Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

33515071 .. 33516331

Gene Structure 1261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAAGACCAGCTAAATTTCAAGGCAACTGAGCTAAGATTAGGGTTGCCTGGAAGCTCTGAGGAGCCTCAGAACAAACAAGCAGCAGCATCTCCTCCTATGACAAAGAATAACAAGAGGGCCTCGCCGGATTCAACGGCTGAGGAATGCAGTACAAATTCTGATCACATAGATGCCCCTCCCACCAAGACACAAGTAGTAGGGTGGCCCCCAATCAGATCTTACAGGAAAAACAGTTTGCAACTGCAAAAATCCGATGTGTACGTGAAAGTAAGCGTTGACGGAGCTCCTTATCTGAGAAAGATTGATCTCAAGATTTACAATAGCTACGCGGAACTCATCGAGGCCTTAGAGAAGATGTTCAACCTAGCCAATATTAATGGACTGGATTTTGCTCCGACTTATGAAGACAAAGATGGTGACTGGATGCTTGTTGGAGATGTCCCATGGAATATGTTTGTTTCTTCCTGCAATAGGCTGAGAATCATGAAGGGATCGGAAGCCAGAGGATTCACTACTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

176

Amino Acids

19.61

Weight (kDa)

5.51

Isoelectric Point (pI)

