Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

23140406 .. 23141118

Gene Structure 713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTAATGTTTGCGCAGGATCTTGAAGCCACGGAGCTAAGATTAGGGTTACCAGGCACCAAGGATTCCAAGCAGAACACATCTTCTACTACTTTGATTAGCAAGAGCAACAAAAGACCACTGCAACCCGACATGAACGACGAAGACAGAGATTCTTCATCCGCCAAAAGATCCGACCAGCAGATTTCTCTGCCTCCACCTTCCAAGGCACAAATAGTAGGGTGGCCGCCGGTGAGACAATGCCGGAAAAACTGCCTCCAAGCGAAGAAAACTGAGGCGGAGGCAGCCGGGATTTATGTCAAGATAAGCATGGATGGAGCTCCGTATCTAAGAAAGATTGATTTGAAGGTGTACAGAGGGTATCCTGAACTGCTTAAAGCGTTGGAAGACATGTTCAAGTTCAAAGTTGGTGATTATTGTGAGAAGGATTTAGGGTACAATAACAGATCAGAATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGCTGCTTGGAGATGTTCCGTGGGAGATGTTCATCGCCTCGTGCAAGAGGTTGAGAATAATGAAGGGTTCGGAAACGAAAGGCTTAGGCTGCTGCGCGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

198

Amino Acids

22.23

Weight (kDa)

