Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

61335650 .. 61336584

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009968

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGACAGCAAGAGCTATGATAATGATCTTAACCTTAACCTCAAGGCAACCGAGCTGAGGTTGGGGTTGCCGGGATCAGAAGCAAGCGAAGATCAAGCAGTGCCGGTTCCCAGTAGTGCTTTAAACAAGAAGAGAGCATTGCCTGAGAAAAGTGAAGAAGTGATTGGATCCAAGGGGAACACTGATGATGCTCAAAAGATAACTGCTCCTCCTACAAAGGCACAAATAGTGGGGTGGCCACCAGTCAGATCTTACAGGAAGAACTGCCTTCAAGCCAATAAGATTAGTGAGGCTGAGACTCCTGGGATTTATGTGAAAGTGAGCATGGATGGGGCACCTTACCTCAGAAAGATTGATCTGAAGGTTTACAAAGGTTACCCAGATCTGCTAAAGGCTCTAGAATCCATGTTTAAATTCATTGTAGGCCAATACTCAGAGAGGGAAGGCTACAAAGGATCAGATTATGCACCTACTTACGAGGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAAATGTTCATGTCATCCTGTAAGAAGTTGAGAATCATGAAAGGGTCAGAAGCTAGAGGCTTGGGCTGTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

200

Amino Acids

22.01

Weight (kDa)

