Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

29575247 .. 29576745

Gene Structure 1499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G343700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGCAATGTTTGAGCAGGATCTCAACTTTGAAGCCACAGAGCTTAGATTAGGCCTCCCAGGCACCAAGGAGCCTGAGCACAATACATGTTCTAGTGCTTTAATCAACAGGAGCAACAAAAGACCATTGCCAGCTGACATGAACGAAGACAAGTATTCTTCAGCTGCCAAAAGATGTGACCAACAAATTTCTCAGCCTCCTCCCTCCATGGCACAAGTAGTGGGGTGGCCACCAGTGCGATCGTACCGGAAAAATTGCTTGCAAGCAAAGAAAACAGAGGCGGAGGGTTGTGGGATTTATGTGAAAATAAGCATGGATGGAGCTCCATATCTTAGAAAGATGGATCTGAAGGTGTACAGAGGATATCCAGAGCTGCTTAAAGCCCTGGAAGACATGTTCAAGTTCAAAGTTGGTGATTATTGTGAGAAGGATTTGGGGTACAATAACAGATCAGAATTTGTGCCTACATATGAAGACAAAGATGGGGATTGGATGCTGCTTGGAGATGTTCCATGGGAAATGTTCATCACTTCGTGCAAGAGGTTGAGAATCATGAAGGGTTCAGAAGCTAAAGGCTTAGGCTGCGCGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

198

Amino Acids

22.38

Weight (kDa)