8.44

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	15
AccB1I	GGYRCC	1 cut(s)	56
AccII	CGCG	1 cut(s)	587
AciI	CCGC	3 cut(s)	162, 227, 278
AclWI	GGATC	2 cut(s)	27, 165
AcoI	YGGCCR	1 cut(s)	224
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	3 cut(s)	353, 437, 459
AflIII	ACRYGT	1 cut(s)	390
AgsI	TTSAA	4 cut(s)	26, 346, 397, 403
AjnI	CCWGG	1 cut(s)	52
AloI	GAACNNNNNNTCC	2 cut(s)	377, 409
AluBI	AGCT	2 cut(s)	37, 320
AluI	AGCT	2 cut(s)	37, 320
Alw21I	GWGCWC	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	27, 165
AoxI	GGCC	1 cut(s)	224
ApeKI	GCWGC	4 cut(s)	284, 493, 579, 582
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	16, 587, 589
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	2 cut(s)	244, 422
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	322
BauI	CACGAG	1 cut(s)	529
BbsI	GAAGAC	3 cut(s)	150, 393, 477
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	296, 480, 566, 569
BccI	CCATC	2 cut(s)	308, 473
BciT130I	CCWGG	1 cut(s)	54
BciVI	GTATCC	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
BlsI	GCNGC	5 cut(s)	228, 286, 495, 581, 584
Bme1390I	CCNGG	2 cut(s)	54, 289
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	54, 289
BmsI	GCATC	1 cut(s)	480
BpiI	GAAGAC	3 cut(s)	150, 393, 477
Bpu10I	CCTNAGC	1 cut(s)	574
BpuMI	CCSGG	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	521
BsaJI	CCNNGG	4 cut(s)	30, 60, 204, 509
Bse118I	RCCGGY	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	54
BseDI	CCNNGG	4 cut(s)	30, 60, 204, 509
BseGI	GGATG	3 cut(s)	158, 319, 495
BseJI	GATNNNNATC	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	264
BsePI	GCGCGC	1 cut(s)	585
BseXI	GCAGC	4 cut(s)	296, 480, 566, 569
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	3 cut(s)	230, 244, 288
BsmAI	GTCTC	1 cut(s)	229
BsnI	GGCC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	3 cut(s)	19, 170, 446
BspACI	CCGC	3 cut(s)	162, 227, 278
BspANI	GGCC	1 cut(s)	226
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	587
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	27, 165
BspT107I	GGYRCC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	229
BsrGI	TGTACA	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	4 cut(s)	30, 60, 204, 509
BssHII	GCGCGC	1 cut(s)	585
BssMI	GATC	3 cut(s)	19, 170, 446
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	2 cut(s)	60, 204
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	54
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	38, 273, 329, 574
BstDSI	CCRYGG	2 cut(s)	30, 509
BstEII	GGTNACC	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	158, 319, 495
BstFNI	CGCG	1 cut(s)	587
BstHHI	GCGC	3 cut(s)	16, 587, 589
BstKTI	GATC	3 cut(s)	22, 173, 449
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	3 cut(s)	19, 170, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 579
BstNI	CCWGG	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	394
BstPI	GGTNACC	1 cut(s)	48
BstSCI	CCNGG	2 cut(s)	52, 287
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	4 cut(s)	296, 480, 566, 569
BstV2I	GAAGAC	3 cut(s)	150, 393, 477
BstX2I	RGATCY	2 cut(s)	19, 170
BstYI	RGATCY	2 cut(s)	19, 170
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	226
BtgI	CCRYGG	2 cut(s)	30, 509
BtgZI	GCGATG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	158, 319, 495
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	587
CfoI	GCGC	3 cut(s)	16, 587, 589
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	352, 436, 458
CviAII	CATG	3 cut(s)	133, 310, 391
CviJI	RGCY	7 cut(s)	29, 37, 226, 287, 320, 573, 579
CviKI_1	RGCY	7 cut(s)	29, 37, 226, 287, 320, 573, 579
CviQI	GTAC	3 cut(s)	352, 436, 458
DdeI	CTNAG	4 cut(s)	38, 273, 329, 574
DpnI	GATC	3 cut(s)	21, 172, 448
DpnII	GATC	3 cut(s)	19, 170, 446
EaeI	YGGCCR	1 cut(s)	224
EciI	GGCGGA	2 cut(s)	151, 293
Ecl136II	GAGCTC	1 cut(s)	320
Eco130I	CCWWGG	2 cut(s)	60, 204
Eco24I	GRGCYC	1 cut(s)	322
Eco53kI	GAGCTC	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	52
EcoT14I	CCWWGG	2 cut(s)	60, 204
EcoT38I	GRGCYC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	60, 204
FaeI	CATG	3 cut(s)	136, 313, 394
FaiI	YATR	5 cut(s)	134, 297, 311, 392, 468
FatI	CATG	3 cut(s)	132, 309, 390
Fnu4HI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
FokI	GGATG	3 cut(s)	145, 326, 502
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	3 cut(s)	15, 586, 588
GluI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
HaeIII	GGCC	1 cut(s)	226
HapII	CCGG	3 cut(s)	230, 244, 288
HhaI	GCGC	3 cut(s)	16, 587, 589
Hin1II	CATG	3 cut(s)	136, 313, 394
Hin6I	GCGC	3 cut(s)	14, 585, 587
HinP1I	GCGC	3 cut(s)	14, 585, 587
HinfI	GANTC	2 cut(s)	65, 152
HpaII	CCGG	3 cut(s)	230, 244, 288
HphI	GGTGA	2 cut(s)	244, 422
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	4 cut(s)	175, 451, 562, 593
Hpy188III	TCNNGA	3 cut(s)	23, 301, 365
Hpy8I	GTNNAC	1 cut(s)	352
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	210, 340, 418, 547
HpyCH4V	TGCA	2 cut(s)	124, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 579
HpyF3I	CTNAG	4 cut(s)	38, 273, 329, 574
Hsp92II	CATG	3 cut(s)	136, 313, 394
HspAI	GCGC	3 cut(s)	14, 585, 587
Kzo9I	GATC	3 cut(s)	19, 170, 446
LmnI	GCTCC	3 cut(s)	34, 317, 325
LpnPI	CCDG	8 cut(s)	2, 39, 66, 191, 243, 257, 301, 378
Lsp1109I	GCAGC	4 cut(s)	296, 480, 566, 569
LweI	GCATC	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	3 cut(s)	21, 172, 448
MboI	GATC	3 cut(s)	19, 170, 446
MboII	GAAGA	6 cut(s)	75, 147, 155, 277, 398, 482
MflI	RGATCY	2 cut(s)	19, 170
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	198, 363
MnlI	CCTC	7 cut(s)	204, 266, 268, 274, 350, 531, 538
MseI	TTAA	1 cut(s)	375
MspI	CCGG	3 cut(s)	230, 244, 288
MspR9I	CCNGG	2 cut(s)	54, 289
MvaI	CCWGG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	284, 579
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	3 cut(s)	19, 170, 446
NlaIII	CATG	3 cut(s)	136, 313, 394
NlaIV	GGNNCC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	15
NspI	RCATGY	1 cut(s)	394
PauI	GCGCGC	1 cut(s)	585
PciI	ACATGT	1 cut(s)	390
PfeI	GAWTC	2 cut(s)	65, 152
PkrI	GCNGC	5 cut(s)	228, 286, 495, 581, 584
PscI	ACATGT	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	52
PspEI	GGTNACC	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	19, 170
PteI	GCGCGC	1 cut(s)	585
RsaI	GTAC	3 cut(s)	353, 437, 459
RsaNI	GTAC	3 cut(s)	352, 436, 458
SacI	GAGCTC	1 cut(s)	322
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	227, 285, 494, 580, 583
Sau3AI	GATC	3 cut(s)	19, 170, 446
ScrFI	CCNGG	2 cut(s)	54, 289
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	6 cut(s)	39, 202, 322, 351, 463, 542
SfaNI	GCATC	1 cut(s)	480
SgrAI	CRCCGGYG	1 cut(s)	229
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	3 cut(s)	162, 227, 278
SstI	GAGCTC	1 cut(s)	322
StyD4I	CCNGG	2 cut(s)	52, 287
StyI	CCWWGG	2 cut(s)	60, 204
TasI	AATT	1 cut(s)	452
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	65, 152
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	4 cut(s)	284, 493, 579, 582
TspDTI	ATGAA	5 cut(s)	147, 149, 483, 511, 566
TspGWI	ACGGA	3 cut(s)	47, 312, 498
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.