7.57

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	16 - 196	5.3e-60	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	334
AclWI	GGATC	4 cut(s)	82, 162, 175, 463
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	3 cut(s)	15, 55, 575
AluI	AGCT	3 cut(s)	15, 55, 575
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	4 cut(s)	82, 162, 175, 463
AoxI	GGCC	2 cut(s)	236, 424
ApoI	RAATTY	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	334
BbvCI	CCTCAGC	1 cut(s)	56
BccI	CCATC	2 cut(s)	323, 482
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	3 cut(s)	398, 503, 576
BglII	AGATCT	2 cut(s)	248, 382
Bme1390I	CCNGG	2 cut(s)	72, 303
BmiI	GGNNCC	3 cut(s)	108, 169, 336
BmrFI	CCNGG	2 cut(s)	72, 303
BmrI	ACTGGG	1 cut(s)	105
BmsI	GCATC	2 cut(s)	178, 489
BmuI	ACTGGG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	3 cut(s)	171, 302, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
Bse118I	RCCGGY	1 cut(s)	103
Bse1I	ACTGG	3 cut(s)	111, 242, 500
Bse3DI	GCAATG	1 cut(s)	137
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	171, 302, 518
BseGI	GGATG	3 cut(s)	334, 504, 536
BseJI	GATNNNNATC	1 cut(s)	24
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMI	GCAATG	1 cut(s)	137
BseMII	CTCAG	5 cut(s)	47, 135, 285, 358, 447
BseNI	ACTGG	3 cut(s)	111, 242, 500
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	238, 426
BshNI	GGYRCC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	71, 104
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	238, 426
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
Bsp19I	CCATGG	1 cut(s)	518
BspANI	GGCC	2 cut(s)	238, 426
BspCNI	CTCAG	5 cut(s)	48, 136, 286, 357, 446
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	3 cut(s)	108, 169, 336
BspPI	GGATC	4 cut(s)	82, 162, 175, 463
BspT107I	GGYRCC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	111, 242, 500
BssAI	RCCGGY	1 cut(s)	103
BssECI	CCNNGG	3 cut(s)	171, 302, 518
BssMI	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
BssT1I	CCWWGG	2 cut(s)	171, 518
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	85
BstDEI	CTNAG	5 cut(s)	56, 144, 294, 344, 433
BstDSI	CCRYGG	1 cut(s)	518
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	334, 504, 536
BstKTI	GATC	8 cut(s)	28, 77, 94, 170, 251, 358, 385, 458
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	70, 301
BstSLI	GKGCMC	1 cut(s)	337
BstX2I	RGATCY	3 cut(s)	167, 248, 382
BstYI	RGATCY	3 cut(s)	167, 248, 382
BsuRI	GGCC	2 cut(s)	238, 426
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	334, 504, 536
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 180
Cac8I	GCNNGC	1 cut(s)	85
CciI	TCATGA	1 cut(s)	558
Cfr10I	RCCGGY	1 cut(s)	103
CviAII	CATG	5 cut(s)	325, 406, 519, 532, 559
DdeI	CTNAG	5 cut(s)	56, 144, 294, 344, 433
DpnI	GATC	8 cut(s)	27, 76, 93, 169, 250, 357, 384, 457
DpnII	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
DraI	TTTAAA	2 cut(s)	123, 412
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco130I	CCWWGG	2 cut(s)	171, 518
Eco57I	CTGAAG	1 cut(s)	380
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	171, 518
ErhI	CCWWGG	2 cut(s)	171, 518
FaeI	CATG	5 cut(s)	328, 409, 522, 535, 562
FaiI	YATR	9 cut(s)	18, 312, 326, 407, 465, 520, 533, 560, 598
FatI	CATG	5 cut(s)	324, 405, 518, 531, 558
FokI	GGATG	3 cut(s)	341, 511, 523
FspBI	CTAG	3 cut(s)	398, 503, 576
HaeIII	GGCC	2 cut(s)	238, 426
HapII	CCGG	2 cut(s)	71, 104
Hin1II	CATG	5 cut(s)	328, 409, 522, 535, 562
HinfI	GANTC	3 cut(s)	298, 401, 555
HpaII	CCGG	2 cut(s)	71, 104
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	7 cut(s)	79, 248, 347, 360, 436, 460, 571
Hpy188III	TCNNGA	2 cut(s)	398, 559
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	3 cut(s)	278, 355, 437
HpyCH4V	TGCA	1 cut(s)	467
HpyF3I	CTNAG	5 cut(s)	56, 144, 294, 344, 433
Hsp92II	CATG	5 cut(s)	328, 409, 522, 535, 562
Kzo9I	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
LmnI	GCTCC	1 cut(s)	211
LweI	GCATC	2 cut(s)	178, 489
MaeI	CTAG	3 cut(s)	398, 503, 576
MaeIII	GTNAC	2 cut(s)	374, 491
MalI	GATC	8 cut(s)	27, 76, 93, 169, 250, 357, 384, 457
MboI	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
MboII	GAAGA	4 cut(s)	101, 142, 167, 271
MflI	RGATCY	3 cut(s)	167, 248, 382
MhlI	GDGCHC	1 cut(s)	337
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	238
MlyI	GAGTC	1 cut(s)	292
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	8 cut(s)	50, 51, 219, 283, 353, 432, 472, 572
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	4 cut(s)	30, 36, 122, 411
Msp20I	TGGCCA	1 cut(s)	238
MspI	CCGG	2 cut(s)	71, 104
MspR9I	CCNGG	2 cut(s)	72, 303
MvaI	CCWGG	1 cut(s)	303
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	518
NdeII	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
NlaIII	CATG	5 cut(s)	328, 409, 522, 535, 562
NlaIV	GGNNCC	3 cut(s)	108, 169, 336
NmuCI	GTSAC	1 cut(s)	491
PagI	TCATGA	1 cut(s)	558
PfeI	GAWTC	2 cut(s)	401, 555
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	108, 169, 336
PsuI	RGATCY	3 cut(s)	167, 248, 382
SaqAI	TTAA	4 cut(s)	30, 36, 122, 411
Sau3AI	GATC	8 cut(s)	25, 74, 91, 167, 248, 355, 382, 455
SchI	GAGTC	1 cut(s)	292
ScrFI	CCNGG	2 cut(s)	72, 303
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	2 cut(s)	178, 489
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	413
SspMI	CTAG	3 cut(s)	398, 503, 576
StyD4I	CCNGG	2 cut(s)	70, 301
StyI	CCWWGG	2 cut(s)	171, 518
TasI	AATT	1 cut(s)	413
TfiI	GAWTC	2 cut(s)	401, 555
Tru1I	TTAA	4 cut(s)	30, 36, 122, 411
Tru9I	TTAA	4 cut(s)	30, 36, 122, 411
TscAI	CASTG	2 cut(s)	105, 187
TseFI	GTSAC	1 cut(s)	491
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	406, 520, 575
TspRI	CASTG	2 cut(s)	105, 187
XapI	RAATTY	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	3 cut(s)	398, 503, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.