Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

1622681 .. 1624057

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g02870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCATTCCAAGCAGAAGATCTCAACCTTGAAGCCACCGAGCTCCGATTAGGCCTCCCCGGCACCAAGGAAACCGAGCAACAAAAGACCAACAACAAAAGAGCATTGCCAGTTGAGCATGAGTCCAATGCTTCTTCAGCTCCCAAGCCTCCTCCTTCCAAAGCACAAGTAGTTGGATGGCCACCGGTGAAATCATACCGGAAAAACTGTTTCGAGGCGAAGAAAACCGAGGGAGAAAGCGGTGGGATGTTCGTGAAAGTCAGCATGGATGGAGCTCCTTACCTGAGAAAGATGGACCTGAAGGTTTACAAAGGATATCCAGAGCTGCTCAAGGCCTTGGAGGAGATGTTCAAGTTCAAGGTTGGTGAATATTGTGAGAAGGAACTAGGGTACAACAACAGATCCGAGTTTGTGCCAACTTATGAAGACAAAGATGGGGACTGGATGCTTCTTGGAGATGTTCCATGGGAGATGTTCTTCACTTCATGCAAGAGGCTGAGAATCATGAAAGGTTCAGAAGCCAAAGGCTTAGGTTGTGCGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

182

Amino Acids

20.45

Weight (kDa)

