Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

1919207 .. 1920881

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAAAGCAAGACACATGAGAATGATCTCAACCTTAAGGCAACAGAACTGAGATTGGGGTTGCCAGGGAGAGATGAAAGTGATGAGGTTCAAGCAGTAGGGCAGCTGCCTAGTGCTCTTAACAAGAAGAGAGCTTTGCCTGATACAAAAAGTGAAGAAGAGTATGCATCAAAGGAAACCTCTGATGCTCATAAGGAAACCCCTCCTGCAAAGGCACAAATAGTGGGCTGGCCACCAATCAGATCTTACAGGAAGAACAGCCTTCAGGCAAATAAGACTGAGGCTGAGATTTCTGGGATTTATGTGAAAGTAAGCATGGATGGAGCACCTTACCTCAGAAAAATTGATCTGAGGGTTTACAAAGGCTACCCAGAACTCCTAAAGGCCTTAGAAGTCATGTTCAAATTCACTATAGGCCAATACTCAGAGAGGGAAGGCTACAAAGGCTCAGAATATGCACCTACTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTTCCATGGGAAATGTTCATGTCATCCTGCAAGAAGCTGAGAATCATGAAAGGATCAGAAGCCAGAGGCTTGGGGTGTGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

197

Amino Acids

22.03

Weight (kDa)

