI	TGGCCA	1 cut(s)	208
MseI	TTAA	2 cut(s)	333, 384
Msp20I	TGGCCA	1 cut(s)	208
MspA1I	CMGCKG	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	276
MspR9I	CCNGG	2 cut(s)	66, 277
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	161
NciI	CCSGG	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	25, 218, 328, 428, 539
NlaIII	CATG	6 cut(s)	20, 301, 382, 495, 508, 535
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	528
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	25, 218
PvuII	CAGCTG	1 cut(s)	122
SaqAI	TTAA	2 cut(s)	333, 384
Sau3AI	GATC	5 cut(s)	25, 218, 328, 428, 539
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	2 cut(s)	66, 277
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	142, 462
SfcI	CTRYAG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	35, 332, 362
SmoI	CTYRAG	3 cut(s)	35, 332, 362
Sse9I	AATT	1 cut(s)	78
SseBI	AGGCCT	1 cut(s)	368
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	64, 275
StyI	CCWWGG	2 cut(s)	369, 491
TaaI	ACNGT	1 cut(s)	60
TasI	AATT	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	528
Tru1I	TTAA	2 cut(s)	333, 384
Tru9I	TTAA	2 cut(s)	333, 384
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	90, 150, 493, 548
TspRI	CASTG	1 cut(s)	154
Vha464I	CTTAAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.