Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

19832159 .. 19832905

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGACCAGCTAAATTTCAAGGCAACTGAGCTAAGATTAGGGTTGCCTGGAAGCTCTGAAGAGCATGAGAACAAAAAAGCAGCAACGTCTCCTCCTATAGCCAAGAATAACAAGAGGGCTTCGCCGGATTCAGCGGCTGAGGAGTGCAGTACAAGTTCTAATCTCATAGATGCCCCTCCCACCAAGACACAGGTAGTAGGGTGGCCTCCAATCAGATCTTACAGGAAAAACAGTTTGCAACTGCGAGAGGCGTACGTGAAAGTAAGTGTCGACGGAGCTCCTTATCTGAGGAAGATTGATCTCAAGGTTTACAATAGCTACCCGGAACTCATCAAGGCCTTAGAGAAGATGTTCAACCTAGCCAATATTATGGCTTCAGATCGATCCGATTTTGCTCCGACTTATGAAGACAAAGACGGTGACTGGATGCTTGTTGGAGATGTGCCATGGAATATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCTGAAGCCAGAGGATTGAGTACTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

177

Amino Acids

19.7

Weight (kDa)

8.37

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	2 cut(s)	381, 505
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	3 cut(s)	81, 363, 522
AfaI	GTAC	3 cut(s)	154, 257, 520
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	22, 358
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	13, 34, 57, 281, 321
AluI	AGCT	5 cut(s)	13, 34, 57, 281, 321
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	2 cut(s)	381, 505
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	206, 339
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	12, 417
Bbv12I	GWGCWC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	51
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	84, 138
BlsI	GCNGC	2 cut(s)	85, 139
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	51, 326
BmrFI	CCNGG	2 cut(s)	51, 326
BmsI	GCATC	2 cut(s)	163, 420
BpiI	GAAGAC	2 cut(s)	12, 417
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	1 cut(s)	326
Bsa29I	ATCGAT	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	449
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	431
BseBI	CCWGG	1 cut(s)	51
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	435
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	4 cut(s)	21, 132, 281, 473
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	84, 158
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	208, 341
BshVI	ATCGAT	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	128, 326
BsiWI	CGTACG	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	208, 341
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp143I	GATC	5 cut(s)	218, 301, 382, 386, 497
Bsp19I	CCATGG	1 cut(s)	449
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	208, 341
BspCNI	CTCAG	4 cut(s)	22, 133, 282, 474
BspDI	ATCGAT	1 cut(s)	385
BspHI	TCATGA	1 cut(s)	489
BspPI	GGATC	2 cut(s)	381, 505
BspQI	GCTCTTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	5 cut(s)	218, 301, 382, 386, 497
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	236, 422
Bst6I	CTCTTC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	6 cut(s)	30, 35, 141, 290, 343, 482
BstDSI	CCRYGG	1 cut(s)	449
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	5 cut(s)	221, 304, 385, 389, 500
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	5 cut(s)	218, 301, 382, 386, 497
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	2 cut(s)	49, 324
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	2 cut(s)	12, 417
BstX2I	RGATCY	2 cut(s)	218, 497
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	2 cut(s)	218, 497
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	208, 341
BsuTUI	ATCGAT	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	449
BtsCI	GGATG	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	489
ClaI	ATCGAT	1 cut(s)	385
Csp6I	GTAC	3 cut(s)	153, 256, 519
CviAII	CATG	3 cut(s)	68, 450, 490
CviQI	GTAC	3 cut(s)	153, 256, 519
DdeI	CTNAG	6 cut(s)	30, 35, 141, 290, 343, 482
DpnI	GATC	5 cut(s)	220, 303, 384, 388, 499
DpnII	GATC	5 cut(s)	218, 301, 382, 386, 497
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	449
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	3 cut(s)	81, 363, 522
EcoICRI	GAGCTC	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	3 cut(s)	71, 453, 493
FaiI	YATR	8 cut(s)	69, 101, 170, 374, 408, 451, 458, 491
FatI	CATG	3 cut(s)	67, 449, 489
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	84, 138
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	84, 138
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	84, 138
HaeIII	GGCC	2 cut(s)	208, 341
HapII	CCGG	2 cut(s)	128, 326
Hin1II	CATG	3 cut(s)	71, 453, 493
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	131, 486
HpaII	CCGG	2 cut(s)	128, 326
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	2 cut(s)	274, 313
Hpy188I	TCNGA	8 cut(s)	61, 218, 291, 382, 391, 402, 502, 530
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	2 cut(s)	274, 313
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	2 cut(s)	236, 422
HpyCH4IV	ACGT	2 cut(s)	89, 258
HpyCH4V	TGCA	3 cut(s)	150, 241, 474
HpyF3I	CTNAG	6 cut(s)	30, 35, 141, 290, 343, 482
HpySE526I	ACGT	2 cut(s)	89, 258
Hsp92II	CATG	3 cut(s)	71, 453, 493
Kzo9I	GATC	5 cut(s)	218, 301, 382, 386, 497
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	278, 286, 403
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	2 cut(s)	163, 420
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	89, 258
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	5 cut(s)	220, 303, 384, 388, 499
MboI	GATC	5 cut(s)	218, 301, 382, 386, 497
MboII	GAAGA	6 cut(s)	17, 74, 307, 361, 422, 459
MflI	RGATCY	2 cut(s)	218, 497
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	418, 425
MnlI	CCTC	8 cut(s)	105, 111, 136, 189, 219, 244, 285, 503
MroXI	GAANNNNTTC	1 cut(s)	353
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	128, 326
MspR9I	CCNGG	2 cut(s)	51, 326
MvaI	CCWGG	1 cut(s)	51
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	449
NdeII	GATC	5 cut(s)	218, 301, 382, 386, 497
NlaIII	CATG	3 cut(s)	71, 453, 493
NmuCI	GTSAC	1 cut(s)	422
PagI	TCATGA	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	131, 486
Pfl23II	CGTACG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	85, 139
Ppu21I	YACGTR	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspLI	CGTACG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	218, 497
RsaI	GTAC	3 cut(s)	154, 257, 520
RsaNI	GTAC	3 cut(s)	153, 256, 519
SacI	GAGCTC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	57
SatI	GCNGC	2 cut(s)	84, 138
Sau3AI	GATC	5 cut(s)	218, 301, 382, 386, 497
ScaI	AGTACT	1 cut(s)	520
ScrFI	CCNGG	2 cut(s)	51, 326
SduI	GDGCHC	1 cut(s)	283
SfaNI	GCATC	2 cut(s)	163, 420
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	49, 324
StyI	CCWWGG	1 cut(s)	449
TaaI	ACNGT	2 cut(s)	236, 422
TaiI	ACGT	2 cut(s)	92, 261
TaqI	TCGA	2 cut(s)	273, 385
TasI	AATT	1 cut(s)	16
TatI	WGTACW	2 cut(s)	152, 518
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	131, 486
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	2 cut(s)	423, 506
TspGWI	ACGGA	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.