Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001527.1

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

297056 .. 297738

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001527.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggaagggtcagtgagctatgaaaactatgacgagcagctcaacttcaaggcaactgagctcagattgggattgcccggaagcgggatggaagaatcagctgcatcacctcctcctaatactaagaagagggcttcaccggatcaagagttggtggatgaggagtgcaggtcgtctactaccgacaatgagacaccggactttacttcccgtcccaccaagacacaagtagttggatggcctccgatcagatcttaccggaaaaacgttatgcaagcgtacgtgaaagtaagcgtagacggagctcctttcctgaggaagattgatatcaaggtttacaagagctacccggaactcctcaagtccttacaggacatgttcaagctaaccattggtagctactcagagagagaaggctacaatggatctgaatttgctcctacttatcaagacaaagatggtgactggatgctagttggagatgtgccatggagtatgtttgcgtcgtcctgcaaaaggctgagaatcatgaaaggatctgaagctagaggactagcttgtccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

5.4

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	558
Acc36I	ACCTGC	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	176, 297
AciI	CCGC	1 cut(s)	84
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	3 cut(s)	150, 433, 544
AcsI	RAATTY	1 cut(s)	431
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	83, 84, 516
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	49, 382
Alw21I	GWGCWC	2 cut(s)	63, 307
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	3 cut(s)	150, 433, 544
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	2 cut(s)	37, 101
ApoI	RAATTY	1 cut(s)	431
AsuC2I	CCSGG	2 cut(s)	78, 350
AsuHPI	GGTGA	3 cut(s)	99, 129, 473
AxyI	CCTNAGG	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	63, 307
Bbv12I	GWGCWC	2 cut(s)	63, 307
BbvI	GCAGC	2 cut(s)	49, 88
BccI	CCATC	3 cut(s)	82, 231, 452
BcnI	CCSGG	2 cut(s)	78, 350
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	3 cut(s)	473, 546, 554
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	2 cut(s)	38, 102
BlsI	GCNGC	2 cut(s)	39, 103
Bme1390I	CCNGG	2 cut(s)	78, 350
BmrFI	CCNGG	2 cut(s)	78, 350
BmsI	GCATC	2 cut(s)	113, 459
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	78, 350
BsaAI	YACGTR	1 cut(s)	283
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	488
BsaWI	WCCGGW	3 cut(s)	139, 196, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 84, 516
Bse1I	ACTGG	1 cut(s)	470
Bse21I	CCTNAGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	1 cut(s)	488
BseGI	GGATG	4 cut(s)	93, 163, 242, 474
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	3 cut(s)	83, 84, 516
BseMII	CTCAG	5 cut(s)	48, 76, 305, 417, 512
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	3 cut(s)	102, 176, 347
BseXI	GCAGC	2 cut(s)	49, 88
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	63, 307
BsiSI	CCGG	5 cut(s)	78, 140, 197, 259, 350
BsiWI	CGTACG	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	198, 546
BslI	CCNNNNNNNGG	3 cut(s)	83, 84, 516
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	198, 546
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	63, 307
Bsp143I	GATC	5 cut(s)	142, 246, 251, 425, 536
Bsp19I	CCATGG	1 cut(s)	488
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	5 cut(s)	49, 75, 306, 416, 513
BspHI	TCATGA	1 cut(s)	528
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	3 cut(s)	150, 433, 544
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	488
BssMI	GATC	5 cut(s)	142, 246, 251, 425, 536
BssT1I	CCWWGG	1 cut(s)	488
Bst6I	CTCTTC	1 cut(s)	122
BstBAI	YACGTR	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	6 cut(s)	57, 62, 123, 314, 403, 521
BstDSI	CCRYGG	1 cut(s)	488
BstENI	CCTNNNNNAGG	1 cut(s)	514
BstF5I	GGATG	4 cut(s)	93, 163, 242, 474
BstKTI	GATC	5 cut(s)	145, 249, 254, 428, 539
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	5 cut(s)	142, 246, 251, 425, 536
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	2 cut(s)	76, 348
BstV1I	GCAGC	2 cut(s)	49, 88
BstX2I	RGATCY	3 cut(s)	251, 425, 536
BstYI	RGATCY	3 cut(s)	251, 425, 536
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	488
BtsCI	GGATG	4 cut(s)	93, 163, 242, 474
