Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

18490601 .. 18492052

Gene Structure 1452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAAGGGTCGGTGAGCTATGAAAGCCATGACGAGCAGCTCAACTTCAAGGCAACTGAGCTCAGATTGGGATTGCCCGGAAGCGGCATTGAAGAATCAGCTGCATCACCTCCTCCTAGTACTAAGAAGAGGGCTTCACCGGAGCAAGACTCGGCCGATAATGAGGAGTGCAGGTCGTCTACTACCGACGATGAGACACCAGATTTGACTTCCCGTCCATCCAAGACACAAGTTGTTGGATGGCCTCCGATCAGATCTTACCGGAAAAACGCTATGCAAGCGTATGTGAAAGTAAGCGTAGACGGAGCTCCTTACCTGAGGAAGATTGATATCAAGGTTTACAAGAGCTACCCGGAACTCCTCAAGGCCTTAGAGGAAATGTTCAAGCTGACTATTGGTAGCTACTCAGAGAGAGAAGGCTACAATGGATCTGAGTTTGCTCCTACTTATCAAGACAAAGATGGTGACTGGATGCTAGTCGGAGATGTGCCATGGAGTATGTTTTCTTCTTCCTGCAAAAGGCTGAGAATCATGAAAGGATCTGAAGCTAGAGGACTGGCTTGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

