Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

48980901 .. 48982109

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCCACCGGTGAGATCATACCGGAAAAACTGTTTCCAGGTGAAGAAAACCGAGGAGAAAGCGGTGGGATGTTCGTGAAAGTCAGCATGGATGGAGCTCCTTACCTTCGAAAGATGGACTTGAAGGTTTACAAAGGATATCCAGAGCTGCTTAAGGCCTTGGAGGACATGTTCAAGTTCAAGGTTGGTGAATATTGTGATAAGGAACTAGGGTATAACAACAGATCCGAGTTTGTGCCAACTTATGAAGACAAAGATGGAGATTGGATGCTTCTTGGAGATGTTCCATGGGAGATGTTTTTCACTTCATGCAACAGGCTGAGAATTATGAAAGGTTCAGAAGCCAAAGGCTTAGGTTGTGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

122

Amino Acids

13.89

Weight (kDa)

4.96

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	20 - 119	1e-41	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	63, 362
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	3
AflII	CTTAAG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	168
AgeI	ACCGGT	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	124, 175, 181
AjnI	CCWGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	2 cut(s)	98, 148
AluI	AGCT	2 cut(s)	98, 148
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	2 cut(s)	3, 156
ApeKI	GCWGC	1 cut(s)	148
AsiGI	ACCGGT	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	23, 53, 200
AsuII	TTCGAA	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	3 cut(s)	86, 109, 251
BciT130I	CCWGG	1 cut(s)	39
BfaI	CTAG	1 cut(s)	209
BfrI	CTTAAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	52, 159, 287
BsaWI	WCCGGW	2 cut(s)	8, 22
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse118I	RCCGGY	1 cut(s)	8
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	52, 159, 287
BseGI	GGATG	3 cut(s)	75, 97, 273
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	135
BshFI	GGCC	2 cut(s)	5, 158
BshTI	ACCGGT	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	2 cut(s)	9, 23
BsnI	GGCC	2 cut(s)	5, 158
Bsp119I	TTCGAA	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	15, 224
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	2 cut(s)	63, 362
BspANI	GGCC	2 cut(s)	5, 158
BspCNI	CTCAG	1 cut(s)	312
BspPI	GGATC	1 cut(s)	219
BspT104I	TTCGAA	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	152
BsrFI	RCCGGY	1 cut(s)	8
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	3 cut(s)	52, 159, 287
BssMI	GATC	2 cut(s)	15, 224
BssT1I	CCWWGG	2 cut(s)	159, 287
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	109
BstDEI	CTNAG	2 cut(s)	320, 352
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	3 cut(s)	75, 97, 273
BstKTI	GATC	2 cut(s)	18, 227
BstMBI	GATC	2 cut(s)	15, 224
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	5, 158
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	75, 97, 273
Cfr10I	RCCGGY	1 cut(s)	8
CspAI	ACCGGT	1 cut(s)	8
CviAII	CATG	4 cut(s)	88, 169, 288, 309
CviJI	RGCY	7 cut(s)	5, 98, 148, 158, 319, 344, 351
CviKI_1	RGCY	7 cut(s)	5, 98, 148, 158, 319, 344, 351
DdeI	CTNAG	2 cut(s)	320, 352
DpnI	GATC	2 cut(s)	17, 226
DpnII	GATC	2 cut(s)	15, 224
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	159, 287
Eco147I	AGGCCT	1 cut(s)	158
Eco24I	GRGCYC	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	140
EcoT14I	CCWWGG	2 cut(s)	159, 287
EcoT38I	GRGCYC	1 cut(s)	100
ErhI	CCWWGG	2 cut(s)	159, 287
FaeI	CATG	4 cut(s)	91, 172, 291, 312
FaiI	YATR	8 cut(s)	20, 89, 170, 216, 246, 289, 310, 329
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	4 cut(s)	87, 168, 287, 308
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	3 cut(s)	82, 104, 280
FriOI	GRGCYC	1 cut(s)	100
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	5, 158
HapII	CCGG	2 cut(s)	9, 23
Hin1II	CATG	4 cut(s)	91, 172, 291, 312
HpaII	CCGG	2 cut(s)	9, 23
HphI	GGTGA	3 cut(s)	23, 53, 200
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	229, 340
Hpy188III	TCNNGA	2 cut(s)	76, 143
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	116, 118
HpyCH4III	ACNGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	312
HpyF3I	CTNAG	2 cut(s)	320, 352
Hsp92II	CATG	4 cut(s)	91, 172, 291, 312
Kzo9I	GATC	2 cut(s)	15, 224
LmnI	GCTCC	2 cut(s)	95, 103
LpnPI	CCDG	6 cut(s)	22, 24, 36, 51, 156, 301
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	1 cut(s)	209
MalI	GATC	2 cut(s)	17, 226
MboI	GATC	2 cut(s)	15, 224
MboII	GAAGA	2 cut(s)	56, 260
MflI	RGATCY	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	100
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	324
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	2 cut(s)	47, 157
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	2 cut(s)	9, 23
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	2 cut(s)	15, 224
NlaIII	CATG	4 cut(s)	91, 172, 291, 312
NspI	RCATGY	1 cut(s)	172
NspV	TTCGAA	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	158
PciI	ACATGT	1 cut(s)	168
PinAI	ACCGGT	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	2 cut(s)	15, 224
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	8 cut(s)	43, 100, 108, 129, 150, 186, 337, 358
SfaNI	GCATC	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	109
SgrAI	CRCCGGYG	1 cut(s)	8
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	324
SseBI	AGGCCT	1 cut(s)	158
SsiI	CCGC	2 cut(s)	63, 362
SspI	AATATT	1 cut(s)	194
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	2 cut(s)	159, 287
TaaI	ACNGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	109
TasI	AATT	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	261, 297, 344
Vha464I	CTTAAG	1 cut(s)	152
XceI	RCATGY	1 cut(s)	172
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.