Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

2093123 .. 2094820

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAAAGCAAGGGCTATGAGAATGATCTTAACCTCAACCTCAAGGCAACCGAGCTGAGATTGGGGTTGCCGGGCTCAGATGCAAGCGAAGAGCAAGCAGCGGCGCCGGTTCCCAGTACTTTAAACAAGAAAAGAGTAGTGCCTGAGAAAAGTGAAGAAGAGATTGGATCCAAGAGAGGCACTGATGATGCTGAAAAGATAACTGCTCCTCCTGCAAAGGCACAAATAGTGGGGTGGCCACCGGTCAGATCTTACAGGAAGAACTGCCTTCAGGCTAGTAAGAATAGTGAGGCTGAGACTCCTGGGATTTATGTGAAAGTGAGCATGGATGGGGCACCTTACCTCAGAAAGATTGATCTGAAGGTTTACAAAGGCTACCCAGATCTGCTAAAGGGTCTAGAGTCCATGTTTAAATTCACTGTAGGCCAATACACAGAGAGGGAAGGCTACAAAGGATCGGATTATGCACCTACTTACGAGGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTTCCATGGGAAATGTTCATGTCATCCTGTAAGAAGTTGAGAATCATGAAAGGGTCAGAAGCTAGAGGCTTGGGTTGTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

200

Amino Acids

22.01

Weight (kDa)

