Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

8360996 .. 8362033

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G14560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGAAGTCACCAATGGGCTTAACCTTAAGGACACAGAGCTTCGTTTGGGATTACCCGGAGCACAAGAAGAACAACAACTAGAACTTTCTTGCGTCAGAAGCAACAACAAGCGCAAGAACAACGACTCAACAGAAGAATCTGCTCCTCCTCCTGCAAAAACACAAATCGTTGGATGGCCTCCAGTGAGATCTAACCGTAAGAACAACAACAACAAAAACGTGAGTTATGTGAAAGTGAGTATGGACGGAGCTCCATATCTCCGTAAGATAGATCTCAAGATGTACAAAAACTATCCAGAGCTTCTCAAAGCACTAGAGAACATGTTCAAGTTCACAGTAGGTGAATATTCCGAGAGAGAAGGCTACAAAGGATCTGGATTTGTACCTACTTATGAAGACAAAGATGGAGATTGGATGTTGGTCGGTGATGTTCCATGGGACATGTTCTCTTCATCTTGTCAAAAACTCAGAATCATGAAAGGATCCGAAGCTCCTACTGCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

168

Amino Acids

19.03

Weight (kDa)

7.66

Isoelectric Point (pI)

50.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	36 - 164	9.9e-47	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	379, 477, 490
AfaI	GTAC	2 cut(s)	284, 384
AflII	CTTAAG	1 cut(s)	26
AflIII	ACRYGT	2 cut(s)	321, 441
AgsI	TTSAA	1 cut(s)	328
AluBI	AGCT	4 cut(s)	40, 251, 301, 491
AluI	AGCT	4 cut(s)	40, 251, 301, 491
Alw21I	GWGCWC	2 cut(s)	64, 253
AlwI	GGATC	3 cut(s)	379, 477, 490
AoxI	GGCC	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	114
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	353, 437
BamHI	GGATCC	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	64, 253
BccI	CCATC	2 cut(s)	168, 398
BcnI	CCSGG	1 cut(s)	57
BfaI	CTAG	2 cut(s)	80, 314
BfrI	CTTAAG	1 cut(s)	26
BglII	AGATCT	2 cut(s)	188, 271
Bme1390I	CCNGG	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	179, 420
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	1 cut(s)	182
BseRI	GAGGAG	2 cut(s)	135, 138
BshFI	GGCC	1 cut(s)	178
BsiHKAI	GWGCWC	2 cut(s)	64, 253
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	1 cut(s)	452
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	64, 253
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	188, 271, 371, 482
Bsp19I	CCATGG	1 cut(s)	434
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	1 cut(s)	480
BspHI	TCATGA	1 cut(s)	474
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	3 cut(s)	379, 477, 490
BspTI	CTTAAG	1 cut(s)	26
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	4 cut(s)	188, 271, 371, 482
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	2 cut(s)	197, 337
Bst6I	CTCTTC	1 cut(s)	454
BstAFI	CTTAAG	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	2 cut(s)	179, 420
BstHHI	GCGC	1 cut(s)	114
BstKTI	GATC	4 cut(s)	191, 274, 374, 485
BstMBI	GATC	4 cut(s)	188, 271, 371, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 497
BstNSI	RCATGY	2 cut(s)	325, 445
BstSCI	CCNGG	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	4 cut(s)	188, 271, 371, 482
BstYI	RGATCY	4 cut(s)	188, 271, 371, 482
BsuRI	GGCC	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	2 cut(s)	179, 420
BtsIMutI	CAGTG	1 cut(s)	189
CciI	TCATGA	1 cut(s)	474
CfoI	GCGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	283, 383
CviAII	CATG	4 cut(s)	322, 435, 442, 475
CviJI	RGCY	7 cut(s)	19, 40, 178, 251, 301, 363, 491
CviKI_1	RGCY	7 cut(s)	19, 40, 178, 251, 301, 363, 491
CviQI	GTAC	2 cut(s)	283, 383
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	4 cut(s)	190, 273, 373, 484
DpnII	GATC	4 cut(s)	188, 271, 371, 482
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	325, 438, 445, 478
FaiI	YATR	9 cut(s)	228, 242, 256, 323, 393, 436, 443, 476, 505
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	4 cut(s)	321, 434, 441, 474
FokI	GGATG	2 cut(s)	186, 427
FriOI	GRGCYC	1 cut(s)	253
FspBI	CTAG	2 cut(s)	80, 314
GlaI	GCGC	1 cut(s)	113
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	114
Hin1II	CATG	4 cut(s)	325, 438, 445, 478
Hin6I	GCGC	1 cut(s)	112
HinP1I	GCGC	1 cut(s)	112
HinfI	GANTC	3 cut(s)	125, 137, 471
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	353, 437
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	98, 352, 470, 487
Hpy188III	TCNNGA	4 cut(s)	277, 296, 375, 475
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	197, 337
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 497
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	325, 438, 445, 478
HspAI	GCGC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	188, 271, 371, 482
LmnI	GCTCC	5 cut(s)	59, 148, 248, 256, 496
LpnPI	CCDG	5 cut(s)	70, 165, 195, 309, 360
MaeI	CTAG	2 cut(s)	80, 314
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	4 cut(s)	190, 273, 373, 484
MboI	GATC	4 cut(s)	188, 271, 371, 482
MboII	GAAGA	4 cut(s)	80, 146, 407, 441
MflI	RGATCY	4 cut(s)	188, 271, 371, 482
MhlI	GDGCHC	2 cut(s)	64, 253
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	3 cut(s)	156, 159, 189
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	21, 27
MspCI	CTTAAG	1 cut(s)	26
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	99, 497
NciI	CCSGG	1 cut(s)	57
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	4 cut(s)	188, 271, 371, 482
NlaIII	CATG	4 cut(s)	325, 438, 445, 478
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	7
NspI	RCATGY	2 cut(s)	325, 445
PagI	TCATGA	1 cut(s)	474
PciI	ACATGT	2 cut(s)	321, 441
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	2 cut(s)	137, 471
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
PscI	ACATGT	2 cut(s)	321, 441
Psp124BI	GAGCTC	1 cut(s)	253
PspN4I	GGNNCC	1 cut(s)	484
PsuI	RGATCY	4 cut(s)	188, 271, 371, 482
RsaI	GTAC	2 cut(s)	284, 384
RsaNI	GTAC	2 cut(s)	283, 383
SacI	GAGCTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	21, 27
Sau3AI	GATC	4 cut(s)	188, 271, 371, 482
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	2 cut(s)	64, 253
SetI	ASST	8 cut(s)	27, 42, 222, 253, 303, 343, 388, 493
SmlI	CTYRAG	2 cut(s)	26, 275
SmoI	CTYRAG	2 cut(s)	26, 275
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	2 cut(s)	80, 314
SstI	GAGCTC	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	197, 337
TaiI	ACGT	1 cut(s)	222
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	137, 471
Tru1I	TTAA	2 cut(s)	21, 27
Tru9I	TTAA	2 cut(s)	21, 27
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	408, 441, 491
TspGWI	ACGGA	2 cut(s)	251, 261
TspRI	CASTG	1 cut(s)	189
Vha464I	CTTAAG	1 cut(s)	26
XceI	RCATGY	2 cut(s)	325, 445
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	80, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.