7.49

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccII	CGCG	1 cut(s)	587
AciI	CCGC	1 cut(s)	281
AclWI	GGATC	2 cut(s)	27, 351
AcoI	YGGCCR	1 cut(s)	227
AcsI	RAATTY	2 cut(s)	186, 455
AcuI	CTGAAG	2 cut(s)	144, 368
AdeI	CACNNNGTG	1 cut(s)	534
AfaI	GTAC	3 cut(s)	245, 356, 440
AflIII	ACRYGT	2 cut(s)	86, 393
AgsI	TTSAA	3 cut(s)	32, 400, 406
AjnI	CCWGG	2 cut(s)	58, 384
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	6 cut(s)	43, 134, 164, 323, 373, 569
AluI	AGCT	6 cut(s)	43, 134, 164, 323, 373, 569
Alw21I	GWGCWC	2 cut(s)	81, 325
AlwI	GGATC	2 cut(s)	27, 351
AoxI	GGCC	2 cut(s)	52, 227
ApeKI	GCWGC	4 cut(s)	164, 373, 496, 582
ApoI	RAATTY	2 cut(s)	186, 455
AspLEI	GCGC	2 cut(s)	587, 589
AsuHPI	GGTGA	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	325
BbsI	GAAGAC	3 cut(s)	153, 396, 480
Bbv12I	GWGCWC	2 cut(s)	81, 325
BbvI	GCAGC	4 cut(s)	151, 360, 483, 569
BccI	CCATC	3 cut(s)	311, 334, 476
BciT130I	CCWGG	2 cut(s)	60, 386
BfaI	CTAG	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	4 cut(s)	165, 374, 497, 583
BlsI	GCNGC	4 cut(s)	166, 375, 498, 584
Bme1390I	CCNGG	2 cut(s)	60, 386
BmiI	GGNNCC	2 cut(s)	64, 72
BmrFI	CCNGG	2 cut(s)	60, 386
BmsI	GCATC	1 cut(s)	483
BpiI	GAAGAC	3 cut(s)	153, 396, 480
Bpu10I	CCTNAGC	2 cut(s)	75, 577
BsaJI	CCNNGG	5 cut(s)	58, 66, 207, 384, 512
BsaWI	WCCGGW	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	12, 125
BseBI	CCWGG	2 cut(s)	60, 386
BseDI	CCNNGG	5 cut(s)	58, 66, 207, 384, 512
BseGI	GGATG	2 cut(s)	322, 498
BseMI	GCAATG	2 cut(s)	12, 125
BseMII	CTCAG	2 cut(s)	66, 206
BseNI	ACTGG	1 cut(s)	233
BsePI	GCGCGC	1 cut(s)	585
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	4 cut(s)	151, 360, 483, 569
Bsh1236I	CGCG	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	54, 229
BshNI	GGYRCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	242
BsiHKAI	GWGCWC	2 cut(s)	81, 325
BsiSI	CCGG	1 cut(s)	247
BsnI	GGCC	2 cut(s)	54, 229
Bsp1286I	GDGCHC	2 cut(s)	81, 325
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	4 cut(s)	19, 239, 343, 449
Bsp19I	CCATGG	2 cut(s)	207, 512
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	2 cut(s)	54, 229
BspCNI	CTCAG	2 cut(s)	67, 205
BspFNI	CGCG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	552
BspLI	GGNNCC	2 cut(s)	64, 72
BspPI	GGATC	2 cut(s)	27, 351
BspT107I	GGYRCC	1 cut(s)	62
BsrDI	GCAATG	2 cut(s)	12, 125
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	5 cut(s)	58, 66, 207, 384, 512
BssHII	GCGCGC	1 cut(s)	585
BssMI	GATC	4 cut(s)	19, 239, 343, 449
BssT1I	CCWWGG	3 cut(s)	66, 207, 512
Bst2UI	CCWGG	2 cut(s)	60, 386
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	132, 260, 264, 587
BstDEI	CTNAG	5 cut(s)	44, 75, 192, 332, 577
BstDSI	CCRYGG	2 cut(s)	207, 512
BstF5I	GGATG	2 cut(s)	322, 498
BstFNI	CGCG	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	587, 589
BstKTI	GATC	4 cut(s)	22, 242, 346, 452
BstMBI	GATC	4 cut(s)	19, 239, 343, 449
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 235, 582
BstNI	CCWGG	2 cut(s)	60, 386
BstNSI	RCATGY	2 cut(s)	90, 397
BstSCI	CCNGG	2 cut(s)	58, 384
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	4 cut(s)	151, 360, 483, 569
BstV2I	GAAGAC	3 cut(s)	153, 396, 480
BstX2I	RGATCY	2 cut(s)	19, 343
BstYI	RGATCY	2 cut(s)	19, 343
BsuRI	GGCC	2 cut(s)	54, 229
BtgI	CCRYGG	2 cut(s)	207, 512
BtsCI	GGATG	2 cut(s)	322, 498
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	132, 260, 264, 587
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	2 cut(s)	587, 589
Csp6I	GTAC	3 cut(s)	244, 355, 439
CviAII	CATG	7 cut(s)	87, 139, 208, 313, 394, 513, 553
CviQI	GTAC	3 cut(s)	244, 355, 439
DdeI	CTNAG	5 cut(s)	44, 75, 192, 332, 577
DpnI	GATC	4 cut(s)	21, 241, 345, 451
DpnII	GATC	4 cut(s)	19, 239, 343, 449
DraIII	CACNNNGTG	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	227
EciI	GGCGGA	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	323
Eco130I	CCWWGG	3 cut(s)	66, 207, 512
Eco147I	AGGCCT	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	325