7.58

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	28 - 178	1.7e-55	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AciI	CCGC	2 cut(s)	240, 539
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	120, 320
AfaI	GTAC	1 cut(s)	392
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	32, 352, 358
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	4 cut(s)	43, 140, 275, 325
AluI	AGCT	4 cut(s)	43, 140, 275, 325
Alw21I	GWGCWC	2 cut(s)	45, 277
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	3 cut(s)	52, 179, 333
ApeKI	GCWGC	1 cut(s)	325
AsiGI	ACCGGT	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	199, 377
AvaII	GGWCC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	45, 277
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	2 cut(s)	45, 277
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	4 cut(s)	171, 263, 286, 428
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	386
BglI	GCCNNNNNGGC	1 cut(s)	60
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	529
BpuEI	CTTGAG	1 cut(s)	314
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	5 cut(s)	58, 66, 228, 336, 464
BsaWI	WCCGGW	2 cut(s)	184, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	2 cut(s)	110, 446
Bse3DI	GCAATG	1 cut(s)	104
BseDI	CCNNGG	5 cut(s)	58, 66, 228, 336, 464
BseGI	GGATG	4 cut(s)	182, 252, 274, 450
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	275, 488
BseNI	ACTGG	2 cut(s)	110, 446
BseRI	GAGGAG	2 cut(s)	141, 356
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	3 cut(s)	54, 181, 335
BshNI	GGYRCC	1 cut(s)	62
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	45, 277
BsiSI	CCGG	3 cut(s)	60, 185, 199
BslFI	GGGAC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	5
BsnI	GGCC	3 cut(s)	54, 181, 335
Bsp1286I	GDGCHC	2 cut(s)	45, 277
Bsp143I	GATC	2 cut(s)	19, 401
Bsp19I	CCATGG	1 cut(s)	464
BspACI	CCGC	2 cut(s)	240, 539
BspANI	GGCC	3 cut(s)	54, 181, 335
BspCNI	CTCAG	2 cut(s)	276, 489
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	2 cut(s)	110, 446
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	5 cut(s)	58, 66, 228, 336, 464
BssMI	GATC	2 cut(s)	19, 401
BssT1I	CCWWGG	3 cut(s)	66, 336, 464
Bst4CI	ACNGT	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	284, 497, 529
BstDSI	CCRYGG	1 cut(s)	464
BstF5I	GGATG	4 cut(s)	182, 252, 274, 450
BstKTI	GATC	2 cut(s)	22, 404
BstMBI	GATC	2 cut(s)	19, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 60, 115, 137
BstSCI	CCNGG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	19, 401
BstYI	RGATCY	2 cut(s)	19, 401
BsuRI	GGCC	3 cut(s)	54, 181, 335
BtgI	CCRYGG	1 cut(s)	464
BtsCI	GGATG	4 cut(s)	182, 252, 274, 450
CciI	TCATGA	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	5 cut(s)	119, 265, 465, 486, 505
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	3 cut(s)	284, 497, 529
DpnI	GATC	2 cut(s)	21, 403
DpnII	GATC	2 cut(s)	19, 401
EaeI	YGGCCR	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	43, 275
Eco130I	CCWWGG	3 cut(s)	66, 336, 464
Eco147I	AGGCCT	2 cut(s)	54, 335
Eco24I	GRGCYC	2 cut(s)	45, 277
Eco32I	GATATC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	2 cut(s)	43, 275
Eco57I	CTGAAG	2 cut(s)	120, 320
EcoICRI	GAGCTC	2 cut(s)	43, 275
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	3 cut(s)	66, 336, 464
EcoT38I	GRGCYC	2 cut(s)	45, 277
ErhI	CCWWGG	3 cut(s)	66, 336, 464
FaeI	CATG	5 cut(s)	122, 268, 468, 489, 508
FaiI	YATR	8 cut(s)	120, 196, 266, 423, 466, 487, 506, 544
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	5 cut(s)	118, 264, 464, 485, 504
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	4 cut(s)	189, 259, 281, 457
FriOI	GRGCYC	2 cut(s)	45, 277
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	54, 181, 335
HapII	CCGG	3 cut(s)	60, 185, 199
Hin1II	CATG	5 cut(s)	122, 268, 468, 489, 508
HinfI	GANTC	2 cut(s)	122, 501
HpaII	CCGG	3 cut(s)	60, 185, 199
HphI	GGTGA	2 cut(s)	199, 377
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	47, 406, 517
Hpy188III	TCNNGA	3 cut(s)	253, 320, 505
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	165, 295, 373
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	1 cut(s)	489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 60, 115, 137
HpyF3I	CTNAG	3 cut(s)	284, 497, 529
Hsp92II	CATG	5 cut(s)	122, 268, 468, 489, 508
Kzo9I	GATC	2 cut(s)	19, 401
LmnI	GCTCC	4 cut(s)	48, 145, 272, 280
LpnPI	CCDG	8 cut(s)	73, 123, 198, 212, 296, 311, 333, 427
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	1 cut(s)	386
MalI	GATC	2 cut(s)	21, 403
MboI	GATC	2 cut(s)	19, 401
MboII	GAAGA	5 cut(s)	29, 126, 232, 437, 469
MflI	RGATCY	2 cut(s)	19, 401
MhlI	GDGCHC	2 cut(s)	45, 277
MlsI	TGGCCA	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	7 cut(s)	65, 159, 162, 208, 223, 334, 486
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
Msp20I	TGGCCA	1 cut(s)	181
MspI	CCGG	3 cut(s)	60, 185, 199
MspR9I	CCNGG	1 cut(s)	60
Mva1269I	GAATGC	1 cut(s)	5
MwoI	GCNNNNNNNGC	4 cut(s)	11, 60, 115, 137
NciI	CCSGG	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	464
NdeII	GATC	2 cut(s)	19, 401
NlaIII	CATG	5 cut(s)	122, 268, 468, 489, 508
NlaIV	GGNNCC	1 cut(s)	64
PagI	TCATGA	1 cut(s)	504
PceI	AGGCCT	2 cut(s)	54, 335
PctI	GAATGC	1 cut(s)	5
PfeI	GAWTC	1 cut(s)	501
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp124BI	GAGCTC	2 cut(s)	45, 277
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	2 cut(s)	19, 401
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacI	GAGCTC	2 cut(s)	45, 277
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	19, 401
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	45, 277
SfaNI	GCATC	1 cut(s)	435
SgrAI	CRCCGGYG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SseBI	AGGCCT	2 cut(s)	54, 335
SsiI	CCGC	2 cut(s)	240, 539
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	45, 277
StuI	AGGCCT	2 cut(s)	54, 335
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	3 cut(s)	66, 336, 464
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	501
TseI	GCWGC	1 cut(s)	325
TspDTI	ATGAA	3 cut(s)	438, 474, 521
VpaK11BI	GGWCC	1 cut(s)	295
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.