Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

2200694 .. 2201962

Gene Structure 1269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G002460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCTTTCCAAGCAGAGGATCTCAACCTTGAAGCCACTGAGCTCAGATTGGGCCTACCCGGAACCAAGGAATCCGAGCAACAAAAAACGAACAACAAAAGAGCATTGCCAGTTGAGCCTGAATCCAATGCTTCTTCAGCTCCCAAGCCTCCTCCCTCCAAGGCACAAGTAGTTGGGTGGCCACCGGTGAGATCATACCGGAAAAACTGTTTCCAGGCGAAGAAAAGCGAGGGAGAAAGCGGTGGGATGTTCGTGAAAGTCAGCATGGATGGAGCTCCATACCTTCGAAAGATGGACTTGAAGGTTTACAAAGGATATCCAGAGCTGCTTAAGGCCTTGGAGGACATGTTCAAGTTCAAGGTTGGTGAATATTGTGAGAAGGAACTAGGGTACAACAACAGATCCGAGTTTGTGCCAACTTATGAAGACAAAGATGGAGATTGGATGCTTCTTGGAGATGTTCCATGGGAGATGTTTTTCACTTCATGCAAGAGGCTGAGAATTATGAAAGGTTCAGAAGCCAAAGGCTTAGGTTGTGCGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

181

Amino Acids

20.39

Weight (kDa)

8.24

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	28 - 178	5.9e-56	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	240, 539
AclWI	GGATC	2 cut(s)	27, 396
AcoI	YGGCCR	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	345
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	32, 301, 352, 358
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	4 cut(s)	43, 140, 275, 325
AluI	AGCT	4 cut(s)	43, 140, 275, 325
Alw21I	GWGCWC	2 cut(s)	45, 277
AlwI	GGATC	2 cut(s)	27, 396
AoxI	GGCC	3 cut(s)	52, 179, 333
ApeKI	GCWGC	1 cut(s)	325
AsiGI	ACCGGT	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	199, 377
AsuII	TTCGAA	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	45, 277
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	45, 277
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	263, 286, 428
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	60, 215
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	60, 215
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	529
Bpu14I	TTCGAA	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	66, 159, 336, 464
BsaWI	WCCGGW	2 cut(s)	184, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	66, 159, 336, 464
BseGI	GGATG	3 cut(s)	252, 274, 450
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	3 cut(s)	30, 58, 488
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	3 cut(s)	54, 181, 335
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	45, 277
BsiSI	CCGG	3 cut(s)	60, 185, 199
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	3 cut(s)	54, 181, 335
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	45, 277
Bsp143I	GATC	3 cut(s)	19, 191, 401
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	2 cut(s)	240, 539
BspANI	GGCC	3 cut(s)	54, 181, 335
BspCNI	CTCAG	3 cut(s)	31, 57, 489
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	27, 396
BspT104I	TTCGAA	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	66, 159, 336, 464
BssMI	GATC	3 cut(s)	19, 191, 401
BssT1I	CCWWGG	4 cut(s)	66, 159, 336, 464
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	39, 44, 497, 529
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	3 cut(s)	252, 274, 450
BstKTI	GATC	3 cut(s)	22, 194, 404
BstMBI	GATC	3 cut(s)	19, 191, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	58, 213
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	19, 401
BstYI	RGATCY	2 cut(s)	19, 401
BsuRI	GGCC	3 cut(s)	54, 181, 335
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	3 cut(s)	252, 274, 450
BtsIMutI	CAGTG	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	4 cut(s)	265, 346, 465, 486
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	4 cut(s)	39, 44, 497, 529
DpnI	GATC	3 cut(s)	21, 193, 403
DpnII	GATC	3 cut(s)	19, 191, 401
EaeI	YGGCCR	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	43, 275
Eco130I	CCWWGG	4 cut(s)	66, 159, 336, 464
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	2 cut(s)	45, 277
Eco32I	GATATC	1 cut(s)	317
Eco53kI	GAGCTC	2 cut(s)	43, 275
Eco57I	CTGAAG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	43, 275
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	4 cut(s)	66, 159, 336, 464
EcoT38I	GRGCYC	2 cut(s)	45, 277
ErhI	CCWWGG	4 cut(s)	66, 159, 336, 464
FaeI	CATG	4 cut(s)	268, 349, 468, 489
FaiI	YATR	8 cut(s)	196, 266, 280, 347, 423, 466, 487, 506
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	4 cut(s)	264, 345, 464, 485
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	3 cut(s)	259, 281, 457
FriOI	GRGCYC	2 cut(s)	45, 277
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	54, 181, 335
HapII	CCGG	3 cut(s)	60, 185, 199
Hin1II	CATG	4 cut(s)	268, 349, 468, 489
HinfI	GANTC	2 cut(s)	71, 122
HpaII	CCGG	3 cut(s)	60, 185, 199
HphI	GGTGA	2 cut(s)	199, 377
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	4 cut(s)	47, 76, 406, 517
Hpy188III	TCNNGA	2 cut(s)	253, 320
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	293, 295, 373
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
HpyF3I	CTNAG	4 cut(s)	39, 44, 497, 529
Hsp92II	CATG	4 cut(s)	268, 349, 468, 489
Kzo9I	GATC	3 cut(s)	19, 191, 401
LmnI	GCTCC	3 cut(s)	145, 272, 280
LpnPI	CCDG	8 cut(s)	73, 123, 132, 198, 200, 212, 227, 333
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	386
MalI	GATC	3 cut(s)	21, 193, 403
MboI	GATC	3 cut(s)	19, 191, 401
MboII	GAAGA	3 cut(s)	126, 232, 437
MflI	RGATCY	2 cut(s)	19, 401
MhlI	GDGCHC	2 cut(s)	45, 277
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	1 cut(s)	501
MluNI	TGGCCA	1 cut(s)	181
MnlI	CCTC	7 cut(s)	10, 159, 162, 166, 223, 334, 486
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	3 cut(s)	60, 185, 199
MspR9I	CCNGG	2 cut(s)	60, 215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	3 cut(s)	19, 191, 401
NlaIII	CATG	4 cut(s)	268, 349, 468, 489
NlaIV	GGNNCC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	71, 122
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	327
PscI	ACATGT	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	45, 277
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	2 cut(s)	19, 401
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacI	GAGCTC	2 cut(s)	45, 277
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	3 cut(s)	19, 191, 401
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	60, 215
SduI	GDGCHC	2 cut(s)	45, 277
SfaNI	GCATC	1 cut(s)	435
SfuI	TTCGAA	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	1 cut(s)	501
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	2 cut(s)	240, 539
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	45, 277
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	58, 213
StyI	CCWWGG	4 cut(s)	66, 159, 336, 464
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	501
TfiI	GAWTC	2 cut(s)	71, 122
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	438, 474, 521
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.