6.22

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	248
AflII	CTTAAG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	92, 403
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	3 cut(s)	106, 134, 541
AluI	AGCT	3 cut(s)	106, 134, 541
Alw21I	GWGCWC	2 cut(s)	118, 328
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	3 cut(s)	230, 384, 415
ApeKI	GCWGC	2 cut(s)	103, 106
ApoI	RAATTY	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	494
BalI	TGGCCA	1 cut(s)	232
Bbv12I	GWGCWC	2 cut(s)	118, 328
BbvI	GCAGC	2 cut(s)	93, 115
BccI	CCATC	2 cut(s)	314, 473
BciT130I	CCWGG	1 cut(s)	66
BfaI	CTAG	1 cut(s)	111
BfmI	CTRYAG	1 cut(s)	411
BfrI	CTTAAG	1 cut(s)	35
BglII	AGATCT	1 cut(s)	242
BisI	GCNGC	2 cut(s)	104, 107
BlsI	GCNGC	2 cut(s)	105, 108
Bme1390I	CCNGG	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	3 cut(s)	175, 176, 480
BsaJI	CCNNGG	2 cut(s)	65, 509
Bse1I	ACTGG	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	65, 509
BseGI	GGATG	3 cut(s)	325, 495, 527
BseMII	CTCAG	8 cut(s)	41, 270, 276, 341, 349, 438, 462, 533
BseNI	ACTGG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	93, 115
BshFI	GGCC	3 cut(s)	232, 386, 417
BsiHKAI	GWGCWC	2 cut(s)	118, 328
BsnI	GGCC	3 cut(s)	232, 386, 417
Bsp1286I	GDGCHC	2 cut(s)	118, 328
Bsp143I	GATC	4 cut(s)	25, 242, 346, 557
Bsp19I	CCATGG	1 cut(s)	509
BspANI	GGCC	3 cut(s)	232, 386, 417
BspCNI	CTCAG	8 cut(s)	42, 271, 277, 342, 348, 437, 461, 534
BspHI	TCATGA	1 cut(s)	549
BspPI	GGATC	1 cut(s)	565
BspTI	CTTAAG	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	2 cut(s)	65, 509
BssMI	GATC	4 cut(s)	25, 242, 346, 557
BssT1I	CCWWGG	1 cut(s)	509
Bst2UI	CCWGG	1 cut(s)	66
Bst6I	CTCTTC	2 cut(s)	122, 153
BstAFI	CTTAAG	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	9 cut(s)	50, 279, 285, 335, 350, 388, 424, 448, 542
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	325, 495, 527
BstKTI	GATC	4 cut(s)	28, 245, 349, 560
BstMBI	GATC	4 cut(s)	25, 242, 346, 557
BstMWI	GCNNNNNNNGC	1 cut(s)	444
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstSFI	CTRYAG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	93, 115
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	242
BsuRI	GGCC	3 cut(s)	232, 386, 417
BtgI	CCRYGG	1 cut(s)	509
BtsCI	GGATG	3 cut(s)	325, 495, 527
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	1 cut(s)	549
CviAII	CATG	6 cut(s)	17, 316, 397, 510, 523, 550
DdeI	CTNAG	9 cut(s)	50, 279, 285, 335, 350, 388, 424, 448, 542
DpnI	GATC	4 cut(s)	27, 244, 348, 559
DpnII	GATC	4 cut(s)	25, 242, 346, 557
EaeI	YGGCCR	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	122, 153
EarI	CTCTTC	2 cut(s)	122, 153
Eco130I	CCWWGG	1 cut(s)	509
Eco147I	AGGCCT	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	509
EcoT22I	ATGCAT	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	6 cut(s)	20, 319, 400, 513, 526, 553
FatI	CATG	6 cut(s)	16, 315, 396, 509, 522, 549
Fnu4HI	GCNGC	2 cut(s)	104, 107
FokI	GGATG	3 cut(s)	332, 502, 514
Fsp4HI	GCNGC	2 cut(s)	104, 107
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	2 cut(s)	104, 107
HaeIII	GGCC	3 cut(s)	232, 386, 417
Hin1II	CATG	6 cut(s)	20, 319, 400, 513, 526, 553
HinfI	GANTC	1 cut(s)	546
HphI	GGTGA	1 cut(s)	494
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	7 cut(s)	184, 242, 338, 351, 427, 451, 562
Hpy188III	TCNNGA	1 cut(s)	550
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	2 cut(s)	272, 428
HpyCH4V	TGCA	4 cut(s)	167, 209, 458, 534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	444
HpyF3I	CTNAG	9 cut(s)	50, 279, 285, 335, 350, 388, 424, 448, 542
Hsp92II	CATG	6 cut(s)	20, 319, 400, 513, 526, 553
Kzo9I	GATC	4 cut(s)	25, 242, 346, 557
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	2 cut(s)	93, 115
LweI	GCATC	3 cut(s)	175, 176, 480
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	482
MalI	GATC	4 cut(s)	27, 244, 348, 559
MboI	GATC	4 cut(s)	25, 242, 346, 557
MboII	GAAGA	4 cut(s)	139, 167, 170, 265
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	2 cut(s)	118, 328
MlsI	TGGCCA	1 cut(s)	232
MluCI	AATT	2 cut(s)	342, 404
MluNI	TGGCCA	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	9 cut(s)	79, 190, 213, 274, 344, 345, 423, 463, 563
Mox20I	TGGCCA	1 cut(s)	232
Mph1103I	ATGCAT	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	232
MseI	TTAA	2 cut(s)	36, 120
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	106
MspCI	CTTAAG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MwoI	GCNNNNNNNGC	1 cut(s)	444
NcoI	CCATGG	1 cut(s)	509
NdeII	GATC	4 cut(s)	25, 242, 346, 557
NlaIII	CATG	6 cut(s)	20, 319, 400, 513, 526, 553
NmuCI	GTSAC	1 cut(s)	482
NsiI	ATGCAT	1 cut(s)	169
PagI	TCATGA	1 cut(s)	549
PceI	AGGCCT	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	2 cut(s)	105, 108
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	106
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	36, 120
SatI	GCNGC	2 cut(s)	104, 107
Sau3AI	GATC	4 cut(s)	25, 242, 346, 557
ScrFI	CCNGG	1 cut(s)	66
SduI	GDGCHC	2 cut(s)	118, 328
SetI	ASST	9 cut(s)	36, 90, 108, 136, 182, 331, 336, 463, 543
SfaNI	GCATC	3 cut(s)	175, 176, 480
SfcI	CTRYAG	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	21
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	342, 404
SseBI	AGGCCT	1 cut(s)	386
SspMI	CTAG	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	509
TasI	AATT	2 cut(s)	342, 404
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	2 cut(s)	36, 120
Tru9I	TTAA	2 cut(s)	36, 120
TseFI	GTSAC	1 cut(s)	482
TseI	GCWGC	2 cut(s)	103, 106
Tsp45I	GTSAC	1 cut(s)	482
TspDTI	ATGAA	3 cut(s)	90, 511, 566
Vha464I	CTTAAG	1 cut(s)	35
XapI	RAATTY	1 cut(s)	404
XspI	CTAG	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.