Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

20653624 .. 20655672

Gene Structure 2049 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G232400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAAGGGTCAGTGAAATATGAGAACAATGAAGACCAGCTCAATTTCAAGGCAACTGAGCTGAGATTGGGATTGCCTGGAAGCACAGAAGAGCCTGAGAACAAACAAGCAGCAACACCTCCTCCTCCTAGGAACAACAAGAGGTCATCACCCGATCCAACGGCGGAGGAGTGTTGTACAAATTCTGATCACACAGATGCCCCTCCCACCAAGACACAAATAGTTGGGTGGCCTCCAGTGAGATCTTATAGGAAAAACAGCATGCAAGCAAGAAAGCCAGAGGCATACGTGAAAGTAAGCGTCGATGGAGCTCCTTATCTGAGGAAGATTGATCTCAAGGTATACAAGAGCTACCCAGAACTCCTCAAGGCCTTGGAGAACATGTTCAACCTCTCCAATATTGGAAACTACTCAGAGACACAAGGCTACATTAATGGATCTGACTTTGCTCCTACTTATGAAGATAAGGATGGTGACTGGATGCTTGTTGGAGATGTCCCATGGAATATGTTTGTGTCTTCCTGCAAAAGGCTGAGAATCATGAAAGGAACTGAAGCTAGAGGATTGACTTCTTGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

194

Amino Acids

21.71

Weight (kDa)