5.23

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	18 - 93	8.8e-13	AUX/IAA family
AUX_IAA	PF02309	93 - 187	2.1e-41	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	162
AccI	GTMKAC	2 cut(s)	179, 300
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	436, 547
AcoI	YGGCCR	1 cut(s)	153
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	2 cut(s)	83, 519
AgsI	TTSAA	3 cut(s)	49, 92, 385
AhdI	GACNNNNNGTC	1 cut(s)	213
AluBI	AGCT	9 cut(s)	18, 40, 61, 101, 308, 348, 388, 402, 548
AluI	AGCT	9 cut(s)	18, 40, 61, 101, 308, 348, 388, 402, 548
Alw21I	GWGCWC	2 cut(s)	63, 310
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	436, 547
AoxI	GGCC	3 cut(s)	153, 242, 366
ApeKI	GCWGC	2 cut(s)	37, 101
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsuC2I	CCSGG	2 cut(s)	78, 353
AsuHPI	GGTGA	4 cut(s)	25, 99, 129, 476
AxyI	CCTNAGG	1 cut(s)	317
BanII	GRGCYC	2 cut(s)	63, 310
BarI	GAAGNNNNNNTAC	2 cut(s)	490, 522
Bbv12I	GWGCWC	2 cut(s)	63, 310
BbvI	GCAGC	2 cut(s)	49, 88
BccI	CCATC	3 cut(s)	226, 234, 455
BcnI	CCSGG	2 cut(s)	78, 353
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	3 cut(s)	117, 476, 549
BfuAI	ACCTGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	254
BisI	GCNGC	3 cut(s)	38, 85, 102
BlsI	GCNGC	3 cut(s)	39, 86, 103
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	2 cut(s)	78, 353
BmeRI	GACNNNNNGTC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	78, 353
BmsI	GCATC	2 cut(s)	113, 462
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	78, 353
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	491
BsaWI	WCCGGW	2 cut(s)	139, 261
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 519
Bse1I	ACTGG	2 cut(s)	473, 561
Bse21I	CCTNAGG	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	491
BseGI	GGATG	3 cut(s)	218, 245, 477
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	83, 519
BseMII	CTCAG	6 cut(s)	48, 76, 308, 420, 423, 515
BseNI	ACTGG	2 cut(s)	473, 561
BseRI	GAGGAG	3 cut(s)	102, 179, 350
BseX3I	CGGCCG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	49, 88
BsgI	GTGCAG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	155, 244, 368
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	63, 310
BsiSI	CCGG	4 cut(s)	78, 140, 262, 353
BslI	CCNNNNNNNGG	2 cut(s)	83, 519
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	3 cut(s)	155, 244, 368
Bsp1286I	GDGCHC	2 cut(s)	63, 310
Bsp143I	GATC	4 cut(s)	249, 254, 428, 539
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	3 cut(s)	155, 244, 368
BspCNI	CTCAG	6 cut(s)	49, 75, 309, 419, 424, 516
BspHI	TCATGA	1 cut(s)	531
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	436, 547
BsrI	ACTGG	2 cut(s)	473, 561
BssECI	CCNNGG	1 cut(s)	491
BssMI	GATC	4 cut(s)	249, 254, 428, 539
BssT1I	CCWWGG	1 cut(s)	491
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	8 cut(s)	57, 62, 123, 317, 370, 406, 432, 524
BstDSI	CCRYGG	1 cut(s)	491
BstENI	CCTNNNNNAGG	1 cut(s)	517
BstF5I	GGATG	3 cut(s)	218, 245, 477
BstKTI	GATC	4 cut(s)	252, 257, 431, 542
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	4 cut(s)	249, 254, 428, 539
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 278
BstSCI	CCNGG	2 cut(s)	76, 351
BstV1I	GCAGC	2 cut(s)	49, 88
BstX2I	RGATCY	3 cut(s)	254, 428, 539
BstYI	RGATCY	3 cut(s)	254, 428, 539
BstZI	CGGCCG	1 cut(s)	153
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	3 cut(s)	155, 244, 368
BtgI	CCRYGG	1 cut(s)	491
BtsCI	GGATG	3 cut(s)	218, 245, 477
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	531
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	3 cut(s)	29, 492, 532
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	8 cut(s)	57, 62, 123, 317, 370, 406, 432, 524
DpnI	GATC	4 cut(s)	251, 256, 430, 541
DpnII	GATC	4 cut(s)	249, 254, 428, 539
DrdI	GACNNNNNNGTC	1 cut(s)	561
DriI	GACNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	561
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	2 cut(s)	61, 308
EclXI	CGGCCG	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	491
Eco147I	AGGCCT	1 cut(s)	368
Eco24I	GRGCYC	2 cut(s)	63, 310
Eco32I	GATATC	1 cut(s)	331
Eco52I	CGGCCG	1 cut(s)	153
Eco53kI	GAGCTC	2 cut(s)	61, 308
Eco57I	CTGAAG	1 cut(s)	564
Eco81I	CCTNAGG	1 cut(s)	317
EcoICRI	GAGCTC	2 cut(s)	61, 308
EcoNI	CCTNNNNNAGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	2 cut(s)	63, 310
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	3 cut(s)	32, 495, 535
FaiI	YATR	7 cut(s)	21, 30, 275, 285, 493, 500, 533
FatI	CATG	3 cut(s)	28, 491, 531
FblI	GTMKAC	2 cut(s)	179, 300
Fnu4HI	GCNGC	3 cut(s)	38, 85, 102
FokI	GGATG	3 cut(s)	205, 252, 484
FriOI	GRGCYC	2 cut(s)	63, 310
Fsp4HI	GCNGC	3 cut(s)	38, 85, 102
FspBI	CTAG	3 cut(s)	117, 476, 549
GluI	GCNGC	3 cut(s)	38, 85, 102
HaeIII	GGCC	3 cut(s)	155, 244, 368
HapII	CCGG	4 cut(s)	78, 140, 262, 353
Hin1II	CATG	3 cut(s)	32, 495, 535
HinfI	GANTC	3 cut(s)	95, 149, 528
HpaII	CCGG	4 cut(s)	78, 140, 262, 353
HphI	GGTGA	4 cut(s)	25, 99, 129, 476
Hpy166II	GTNNAC	3 cut(s)	180, 301, 340
Hpy188I	TCNGA	8 cut(s)	65, 249, 254, 409, 433, 482, 544, 569
Hpy188III	TCNNGA	2 cut(s)	452, 532
Hpy8I	GTNNAC	3 cut(s)	180, 301, 340
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	104, 171, 277, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 278
HpyF3I	CTNAG	8 cut(s)	57, 62, 123, 317, 370, 406, 432, 524
Hsp92II	CATG	3 cut(s)	32, 495, 535
Kzo9I	GATC	4 cut(s)	249, 254, 428, 539
LmnI	GCTCC	4 cut(s)	142, 305, 313, 445
Lsp1109I	GCAGC	2 cut(s)	49, 88
LweI	GCATC	2 cut(s)	113, 462
MaeI	CTAG	3 cut(s)	117, 476, 549
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	4 cut(s)	251, 256, 430, 541
MboI	GATC	4 cut(s)	249, 254, 428, 539
MboII	GAAGA	5 cut(s)	104, 139, 334, 498, 501
MflI	RGATCY	3 cut(s)	254, 428, 539
MhlI	GDGCHC	2 cut(s)	63, 310
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	217, 460
MnlI	CCTC	9 cut(s)	120, 123, 123, 157, 255, 312, 367, 371, 545
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	4 cut(s)	78, 140, 262, 353
MspR9I	CCNGG	2 cut(s)	78, 353
MwoI	GCNNNNNNNGC	2 cut(s)	24, 278
NciI	CCSGG	2 cut(s)	78, 353
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	4 cut(s)	249, 254, 428, 539
NlaIII	CATG	3 cut(s)	32, 495, 535
NmeAIII	GCCGAG	1 cut(s)	131
NmuCI	GTSAC	1 cut(s)	464
PagI	TCATGA	1 cut(s)	531
PceI	AGGCCT	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	95, 528
PkrI	GCNGC	3 cut(s)	39, 86, 103
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	2 cut(s)	63, 310
PsuI	RGATCY	3 cut(s)	254, 428, 539
PvuII	CAGCTG	1 cut(s)	101
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SacI	GAGCTC	2 cut(s)	63, 310
SatI	GCNGC	3 cut(s)	38, 85, 102
Sau3AI	GATC	4 cut(s)	249, 254, 428, 539
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	78, 353
SduI	GDGCHC	2 cut(s)	63, 310
SfaNI	GCATC	2 cut(s)	113, 462
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SseBI	AGGCCT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	3 cut(s)	117, 476, 549
SstI	GAGCTC	2 cut(s)	63, 310
StuI	AGGCCT	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	76, 351
StyI	CCWWGG	1 cut(s)	491
TatI	WGTACW	1 cut(s)	119
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	95, 528
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	2 cut(s)	37, 101
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	36, 548
TspGWI	ACGGA	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	517
XmiI	GTMKAC	2 cut(s)	179, 300
XspI	CTAG	3 cut(s)	117, 476, 549
ZrmI	AGTACT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.