Eco32I	GATATC	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	144, 368
EcoICRI	GAGCTC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	58, 384
EcoRV	GATATC	1 cut(s)	365
EcoT14I	CCWWGG	3 cut(s)	66, 207, 512
EcoT38I	GRGCYC	1 cut(s)	325
ErhI	CCWWGG	3 cut(s)	66, 207, 512
FaeI	CATG	7 cut(s)	90, 142, 211, 316, 397, 516, 556
FatI	CATG	7 cut(s)	86, 138, 207, 312, 393, 512, 552
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	4 cut(s)	165, 374, 497, 583
FokI	GGATG	2 cut(s)	329, 505
FriOI	GRGCYC	1 cut(s)	325
Fsp4HI	GCNGC	4 cut(s)	165, 374, 497, 583
FspBI	CTAG	1 cut(s)	93
GlaI	GCGC	2 cut(s)	586, 588
GluI	GCNGC	4 cut(s)	165, 374, 497, 583
HaeIII	GGCC	2 cut(s)	54, 229
HapII	CCGG	1 cut(s)	247
HhaI	GCGC	2 cut(s)	587, 589
Hin1II	CATG	7 cut(s)	90, 142, 211, 316, 397, 516, 556
Hin6I	GCGC	2 cut(s)	585, 587
HinP1I	GCGC	2 cut(s)	585, 587
HinfI	GANTC	1 cut(s)	549
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	348, 454, 565
Hpy188III	TCNNGA	2 cut(s)	368, 553
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	343, 421, 550
HpyCH4V	TGCA	2 cut(s)	262, 537
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 235, 582
HpyF3I	CTNAG	5 cut(s)	44, 75, 192, 332, 577
Hsp92II	CATG	7 cut(s)	90, 142, 211, 316, 397, 516, 556
HspAI	GCGC	2 cut(s)	585, 587
Kzo9I	GATC	4 cut(s)	19, 239, 343, 449
LmnI	GCTCC	4 cut(s)	70, 111, 320, 328
Lsp1109I	GCAGC	4 cut(s)	151, 360, 483, 569
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	4 cut(s)	21, 241, 345, 451
MboI	GATC	4 cut(s)	19, 239, 343, 449
MboII	GAAGA	4 cut(s)	150, 158, 401, 485
MflI	RGATCY	2 cut(s)	19, 343
MhlI	GDGCHC	2 cut(s)	81, 325
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	3 cut(s)	186, 253, 455
MluNI	TGGCCA	1 cut(s)	229
MnlI	CCTC	8 cut(s)	65, 207, 210, 214, 271, 277, 353, 534
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	2 cut(s)	101, 378
Msp20I	TGGCCA	1 cut(s)	229
MspA1I	CMGCKG	2 cut(s)	134, 164
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	2 cut(s)	60, 386
MvaI	CCWGG	2 cut(s)	60, 386
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	3 cut(s)	60, 235, 582
NcoI	CCATGG	2 cut(s)	207, 512
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	4 cut(s)	19, 239, 343, 449
NlaIII	CATG	7 cut(s)	90, 142, 211, 316, 397, 516, 556
NlaIV	GGNNCC	2 cut(s)	64, 72
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	90, 397
PagI	TCATGA	1 cut(s)	552
PauI	GCGCGC	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	54
PciI	ACATGT	2 cut(s)	86, 393
PfeI	GAWTC	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	166, 375, 498, 584
Ple19I	CGATCG	1 cut(s)	242
PscI	ACATGT	2 cut(s)	86, 393
Psp124BI	GAGCTC	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	58, 384
PspGI	CCWGG	2 cut(s)	58, 384
PspN4I	GGNNCC	2 cut(s)	64, 72
PsuI	RGATCY	2 cut(s)	19, 343
PteI	GCGCGC	1 cut(s)	585
PvuI	CGATCG	1 cut(s)	242
PvuII	CAGCTG	2 cut(s)	134, 164
RsaI	GTAC	3 cut(s)	245, 356, 440
RsaNI	GTAC	3 cut(s)	244, 355, 439
SacI	GAGCTC	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	101, 378
SatI	GCNGC	4 cut(s)	165, 374, 497, 583
Sau3AI	GATC	4 cut(s)	19, 239, 343, 449
ScrFI	CCNGG	2 cut(s)	60, 386
SduI	GDGCHC	2 cut(s)	81, 325
SetI	ASST	8 cut(s)	45, 136, 166, 325, 354, 375, 545, 571
SfaNI	GCATC	1 cut(s)	483
Sse9I	AATT	3 cut(s)	186, 253, 455
SseBI	AGGCCT	1 cut(s)	54
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	1 cut(s)	93
SstI	GAGCTC	1 cut(s)	325
StuI	AGGCCT	1 cut(s)	54
StyD4I	CCNGG	2 cut(s)	58, 384
StyI	CCWWGG	3 cut(s)	66, 207, 512
TasI	AATT	3 cut(s)	186, 253, 455
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	549
Tru1I	TTAA	2 cut(s)	101, 378
Tru9I	TTAA	2 cut(s)	101, 378
TscAI	CASTG	1 cut(s)	240
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	4 cut(s)	164, 373, 496, 582
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	155, 486, 514, 569
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	2 cut(s)	186, 455
XceI	RCATGY	2 cut(s)	90, 397
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.