Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

17431509 .. 17432788

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00177840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGAAGGCTCAGTGAGCTATGAAAACCATGACGAGCAGCTCAACTTCAAGGCAACTGAGCTCAGATTGGGATTGCCCGGAAGCGGGATGGAAGAATCAACTGCATCACCTCCTCCTAATACTAAGAAGAGGGCTTCACCGGATCAAGATTTGGTGGATGAGGAGTGCAGGTCGTCTACTACCGACGATGAGACACCGGACTTTACTTCCCGTCCCACCAAGACACAAGTAGTTGGATGGCCTCCGATCAGATCTTACCGGAAAAACGTTATGCAAGCATTCGTGAAAGTAAGCGTAGACGGAGCTCCTTACCTGAGGAAGATTGATATCAAGGTATACAAGAGCTACCCTGAACTCCTCAAGTCCTTACAGGACATGTTCAAGCTAACCATTGGTAGCTACTCAGAGAGAGAGAAGGCTACAATGGATCTGAATTTGCTCCTACTTATCAAGACAAAGATGGTGACTGGATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

5.92

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	18 - 92	1.1e-12	AUX/IAA family
AUX_IAA	PF02309	92 - 139	4.9e-14	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	159
AccI	GTMKAC	3 cut(s)	176, 297, 336
AciI	CCGC	1 cut(s)	84
AclI	AACGTT	1 cut(s)	267
AclWI	GGATC	2 cut(s)	150, 435
AcsI	RAATTY	1 cut(s)	433
AfiI	CCNNNNNNNGG	2 cut(s)	83, 84
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	49, 382
AluBI	AGCT	7 cut(s)	18, 40, 61, 305, 345, 385, 399
AluI	AGCT	7 cut(s)	18, 40, 61, 305, 345, 385, 399
Alw21I	GWGCWC	2 cut(s)	63, 307
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	150, 435
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	99, 129, 475
AxyI	CCTNAGG	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	63, 307
Bbv12I	GWGCWC	2 cut(s)	63, 307
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	3 cut(s)	82, 231, 454
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	251
BisI	GCNGC	1 cut(s)	38
BlsI	GCNGC	1 cut(s)	39
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	113, 461
BpuEI	CTTGAG	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	326
BsaWI	WCCGGW	3 cut(s)	139, 196, 258
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 84
Bse1I	ACTGG	1 cut(s)	472
Bse21I	CCTNAGG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	326
BseGI	GGATG	4 cut(s)	93, 163, 242, 476
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	2 cut(s)	83, 84
BseMII	CTCAG	5 cut(s)	24, 48, 76, 305, 417
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	3 cut(s)	102, 176, 347
BseXI	GCAGC	1 cut(s)	49
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	63, 307
BsiSI	CCGG	4 cut(s)	78, 140, 197, 259
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	83, 84
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	278
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	2 cut(s)	63, 307
Bsp143I	GATC	4 cut(s)	142, 246, 251, 427
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	5 cut(s)	23, 49, 75, 306, 416
BspMI	ACCTGC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	150, 435
BsrI	ACTGG	1 cut(s)	472
BssMI	GATC	4 cut(s)	142, 246, 251, 427
BssNAI	GTATAC	1 cut(s)	337
Bst1107I	GTATAC	1 cut(s)	337
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	6 cut(s)	10, 57, 62, 123, 314, 403
BstF5I	GGATG	4 cut(s)	93, 163, 242, 476
BstKTI	GATC	4 cut(s)	145, 249, 254, 430
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	142, 246, 251, 427
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	49
BstX2I	RGATCY	2 cut(s)	251, 427
BstYI	RGATCY	2 cut(s)	251, 427
BstZ17I	GTATAC	1 cut(s)	337