58.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	9 - 123	4.9e-29	AUX/IAA family
AUX_IAA	PF02309	126 - 171	1.8e-24	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	332
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	1 cut(s)	502
AcsI	RAATTY	2 cut(s)	16, 157
AfaI	GTAC	2 cut(s)	154, 263
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	3 cut(s)	22, 135, 364
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	5 cut(s)	13, 34, 57, 287, 327
AluI	AGCT	5 cut(s)	13, 34, 57, 287, 327
Alw21I	GWGCWC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	502
AoxI	GGCC	3 cut(s)	120, 206, 345
ApeKI	GCWGC	2 cut(s)	83, 86
ApoI	RAATTY	2 cut(s)	16, 157
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	120, 207
AsuHPI	GGTGA	1 cut(s)	431
BanII	GRGCYC	1 cut(s)	289
BbsI	GAAGAC	2 cut(s)	12, 414
Bbv12I	GWGCWC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	95, 98
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	51
BclI	TGATCA	1 cut(s)	163
BfaI	CTAG	1 cut(s)	368
BglII	AGATCT	1 cut(s)	218
BisI	GCNGC	2 cut(s)	84, 87
BlsI	GCNGC	2 cut(s)	85, 88
Bme1390I	CCNGG	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	120, 207
BmiI	GGNNCC	2 cut(s)	66, 209
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	3 cut(s)	98, 163, 417
BpiI	GAAGAC	2 cut(s)	12, 414
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	296
BsaAI	YACGTR	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse1I	ACTGG	2 cut(s)	390, 428
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	6 cut(s)	21, 51, 83, 132, 287, 470
BseNI	ACTGG	2 cut(s)	390, 428
BseRI	GAGGAG	2 cut(s)	77, 84
BseXI	GCAGC	2 cut(s)	95, 98
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	122, 208, 347
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	122, 208, 347
Bsp1286I	GDGCHC	1 cut(s)	289
Bsp143I	GATC	4 cut(s)	163, 218, 307, 494
Bsp19I	CCATGG	1 cut(s)	446
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	3 cut(s)	122, 208, 347
BspCNI	CTCAG	6 cut(s)	22, 52, 82, 133, 288, 471
BspFNI	CGCG	1 cut(s)	332
BspHI	TCATGA	1 cut(s)	486
BspLI	GGNNCC	2 cut(s)	66, 209
BspPI	GGATC	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	390, 428
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	4 cut(s)	163, 218, 307, 494
BssT1I	CCWWGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	236
BstBAI	YACGTR	1 cut(s)	265
BstDEI	CTNAG	8 cut(s)	30, 35, 60, 69, 141, 296, 349, 479
BstDSI	CCRYGG	1 cut(s)	446
BstENI	CCTNNNNNAGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	432
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	4 cut(s)	166, 221, 310, 497
BstMBI	GATC	4 cut(s)	163, 218, 307, 494
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	95, 98
BstV2I	GAAGAC	2 cut(s)	12, 414
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	122, 208, 347
BtgI	CCRYGG	1 cut(s)	446
BtsCI	GGATG	1 cut(s)	432
CciI	TCATGA	1 cut(s)	486
Cfr13I	GGNCC	2 cut(s)	120, 207
Csp6I	GTAC	2 cut(s)	153, 262
CviAII	CATG	2 cut(s)	447, 487
CviQI	GTAC	2 cut(s)	153, 262
DdeI	CTNAG	8 cut(s)	30, 35, 60, 69, 141, 296, 349, 479
DpnI	GATC	4 cut(s)	165, 220, 309, 496
DpnII	GATC	4 cut(s)	163, 218, 307, 494
Ecl136II	GAGCTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	446
Eco147I	AGGCCT	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	472
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	446
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	446
FaeI	CATG	2 cut(s)	450, 490
FaiI	YATR	6 cut(s)	101, 170, 405, 448, 455, 488
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	2 cut(s)	446, 486
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	84, 87
FokI	GGATG	1 cut(s)	439
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	84, 87
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	2 cut(s)	84, 87
HaeIII	GGCC	3 cut(s)	122, 208, 347
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	2 cut(s)	450, 490
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	131, 483, 510
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	2 cut(s)	262, 280
Hpy188I	TCNGA	9 cut(s)	61, 72, 163, 218, 256, 297, 399, 499, 527
Hpy188III	TCNNGA	2 cut(s)	313, 487
Hpy8I	GTNNAC	2 cut(s)	262, 280
HpyAV	CCTTC	1 cut(s)	484
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	264
HpyCH4V	TGCA	4 cut(s)	150, 241, 247, 471
HpyF3I	CTNAG	8 cut(s)	30, 35, 60, 69, 141, 296, 349, 479
HpySE526I	ACGT	1 cut(s)	264
Hsp92II	CATG	2 cut(s)	450, 490
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	163, 218, 307, 494
LmnI	GCTCC	4 cut(s)	64, 284, 292, 400
LpnPI	CCDG	9 cut(s)	23, 36, 63, 141, 211, 371, 409, 481, 517
Lsp1109I	GCAGC	2 cut(s)	95, 98
LweI	GCATC	3 cut(s)	98, 163, 417
MaeI	CTAG	1 cut(s)	368
MaeII	ACGT	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	4 cut(s)	165, 220, 309, 496
MboI	GATC	4 cut(s)	163, 218, 307, 494
MboII	GAAGA	4 cut(s)	17, 367, 419, 456
MflI	RGATCY	1 cut(s)	218
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	2 cut(s)	16, 157
MmeI	TCCRAC	2 cut(s)	415, 422
MnlI	CCTC	9 cut(s)	55, 78, 105, 111, 133, 136, 189, 337, 500
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	378
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	51
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	51
MvnI	CGCG	1 cut(s)	332
NcoI	CCATGG	1 cut(s)	446
NdeII	GATC	4 cut(s)	163, 218, 307, 494
NlaIII	CATG	2 cut(s)	450, 490
NlaIV	GGNNCC	2 cut(s)	66, 209
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	1 cut(s)	486
PceI	AGGCCT	1 cut(s)	347
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	3 cut(s)	131, 483, 510
PkrI	GCNGC	2 cut(s)	85, 88
Ppu21I	YACGTR	1 cut(s)	265
PshBI	ATTAAT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	289
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	66, 209
PspPI	GGNCC	2 cut(s)	120, 207
PsuI	RGATCY	1 cut(s)	218
RsaI	GTAC	2 cut(s)	154, 263
RsaNI	GTAC	2 cut(s)	153, 262
RseI	CAYNNNNRTG	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	2 cut(s)	84, 87
Sau3AI	GATC	4 cut(s)	163, 218, 307, 494
Sau96I	GGNCC	2 cut(s)	120, 207
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	7 cut(s)	15, 36, 59, 267, 289, 329, 369
SfaNI	GCATC	3 cut(s)	98, 163, 417
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	2 cut(s)	16, 157
SseBI	AGGCCT	1 cut(s)	347
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	1 cut(s)	368
SstI	GAGCTC	1 cut(s)	289
StuI	AGGCCT	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	267
TaqI	TCGA	1 cut(s)	342
TasI	AATT	2 cut(s)	16, 157
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	3 cut(s)	131, 483, 510
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	83, 86
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	2 cut(s)	420, 503
TspGWI	ACGGA	1 cut(s)	297
VspI	ATTAAT	1 cut(s)	378
XagI	CCTNNNNNAGG	1 cut(s)	472
XapI	RAATTY	2 cut(s)	16, 157
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.