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	276
CciI	TCATGA	1 cut(s)	528
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	376, 489, 529
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	6 cut(s)	57, 62, 123, 314, 403, 521
DpnI	GATC	5 cut(s)	144, 248, 253, 427, 538
DpnII	GATC	5 cut(s)	142, 246, 251, 425, 536
DrdI	GACNNNNNNGTC	1 cut(s)	558
DseDI	GACNNNNNNGTC	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	2 cut(s)	61, 305
Eco130I	CCWWGG	1 cut(s)	488
Eco24I	GRGCYC	2 cut(s)	63, 307
Eco32I	GATATC	1 cut(s)	328
Eco53kI	GAGCTC	2 cut(s)	61, 305
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	314
EcoICRI	GAGCTC	2 cut(s)	61, 305
EcoNI	CCTNNNNNAGG	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	63, 307
ErhI	CCWWGG	1 cut(s)	488
FaeI	CATG	3 cut(s)	379, 492, 532
FaiI	YATR	7 cut(s)	21, 30, 272, 377, 490, 497, 530
FaqI	GGGAC	2 cut(s)	198, 546
FatI	CATG	3 cut(s)	375, 488, 528
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	2 cut(s)	176, 297
Fnu4HI	GCNGC	2 cut(s)	38, 102
FokI	GGATG	4 cut(s)	100, 170, 249, 481
FriOI	GRGCYC	2 cut(s)	63, 307
Fsp4HI	GCNGC	2 cut(s)	38, 102
FspBI	CTAG	3 cut(s)	473, 546, 554
GluI	GCNGC	2 cut(s)	38, 102
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	5 cut(s)	78, 140, 197, 259, 350
HgaI	GACGC	1 cut(s)	492
Hin1II	CATG	3 cut(s)	379, 492, 532
HinfI	GANTC	2 cut(s)	95, 525
HpaII	CCGG	5 cut(s)	78, 140, 197, 259, 350
HphI	GGTGA	3 cut(s)	99, 129, 473
Hpy166II	GTNNAC	3 cut(s)	177, 298, 337
Hpy188I	TCNGA	6 cut(s)	65, 246, 251, 406, 430, 541
Hpy188III	TCNNGA	4 cut(s)	146, 313, 449, 529
Hpy8I	GTNNAC	3 cut(s)	177, 298, 337
Hpy99I	CGWCG	1 cut(s)	508
HpyAV	CCTTC	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	267, 282
HpyCH4V	TGCA	4 cut(s)	104, 168, 274, 513
HpyF3I	CTNAG	6 cut(s)	57, 62, 123, 314, 403, 521
HpySE526I	ACGT	2 cut(s)	267, 282
Hsp92II	CATG	3 cut(s)	379, 492, 532
Kzo9I	GATC	5 cut(s)	142, 246, 251, 425, 536
LmnI	GCTCC	3 cut(s)	302, 310, 442
Lsp1109I	GCAGC	2 cut(s)	49, 88
LweI	GCATC	2 cut(s)	113, 459
MaeI	CTAG	3 cut(s)	473, 546, 554
MaeII	ACGT	2 cut(s)	267, 282
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	5 cut(s)	144, 248, 253, 427, 538
MboI	GATC	5 cut(s)	142, 246, 251, 425, 536
MboII	GAAGA	3 cut(s)	104, 139, 331
MflI	RGATCY	3 cut(s)	251, 425, 536
MhlI	GDGCHC	2 cut(s)	63, 307
MluCI	AATT	1 cut(s)	431
MmeI	TCCRAC	2 cut(s)	214, 457
MnlI	CCTC	8 cut(s)	120, 123, 123, 154, 252, 309, 368, 542
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	5 cut(s)	78, 140, 197, 259, 350
MspR9I	CCNGG	2 cut(s)	78, 350
NciI	CCSGG	2 cut(s)	78, 350
NcoI	CCATGG	1 cut(s)	488
NdeII	GATC	5 cut(s)	142, 246, 251, 425, 536
NlaIII	CATG	3 cut(s)	379, 492, 532
NmuCI	GTSAC	1 cut(s)	461
NspI	RCATGY	1 cut(s)	379
PagI	TCATGA	1 cut(s)	528
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	95, 525
Pfl23II	CGTACG	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	39, 103
Ppu21I	YACGTR	1 cut(s)	283
PscI	ACATGT	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	63, 307
Psp1406I	AACGTT	1 cut(s)	267
PspLI	CGTACG	1 cut(s)	279
PsuI	RGATCY	3 cut(s)	251, 425, 536
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SacI	GAGCTC	2 cut(s)	63, 307
SatI	GCNGC	2 cut(s)	38, 102
Sau3AI	GATC	5 cut(s)	142, 246, 251, 425, 536
ScrFI	CCNGG	2 cut(s)	78, 350
SduI	GDGCHC	2 cut(s)	63, 307
SfaNI	GCATC	2 cut(s)	113, 459
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	431
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	473, 546, 554
SstI	GAGCTC	2 cut(s)	63, 307
StyD4I	CCNGG	2 cut(s)	76, 348
StyI	CCWWGG	1 cut(s)	488
TaiI	ACGT	2 cut(s)	270, 285
TasI	AATT	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	95, 525
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	37, 101
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	2 cut(s)	36, 545
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	18
XagI	CCTNNNNNAGG	1 cut(s)	514
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	176, 297
XspI	CTAG	3 cut(s)	473, 546, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.