Bsu36I	CCTNAGG	1 cut(s)	314
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	4 cut(s)	93, 163, 242, 476
BtsIMutI	CAGTG	1 cut(s)	18
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	276
CviAII	CATG	2 cut(s)	29, 376
DdeI	CTNAG	6 cut(s)	10, 57, 62, 123, 314, 403
DpnI	GATC	4 cut(s)	144, 248, 253, 429
DpnII	GATC	4 cut(s)	142, 246, 251, 427
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Ecl136II	GAGCTC	2 cut(s)	61, 305
Eco24I	GRGCYC	2 cut(s)	63, 307
Eco32I	GATATC	1 cut(s)	328
Eco53kI	GAGCTC	2 cut(s)	61, 305
Eco81I	CCTNAGG	1 cut(s)	314
EcoICRI	GAGCTC	2 cut(s)	61, 305
EcoRV	GATATC	1 cut(s)	328
EcoT38I	GRGCYC	2 cut(s)	63, 307
FaeI	CATG	2 cut(s)	32, 379
FaiI	YATR	5 cut(s)	21, 30, 272, 337, 377
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	28, 375
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	3 cut(s)	176, 297, 336
Fnu4HI	GCNGC	1 cut(s)	38
FokI	GGATG	3 cut(s)	100, 170, 249
FriOI	GRGCYC	2 cut(s)	63, 307
Fsp4HI	GCNGC	1 cut(s)	38
FspBI	CTAG	1 cut(s)	475
GluI	GCNGC	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	4 cut(s)	78, 140, 197, 259
Hin1II	CATG	2 cut(s)	32, 379
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	4 cut(s)	78, 140, 197, 259
HphI	GGTGA	3 cut(s)	99, 129, 475
Hpy166II	GTNNAC	3 cut(s)	177, 298, 337
Hpy188I	TCNGA	5 cut(s)	65, 246, 251, 406, 432
Hpy188III	TCNNGA	3 cut(s)	146, 283, 451
Hpy8I	GTNNAC	3 cut(s)	177, 298, 337
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	104, 168, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
HpyF3I	CTNAG	6 cut(s)	10, 57, 62, 123, 314, 403
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	32, 379
Kzo9I	GATC	4 cut(s)	142, 246, 251, 427
LmnI	GCTCC	3 cut(s)	302, 310, 444
LpnPI	CCDG	9 cut(s)	91, 153, 154, 210, 272, 326, 356, 363, 453
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	2 cut(s)	113, 461
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	4 cut(s)	144, 248, 253, 429
MboI	GATC	4 cut(s)	142, 246, 251, 427
MboII	GAAGA	3 cut(s)	104, 139, 331
MflI	RGATCY	2 cut(s)	251, 427
MhlI	GDGCHC	2 cut(s)	63, 307
MluCI	AATT	1 cut(s)	433
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	120, 123, 123, 154, 252, 309, 368
MspI	CCGG	4 cut(s)	78, 140, 197, 259
MspR9I	CCNGG	1 cut(s)	78
Mva1269I	GAATGC	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	15
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	4 cut(s)	142, 246, 251, 427
NlaIII	CATG	2 cut(s)	32, 379
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PctI	GAATGC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	1 cut(s)	39
PscI	ACATGT	1 cut(s)	375
Psp124BI	GAGCTC	2 cut(s)	63, 307
Psp1406I	AACGTT	1 cut(s)	267
PsuI	RGATCY	2 cut(s)	251, 427
SacI	GAGCTC	2 cut(s)	63, 307
SatI	GCNGC	1 cut(s)	38
Sau3AI	GATC	4 cut(s)	142, 246, 251, 427
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	2 cut(s)	63, 307
SfaNI	GCATC	2 cut(s)	113, 461
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	1 cut(s)	433
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	475
SstI	GAGCTC	2 cut(s)	63, 307
StyD4I	CCNGG	1 cut(s)	76
TaiI	ACGT	1 cut(s)	270
TasI	AATT	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	315
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	3 cut(s)	176, 297, 336
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.