Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 47 |
| AgsI | TTSAA | 2 cut(s) | 7, 13 |
| AsuHPI | GGTGA | 1 cut(s) | 32 |
| BbsI | GAAGAC | 1 cut(s) | 87 |
| BccI | CCATC | 1 cut(s) | 83 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BglII | AGATCT | 1 cut(s) | 56 |
| BmsI | GCATC | 1 cut(s) | 90 |
| BpiI | GAAGAC | 1 cut(s) | 87 |
| Bpu10I | CCTNAGC | 1 cut(s) | 184 |
| BsaJI | CCNNGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 105 |
| BseMII | CTCAG | 2 cut(s) | 51, 143 |
| Bsp143I | GATC | 1 cut(s) | 56 |
| Bsp19I | CCATGG | 1 cut(s) | 119 |
| BspCNI | CTCAG | 2 cut(s) | 52, 144 |
| BssECI | CCNNGG | 1 cut(s) | 119 |
| BssMI | GATC | 1 cut(s) | 56 |
| BssT1I | CCWWGG | 1 cut(s) | 119 |
| BstDEI | CTNAG | 3 cut(s) | 60, 152, 184 |
| BstDSI | CCRYGG | 1 cut(s) | 119 |
| BstF5I | GGATG | 1 cut(s) | 105 |
| BstKTI | GATC | 1 cut(s) | 59 |
| BstMBI | GATC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 87 |
| BstX2I | RGATCY | 1 cut(s) | 56 |
| BstYI | RGATCY | 1 cut(s) | 56 |
| BtgI | CCRYGG | 1 cut(s) | 119 |
| BtsCI | GGATG | 1 cut(s) | 105 |
| Csp6I | GTAC | 1 cut(s) | 46 |
| CviAII | CATG | 2 cut(s) | 120, 141 |
| CviJI | RGCY | 3 cut(s) | 151, 176, 183 |
| CviKI_1 | RGCY | 3 cut(s) | 151, 176, 183 |
| CviQI | GTAC | 1 cut(s) | 46 |
| DdeI | CTNAG | 3 cut(s) | 60, 152, 184 |
| DpnI | GATC | 1 cut(s) | 58 |
| DpnII | GATC | 1 cut(s) | 56 |
| Eco130I | CCWWGG | 1 cut(s) | 119 |
| EcoT14I | CCWWGG | 1 cut(s) | 119 |
| ErhI | CCWWGG | 1 cut(s) | 119 |
| FaeI | CATG | 2 cut(s) | 123, 144 |
| FaiI | YATR | 4 cut(s) | 78, 121, 142, 161 |
| FatI | CATG | 2 cut(s) | 119, 140 |
| FokI | GGATG | 1 cut(s) | 112 |
| FspBI | CTAG | 1 cut(s) | 41 |
| Hin1II | CATG | 2 cut(s) | 123, 144 |
| HphI | GGTGA | 1 cut(s) | 32 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 172 |
| HpyAV | CCTTC | 1 cut(s) | 28 |
| HpyCH4V | TGCA | 1 cut(s) | 144 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 152, 184 |
| Hsp92II | CATG | 2 cut(s) | 123, 144 |
| Kzo9I | GATC | 1 cut(s) | 56 |
| LweI | GCATC | 1 cut(s) | 90 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MalI | GATC | 1 cut(s) | 58 |
| MboI | GATC | 1 cut(s) | 56 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MflI | RGATCY | 1 cut(s) | 56 |
| MluCI | AATT | 1 cut(s) | 156 |
| MnlI | CCTC | 1 cut(s) | 141 |
| NcoI | CCATGG | 1 cut(s) | 119 |
| NdeII | GATC | 1 cut(s) | 56 |
| NlaIII | CATG | 2 cut(s) | 123, 144 |
| PsuI | RGATCY | 1 cut(s) | 56 |
| RsaI | GTAC | 1 cut(s) | 47 |
| RsaNI | GTAC | 1 cut(s) | 46 |
| Sau3AI | GATC | 1 cut(s) | 56 |
| SetI | ASST | 3 cut(s) | 18, 169, 190 |
| SfaNI | GCATC | 1 cut(s) | 90 |
| SgeI | CNNG | 7 cut(s) | 19, 25, 53, 119, 132, 153, 157 |
| Sse9I | AATT | 1 cut(s) | 156 |
| SspI | AATATT | 1 cut(s) | 26 |
| SspMI | CTAG | 1 cut(s) | 41 |
| StyI | CCWWGG | 1 cut(s) | 119 |
| TasI | AATT | 1 cut(s) | 156 |
| TspDTI | ATGAA | 3 cut(s) | 93, 129, 176 |
| XspI | CTAG | 1 cut(s) | 41 |