5.96

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	1 cut(s)	164
AclWI	GGATC	2 cut(s)	149, 445
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	528
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	49, 388
AjnI	CCWGG	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	368, 400
AluBI	AGCT	5 cut(s)	40, 61, 311, 351, 557
AluI	AGCT	5 cut(s)	40, 61, 311, 351, 557
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	149, 445
AoxI	GGCC	2 cut(s)	230, 369
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	181
AseI	ATTAAT	1 cut(s)	432
Asp700I	GAANNNNTTC	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	141, 485
AvrII	CCTAGG	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	313
BbsI	GAAGAC	2 cut(s)	39, 510
Bbv12I	GWGCWC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	2 cut(s)	299, 464
BceAI	ACGGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	78
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	129, 558
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	1 cut(s)	111
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	2 cut(s)	187, 471
BpiI	GAAGAC	2 cut(s)	39, 510
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	320, 350
BsaAI	YACGTR	1 cut(s)	289
BsaJI	CCNNGG	3 cut(s)	128, 372, 500
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 368, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	528
Bse1I	ACTGG	2 cut(s)	236, 482
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	3 cut(s)	128, 372, 500
BseGI	GGATG	2 cut(s)	475, 486
BseLI	CCNNNNNNNGG	1 cut(s)	528
BseMII	CTCAG	6 cut(s)	48, 53, 87, 311, 426, 524
BseNI	ACTGG	2 cut(s)	236, 482
BseRI	GAGGAG	4 cut(s)	111, 114, 182, 353
BseXI	GCAGC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	232, 371
BsiHKAI	GWGCWC	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	232, 371
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	176
Bsp143I	GATC	5 cut(s)	154, 187, 242, 331, 437
Bsp19I	CCATGG	1 cut(s)	500
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	232, 371
BspCNI	CTCAG	6 cut(s)	49, 54, 88, 312, 425, 525
BspHI	TCATGA	1 cut(s)	540
BspPI	GGATC	2 cut(s)	149, 445
BspQI	GCTCTTC	1 cut(s)	84
BsrGI	TGTACA	1 cut(s)	176
BsrI	ACTGG	2 cut(s)	236, 482
BssECI	CCNNGG	3 cut(s)	128, 372, 500
BssMI	GATC	5 cut(s)	154, 187, 242, 331, 437
BssNAI	GTATAC	1 cut(s)	343
BssT1I	CCWWGG	3 cut(s)	128, 372, 500
Bst1107I	GTATAC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	84
BstAUI	TGTACA	1 cut(s)	176
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	2 cut(s)	263, 267
BstDEI	CTNAG	6 cut(s)	57, 62, 96, 320, 412, 533
BstDSI	CCRYGG	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	475, 486
BstKTI	GATC	5 cut(s)	157, 190, 245, 334, 440
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	5 cut(s)	154, 187, 242, 331, 437
BstNI	CCWGG	1 cut(s)	78
BstNSI	RCATGY	2 cut(s)	265, 385
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	2 cut(s)	39, 510
BstX2I	RGATCY	2 cut(s)	242, 437
BstYI	RGATCY	2 cut(s)	242, 437
BstZ17I	GTATAC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	232, 371
BtgI	CCRYGG	1 cut(s)	500
BtsCI	GGATG	2 cut(s)	475, 486
BtsIMutI	CAGTG	2 cut(s)	18, 243
Cac8I	GCNNGC	2 cut(s)	263, 267
CciI	TCATGA	1 cut(s)	540
CseI	GACGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	177
CviAII	CATG	4 cut(s)	262, 382, 501, 541
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	6 cut(s)	57, 62, 96, 320, 412, 533
DpnI	GATC	5 cut(s)	156, 189, 244, 333, 439
DpnII	GATC	5 cut(s)	154, 187, 242, 331, 437
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	179
Ecl136II	GAGCTC	1 cut(s)	311
Eco130I	CCWWGG	3 cut(s)	128, 372, 500
Eco147I	AGGCCT	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	3 cut(s)	128, 372, 500
EcoT38I	GRGCYC	1 cut(s)	313
ErhI	CCWWGG	3 cut(s)	128, 372, 500
FaeI	CATG	4 cut(s)	265, 385, 504, 544
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	4 cut(s)	261, 381, 500, 540
FbaI	TGATCA	1 cut(s)	187
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	2 cut(s)	482, 493
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	129, 558
GluI	GCNGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	232, 371
HgaI	GACGC	1 cut(s)	289
Hin1II	CATG	4 cut(s)	265, 385, 504, 544
HinfI	GANTC	1 cut(s)	537
HphI	GGTGA	2 cut(s)	141, 485
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	5 cut(s)	187, 321, 415, 442, 581
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	2 cut(s)	265, 525
HpyF3I	CTNAG	6 cut(s)	57, 62, 96, 320, 412, 533
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	4 cut(s)	265, 385, 504, 544
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	5 cut(s)	154, 187, 242, 331, 437
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	308, 316, 454
LpnPI	CCDG	9 cut(s)	50, 63, 90, 108, 249, 291, 369, 463, 535
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	187, 471
MaeI	CTAG	2 cut(s)	129, 558
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	5 cut(s)	156, 189, 244, 333, 439
MboI	GATC	5 cut(s)	154, 187, 242, 331, 437
MboII	GAAGA	5 cut(s)	44, 101, 337, 473, 510
MflI	RGATCY	2 cut(s)	242, 437
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	2 cut(s)	43, 181
MmeI	TCCRAC	2 cut(s)	182, 469
MroXI	GAANNNNTTC	1 cut(s)	383
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NcoI	CCATGG	1 cut(s)	500
NdeII	GATC	5 cut(s)	154, 187, 242, 331, 437
NlaIII	CATG	4 cut(s)	265, 385, 504, 544
NmuCI	GTSAC	1 cut(s)	473
NspI	RCATGY	2 cut(s)	265, 385
PaeI	GCATGC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	540
PceI	AGGCCT	1 cut(s)	371
PciI	ACATGT	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	537
PkrI	GCNGC	1 cut(s)	112
Ppu21I	YACGTR	1 cut(s)	289
PscI	ACATGT	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PsuI	RGATCY	2 cut(s)	242, 437
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	313
SapI	GCTCTTC	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	5 cut(s)	154, 187, 242, 331, 437
ScrFI	CCNGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	313
SfaNI	GCATC	2 cut(s)	187, 471
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	335, 365
SmoI	CTYRAG	2 cut(s)	335, 365
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	2 cut(s)	43, 181
SseBI	AGGCCT	1 cut(s)	371
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	2 cut(s)	129, 558
SstI	GAGCTC	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	3 cut(s)	128, 372, 500
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	1 cut(s)	303
TasI	AATT	2 cut(s)	43, 181
TatI	WGTACW	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	537
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	18, 243
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	3 cut(s)	45, 474, 557
TspRI	CASTG	2 cut(s)	18, 243
VspI	ATTAAT	1 cut(s)	432
XagI	CCTNNNNNAGG	1 cut(s)	526
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	2 cut(s)	265, 385
XmaJI	CCTAGG	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	383
XspI	CTAG	2 cut(s)	129, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.