Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000235.1

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Forward (+)

332 .. 976

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000235.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 404 bp

atggctttccaagcagaggatctcaaccttgaagccactgagctcagattgggcctacccggaaccaaggaatccgagcaacaaaaaacgaacaacaaaagagcattgccagttgagcctgaatccaatgcttcttcagctcccaagcctcctccctccaaggcacaagtagttggatggccaccggtgagatcataccggaaaaactgtttccaggcgaagaaaaccgagggagaaagcggtgggatgttcgtgaaagtcagcatggatggagctccataccttcgaaagatggacttgaaggtttacaaaggatatccagagctgcttaaggccttggaggacatgttcaagttcaaggttggtgaatattgtgagaaggaactagggtacaacaacagatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0044212 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

135

Amino Acids

15.17

Weight (kDa)

9.0

Isoelectric Point (pI)

48.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	345
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	4 cut(s)	32, 301, 352, 358
AjnI	CCWGG	1 cut(s)	213
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	4 cut(s)	43, 140, 275, 325
AluI	AGCT	4 cut(s)	43, 140, 275, 325
Alw21I	GWGCWC	2 cut(s)	45, 277
AlwI	GGATC	1 cut(s)	27
AoxI	GGCC	3 cut(s)	52, 179, 333
ApeKI	GCWGC	1 cut(s)	325
AsiGI	ACCGGT	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	2 cut(s)	199, 377
AsuII	TTCGAA	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	45, 277
Bbv12I	GWGCWC	2 cut(s)	45, 277
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	3 cut(s)	171, 263, 286
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	60
BfaI	CTAG	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	2 cut(s)	60, 215
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	60, 215
Bpu14I	TTCGAA	1 cut(s)	286
BpuMI	CCSGG	1 cut(s)	60
BsaJI	CCNNGG	4 cut(s)	66, 159, 228, 336
BsaWI	WCCGGW	2 cut(s)	184, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	110
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	215
BseDI	CCNNGG	4 cut(s)	66, 159, 228, 336
BseGI	GGATG	3 cut(s)	182, 252, 274
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	30, 58
BseNI	ACTGG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	3 cut(s)	54, 181, 335
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	2 cut(s)	45, 277
BsiSI	CCGG	3 cut(s)	60, 185, 199
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	3 cut(s)	54, 181, 335
Bsp119I	TTCGAA	1 cut(s)	286
Bsp1286I	GDGCHC	2 cut(s)	45, 277
Bsp143I	GATC	2 cut(s)	19, 191
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	54, 181, 335
BspCNI	CTCAG	2 cut(s)	31, 57
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	27
BspT104I	TTCGAA	1 cut(s)	286
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	110
BssAI	RCCGGY	1 cut(s)	184
BssECI	CCNNGG	4 cut(s)	66, 159, 228, 336
BssMI	GATC	2 cut(s)	19, 191
BssT1I	CCWWGG	3 cut(s)	66, 159, 336
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	329
BstBI	TTCGAA	1 cut(s)	286
BstDEI	CTNAG	2 cut(s)	39, 44
BstF5I	GGATG	3 cut(s)	182, 252, 274
BstKTI	GATC	3 cut(s)	22, 194, 404
BstMBI	GATC	2 cut(s)	19, 191
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	2 cut(s)	58, 213
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
BsuRI	GGCC	3 cut(s)	54, 181, 335
BtsCI	GGATG	3 cut(s)	182, 252, 274
BtsIMutI	CAGTG	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	184
CviAII	CATG	2 cut(s)	265, 346
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	39, 44
DpnI	GATC	3 cut(s)	21, 193, 403
DpnII	GATC	2 cut(s)	19, 191
EaeI	YGGCCR	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	43, 275
Eco130I	CCWWGG	3 cut(s)	66, 159, 336
Eco147I	AGGCCT	1 cut(s)	335
Eco24I	GRGCYC	2 cut(s)	45, 277
Eco32I	GATATC	1 cut(s)	317
Eco53kI	GAGCTC	2 cut(s)	43, 275
Eco57I	CTGAAG	1 cut(s)	120
EcoICRI	GAGCTC	2 cut(s)	43, 275
EcoRII	CCWGG	1 cut(s)	213
EcoRV	GATATC	1 cut(s)	317
EcoT14I	CCWWGG	3 cut(s)	66, 159, 336
EcoT38I	GRGCYC	2 cut(s)	45, 277
ErhI	CCWWGG	3 cut(s)	66, 159, 336
FaeI	CATG	2 cut(s)	268, 349
FaiI	YATR	4 cut(s)	196, 266, 280, 347
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	2 cut(s)	264, 345
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	3 cut(s)	189, 259, 281
FriOI	GRGCYC	2 cut(s)	45, 277
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	54, 181, 335
HapII	CCGG	3 cut(s)	60, 185, 199
Hin1II	CATG	2 cut(s)	268, 349
HinfI	GANTC	2 cut(s)	71, 122
HpaII	CCGG	3 cut(s)	60, 185, 199
HphI	GGTGA	2 cut(s)	199, 377
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	47, 76
Hpy188III	TCNNGA	2 cut(s)	253, 320
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	3 cut(s)	293, 295, 373
HpyCH4III	ACNGT	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
HpyF3I	CTNAG	2 cut(s)	39, 44
Hsp92II	CATG	2 cut(s)	268, 349
Kzo9I	GATC	2 cut(s)	19, 191
LmnI	GCTCC	3 cut(s)	145, 272, 280
LpnPI	CCDG	8 cut(s)	73, 123, 132, 198, 200, 212, 227, 333
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	386
MalI	GATC	3 cut(s)	21, 193, 403
MboI	GATC	2 cut(s)	19, 191
MboII	GAAGA	2 cut(s)	126, 232
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	45, 277
MlsI	TGGCCA	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	181
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	6 cut(s)	10, 159, 162, 166, 223, 334
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	3 cut(s)	60, 185, 199
MspR9I	CCNGG	2 cut(s)	60, 215
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	3 cut(s)	11, 115, 137
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	19, 191
NlaIII	CATG	2 cut(s)	268, 349
NlaIV	GGNNCC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	349
NspV	TTCGAA	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	335
PciI	ACATGT	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	71, 122
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	327
PscI	ACATGT	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	45, 277
Psp6I	CCWGG	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SacI	GAGCTC	2 cut(s)	45, 277
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	2 cut(s)	19, 191
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	2 cut(s)	60, 215
SduI	GDGCHC	2 cut(s)	45, 277
SetI	ASST	8 cut(s)	30, 45, 142, 277, 285, 306, 327, 363
SfuI	TTCGAA	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	240
SspI	AATATT	1 cut(s)	371
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	45, 277
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	58, 213
StyI	CCWWGG	3 cut(s)	66, 159, 336
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	71, 122
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	43
TseI	GCWGC	1 cut(s)	325
TspRI	CASTG	1 cut(s)	43
Vha464I	CTTAAG	1 cut(s)	329
XceI	RCATGY	1 cut(s)	349
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.