Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

28924800 .. 28926049

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1193000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGAAGACCAGCTAAATTTCAAGGCAACTGAGCTAAGATTAGGGTTGCCTGGAAGCTCTGAAGAGCCTGAGAACAAAAAAGCAGCACCGTCTCCTCCTATGGCTAAGAATAACAAGAGGGCTTCGCCGGATTCAGCGGCTGAGGAGTGCAGTACAAGTTCTGATCCCATAGATGTCCCTCCCACCAAGACACAGGTAGTAGGGTGGCCTCCAATCAGATCTTACAGGAAAAACAGTTTGCAACTGCGAGAGGCGTACGTGAAAGTAAGCGTCGACGGAGCTCCTTATCTGAGGAAGATTGATCTCAAGGTTTACAATAGCTACCCCGAACTCATCAAGGCCTTAGAGAAGATGTTCAACCTAGCCAATATTAATGGATCCGATTTTGCTCCGACATATGAAGACAAAGACGGCGACTGGATGCTTGTTGGAGATGTGCCATGGAATATGTTTGTTTCTTCCTGCAAAAGGCTGAGAATCATGAAGGGATCTGAAGCCAGAGGATTGAGCACTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

174

Amino Acids

19.29

Weight (kDa)

7.62

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	9 - 121	1.7e-26	AUX/IAA family
AUX_IAA	PF02309	124 - 170	1.3e-26	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	273
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	4 cut(s)	158, 372, 385, 496
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	2 cut(s)	81, 513
AfaI	GTAC	2 cut(s)	154, 257
AfiI	CCNNNNNNNGG	1 cut(s)	468
AgsI	TTSAA	2 cut(s)	22, 358
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	13, 34, 57, 281, 321
AluI	AGCT	5 cut(s)	13, 34, 57, 281, 321
Alw21I	GWGCWC	2 cut(s)	283, 512
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	4 cut(s)	158, 372, 385, 496
AlwNI	CAGNNNCTG	1 cut(s)	140
AoxI	GGCC	2 cut(s)	206, 339
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	16
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	12, 408
Bbv12I	GWGCWC	2 cut(s)	283, 512
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	427
BciT130I	CCWGG	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	84, 138
BlsI	GCNGC	2 cut(s)	85, 139
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	2 cut(s)	12, 408
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMII	CTCAG	5 cut(s)	21, 60, 132, 281, 464
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	84, 158
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	208, 341
BsiHKAI	GWGCWC	2 cut(s)	283, 512
BsiSI	CCGG	1 cut(s)	128
BsiWI	CGTACG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	1 cut(s)	96
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	208, 341
Bsp1286I	GDGCHC	2 cut(s)	283, 512
Bsp143I	GATC	5 cut(s)	163, 218, 301, 377, 488
Bsp19I	CCATGG	1 cut(s)	440
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	208, 341
BspCNI	CTCAG	5 cut(s)	22, 61, 133, 282, 465
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	379
BspPI	GGATC	4 cut(s)	158, 372, 385, 496
BspQI	GCTCTTC	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	5 cut(s)	163, 218, 301, 377, 488
BssT1I	CCWWGG	1 cut(s)	440
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	90, 236
Bst6I	CTCTTC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	8 cut(s)	30, 35, 69, 105, 141, 290, 343, 473
BstDSI	CCRYGG	1 cut(s)	440
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	426
BstKTI	GATC	5 cut(s)	166, 221, 304, 380, 491
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	5 cut(s)	163, 218, 301, 377, 488
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	2 cut(s)	12, 408
BstX2I	RGATCY	3 cut(s)	218, 377, 488
BstYI	RGATCY	3 cut(s)	218, 377, 488
BsuRI	GGCC	2 cut(s)	208, 341
BtgI	CCRYGG	1 cut(s)	440
BtsCI	GGATG	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	140
CciI	TCATGA	1 cut(s)	480
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	153, 256
CviAII	CATG	2 cut(s)	441, 481
CviQI	GTAC	2 cut(s)	153, 256
DdeI	CTNAG	8 cut(s)	30, 35, 69, 105, 141, 290, 343, 473
DpnI	GATC	5 cut(s)	165, 220, 303, 379, 490
DpnII	GATC	5 cut(s)	163, 218, 301, 377, 488
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	281
Eco57I	CTGAAG	2 cut(s)	81, 513
EcoICRI	GAGCTC	1 cut(s)	281
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	283
ErhI	CCWWGG	1 cut(s)	440
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	2 cut(s)	444, 484
FaiI	YATR	7 cut(s)	101, 170, 397, 399, 442, 449, 482
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	440, 480
FauNDI	CATATG	1 cut(s)	397
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	84, 138
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	283
Fsp4HI	GCNGC	2 cut(s)	84, 138
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	84, 138
HaeIII	GGCC	2 cut(s)	208, 341
HapII	CCGG	1 cut(s)	128
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	444, 484
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	131, 477
HpaII	CCGG	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	274, 313
Hpy188I	TCNGA	8 cut(s)	61, 163, 218, 291, 382, 393, 493, 521
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	2 cut(s)	274, 313
Hpy99I	CGWCG	2 cut(s)	275, 278
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	2 cut(s)	90, 236
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	150, 241, 465
HpyF3I	CTNAG	8 cut(s)	30, 35, 69, 105, 141, 290, 343, 473
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	2 cut(s)	444, 484
Kzo9I	GATC	5 cut(s)	163, 218, 301, 377, 488
LguI	GCTCTTC	1 cut(s)	57
LmnI	GCTCC	3 cut(s)	278, 286, 394
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	1 cut(s)	258
MalI	GATC	5 cut(s)	165, 220, 303, 379, 490
MboI	GATC	5 cut(s)	163, 218, 301, 377, 488
MboII	GAAGA	6 cut(s)	17, 74, 307, 361, 413, 450
MflI	RGATCY	3 cut(s)	218, 377, 488
MhlI	GDGCHC	2 cut(s)	283, 512
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	409, 416
MnlI	CCTC	8 cut(s)	105, 111, 136, 189, 219, 244, 285, 494
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	440
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	5 cut(s)	163, 218, 301, 377, 488
NlaIII	CATG	2 cut(s)	444, 484
NlaIV	GGNNCC	1 cut(s)	379
PagI	TCATGA	1 cut(s)	480
PceI	AGGCCT	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	2 cut(s)	131, 477
Pfl23II	CGTACG	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	85, 139
Ppu21I	YACGTR	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspLI	CGTACG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	3 cut(s)	218, 377, 488
RsaI	GTAC	2 cut(s)	154, 257
RsaNI	GTAC	2 cut(s)	153, 256
SacI	GAGCTC	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	84, 138
Sau3AI	GATC	5 cut(s)	163, 218, 301, 377, 488
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	283, 512
SetI	ASST	9 cut(s)	15, 36, 59, 198, 261, 283, 312, 323, 363
SfaNI	GCATC	1 cut(s)	411
SgrDI	CGTCGACG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	1 cut(s)	362
SstI	GAGCTC	1 cut(s)	283
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	440
TaaI	ACNGT	2 cut(s)	90, 236
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	2 cut(s)	131, 477
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	414, 497
TspGWI	ACGGA	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.