6.44

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	16 - 196	2.1e-60	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	103, 334
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	3 cut(s)	162, 175, 463
AcoI	YGGCCR	1 cut(s)	236
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	2 cut(s)	254, 380
AcyI	GRCGYC	1 cut(s)	104
AfaI	GTAC	1 cut(s)	118
AgeI	ACCGGT	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	301
AjuI	GAANNNNNNNTTGG	2 cut(s)	147, 179
AluBI	AGCT	2 cut(s)	55, 575
AluI	AGCT	2 cut(s)	55, 575
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	3 cut(s)	162, 175, 463
AoxI	GGCC	2 cut(s)	236, 424
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	413
AsiGI	ACCGGT	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	503
BaeGI	GKGCMC	1 cut(s)	337
BalI	TGGCCA	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	2 cut(s)	103, 334
BanII	GRGCYC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	110
BccI	CCATC	2 cut(s)	323, 482
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	4 cut(s)	276, 398, 503, 576
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	107
BglII	AGATCT	2 cut(s)	248, 382
BisI	GCNGC	2 cut(s)	99, 102
BlsI	GCNGC	2 cut(s)	100, 103
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	72, 303
BmiI	GGNNCC	4 cut(s)	105, 111, 169, 336
BmrFI	CCNGG	2 cut(s)	72, 303
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	70, 178, 489
BmuI	ACTGGG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	104
BsaJI	CCNNGG	2 cut(s)	302, 518
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	2 cut(s)	193, 223
Bse118I	RCCGGY	2 cut(s)	106, 241
Bse1I	ACTGG	2 cut(s)	114, 500
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	302, 518
BseGI	GGATG	3 cut(s)	334, 504, 536
BseMII	CTCAG	5 cut(s)	47, 90, 135, 285, 358
BseNI	ACTGG	2 cut(s)	114, 500
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	110
BshFI	GGCC	2 cut(s)	238, 426
BshNI	GGYRCC	2 cut(s)	103, 334
BshTI	ACCGGT	1 cut(s)	241
BsiSI	CCGG	3 cut(s)	71, 107, 242
BsmAI	GTCTC	1 cut(s)	290
BsnI	GGCC	2 cut(s)	238, 426
Bsp1286I	GDGCHC	2 cut(s)	77, 337
Bsp143I	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
Bsp19I	CCATGG	1 cut(s)	518
BspACI	CCGC	1 cut(s)	101
BspANI	GGCC	2 cut(s)	238, 426
BspCNI	CTCAG	5 cut(s)	48, 89, 136, 286, 357
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	105, 111, 169, 336
BspPI	GGATC	3 cut(s)	162, 175, 463
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	103, 334
BsrFI	RCCGGY	2 cut(s)	106, 241
BsrI	ACTGG	2 cut(s)	114, 500
BssAI	RCCGGY	2 cut(s)	106, 241
BssECI	CCNNGG	2 cut(s)	302, 518
BssMI	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
BssNI	GRCGYC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	421
Bst6I	CTCTTC	2 cut(s)	84, 153
BstACI	GRCGYC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	85, 96
BstDEI	CTNAG	5 cut(s)	56, 76, 144, 294, 344
BstDSI	CCRYGG	1 cut(s)	518
BstF5I	GGATG	3 cut(s)	334, 504, 536
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	6 cut(s)	28, 170, 251, 358, 385, 458
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	70, 301
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	110
BstX2I	RGATCY	3 cut(s)	167, 248, 382
BstYI	RGATCY	3 cut(s)	167, 248, 382
BsuRI	GGCC	2 cut(s)	238, 426
BtgI	CCRYGG	1 cut(s)	518
BtsCI	GGATG	3 cut(s)	334, 504, 536
BtsIMutI	CAGTG	2 cut(s)	180, 417
Cac8I	GCNNGC	2 cut(s)	85, 96
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	2 cut(s)	106, 241
Csp6I	GTAC	1 cut(s)	117
CspAI	ACCGGT	1 cut(s)	241
CviAII	CATG	5 cut(s)	325, 406, 519, 532, 559
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	5 cut(s)	56, 76, 144, 294, 344
DinI	GGCGCC	1 cut(s)	105
DpnI	GATC	6 cut(s)	27, 169, 250, 357, 384, 457
DpnII	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
DraI	TTTAAA	2 cut(s)	123, 412
EaeI	YGGCCR	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	84, 153
EarI	CTCTTC	2 cut(s)	84, 153
Eco130I	CCWWGG	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	254, 380
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	77
EgeI	GGCGCC	1 cut(s)	105
EheI	GGCGCC	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	518
FaeI	CATG	5 cut(s)	328, 409, 522, 535, 562
FaiI	YATR	9 cut(s)	18, 312, 326, 407, 465, 520, 533, 560, 598
FatI	CATG	5 cut(s)	324, 405, 518, 531, 558
Fnu4HI	GCNGC	2 cut(s)	99, 102
FokI	GGATG	3 cut(s)	341, 511, 523
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	99, 102
FspBI	CTAG	4 cut(s)	276, 398, 503, 576
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	99, 102
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	238, 426
HapII	CCGG	3 cut(s)	71, 107, 242
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	104
Hin1II	CATG	5 cut(s)	328, 409, 522, 535, 562
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	3 cut(s)	298, 401, 555
HpaII	CCGG	3 cut(s)	71, 107, 242
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	6 cut(s)	79, 248, 347, 360, 460, 571
Hpy188III	TCNNGA	2 cut(s)	398, 559
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	3 cut(s)	278, 355, 437
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	3 cut(s)	83, 215, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	5 cut(s)	56, 76, 144, 294, 344
Hsp92I	GRCGYC	1 cut(s)	104
Hsp92II	CATG	5 cut(s)	328, 409, 522, 535, 562
HspAI	GCGC	1 cut(s)	104
KasI	GGCGCC	1 cut(s)	103
Kzo9I	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	110
LweI	GCATC	3 cut(s)	70, 178, 489
MaeI	CTAG	4 cut(s)	276, 398, 503, 576
MaeIII	GTNAC	1 cut(s)	491
MalI	GATC	6 cut(s)	27, 169, 250, 357, 384, 457
MboI	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
MboII	GAAGA	4 cut(s)	101, 167, 170, 271
MflI	RGATCY	3 cut(s)	167, 248, 382
MhlI	GDGCHC	2 cut(s)	77, 337
MlsI	TGGCCA	1 cut(s)	238
MluCI	AATT	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	238
Mly113I	GGCGCC	1 cut(s)	104
MlyI	GAGTC	2 cut(s)	292, 410
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	9 cut(s)	44, 50, 170, 219, 283, 353, 432, 472, 572
Mox20I	TGGCCA	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	238
MseI	TTAA	3 cut(s)	30, 122, 411
Msp20I	TGGCCA	1 cut(s)	238
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	3 cut(s)	71, 107, 242
MspR9I	CCNGG	2 cut(s)	72, 303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	212
NarI	GGCGCC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	518
NdeII	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
NlaIII	CATG	5 cut(s)	328, 409, 522, 535, 562
NlaIV	GGNNCC	4 cut(s)	105, 111, 169, 336
NmuCI	GTSAC	1 cut(s)	491
PagI	TCATGA	1 cut(s)	558
PciSI	GCTCTTC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	555
PinAI	ACCGGT	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	100, 103
PleI	GAGTC	2 cut(s)	292, 409
PluTI	GGCGCC	1 cut(s)	107
PpsI	GAGTC	2 cut(s)	292, 409
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	4 cut(s)	105, 111, 169, 336
PsuI	RGATCY	3 cut(s)	167, 248, 382
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	30, 122, 411
SatI	GCNGC	2 cut(s)	99, 102
Sau3AI	GATC	6 cut(s)	25, 167, 248, 355, 382, 455
ScaI	AGTACT	1 cut(s)	118
SchI	GAGTC	2 cut(s)	292, 410
ScrFI	CCNGG	2 cut(s)	72, 303
SduI	GDGCHC	2 cut(s)	77, 337
SetI	ASST	8 cut(s)	36, 42, 57, 340, 345, 366, 472, 577
SfaNI	GCATC	3 cut(s)	70, 178, 489
SfcI	CTRYAG	1 cut(s)	420
SfoI	GGCGCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	103
SspMI	CTAG	4 cut(s)	276, 398, 503, 576
StyD4I	CCNGG	2 cut(s)	70, 301
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	1 cut(s)	421
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	3 cut(s)	30, 122, 411
Tru9I	TTAA	3 cut(s)	30, 122, 411
TscAI	CASTG	2 cut(s)	187, 424
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	2 cut(s)	520, 575
TspRI	CASTG	2 cut(s)	187, 424
XapI	RAATTY	1 cut(s)	413
XbaI	TCTAGA	1 cut(s)	397
XspI	CTAG	4 cut(s)	276, 398, 503, 576
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.