Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001518

Physical Location & Seq

Genomic Coordinates Reverse (-)

8180646 .. 8182095

Gene Structure 1450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGCGTACGAGAAAGTCAACGAGCTTAACCTTAAGGACACAGAGCTATGTCTTGGATTACCCGGAAGAACAGAGAAGATCAAAGAAGAACAAGAGGTTTCTTGCGTTAAAAGTAACAACAAGCGTCTATTTGAGGAAACTCGTGATGAAGAAGAATCTACACCTCCTACCAAAACTCAAATCGTTGGTTGGCCACCAGTGAGATCTTCCCGTAAGAACAACAACAGTGTGAGCTACGTGAAAGTGAGTATGGACGGAGCTCCTTACCTTCGCAAGATCGATCTCAAGACATACAAAAACTACCCCGAGCTTCTCAAAGCGTTAGAGAATATGTTCAAAGTCATGATTGGTGAATATTGTGAGAGAGAAGGATACAAAGGATCTGGATTTGTACCAACATACGAAGATAAAGATGGTGACTGGATGTTGGTTGGTGATGTTCCATGGGACATGTTCTCTTCTTCTTGTAAGAGACTCAGAATCATGAAGGGATCCGACGCTCCTGCTCTAGACTCTTCCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

174

Amino Acids

19.91

Weight (kDa)

5.46

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	81 - 257	1.1e-45	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001518)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04240 AT1G04240 AT3G23030 AT3G23030 AT4G14560 AT5G43700
fragaria_vesca	FvH4_2g22530 FvH4_4g02260 FvH4_4g02260 FvH4_6g02870
malus_domestica	MD04G1225000.v1.1 MD05G1205900.v1.1 MD10G1193000.v1.1 MD12G1241700.v1.1 MD13G1204700.v1.1 MD16G1206500.v1.1
prunus_persica	Prupe.1G027500_v2.0.a1 Prupe.6G343700_v2.0.a1 Prupe.8G232400_v2.0.a1
pyrus_communis	pycom05g19210 pycom10g16650 pycom12g22120 pycom13g17750
rosa_chinensis	RchiOBHm_Chr3g0451081 RchiOBHm_Chr4g0389611 RchiOBHm_Chr6g0289581
rosa_laevigata	RLG00000009968 RLG00000012291 RLG00000025693
rosa_multiflora	Rmu_sc0001527.1_g000062 Rmu_sc0022645.1_g000001 Rmu_ssc0000235.1_g000001 Rmu_ssc0000478.1_g000011
rosa_roxburghii	Rroxscaffold_5G00335570 Rroxscaffold_6G00428550 Rroxscaffold_7G00177840
rosa_rugosa	Rorug02G0631100 Rorug03G0324200 Rorug06G0204800
rosa_samantha	Rh3AG034000 Rh3BG034300 Rh3CG033000 Rh4AG028700 Rh4CG030900 Rh4DG022500 Rh6AG316400 Rh6BG322800 Rh6CG329300
rosa_wichuraiana	Rw3G002460 Rw4G002150 Rw6G027280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	388, 486, 499
AcoI	YGGCCR	1 cut(s)	191
AfaI	GTAC	2 cut(s)	8, 393
AflII	CTTAAG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	450
AgsI	TTSAA	1 cut(s)	337
AluBI	AGCT	5 cut(s)	25, 46, 234, 260, 310
AluI	AGCT	5 cut(s)	25, 46, 234, 260, 310
Alw21I	GWGCWC	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	3 cut(s)	388, 486, 499
Ama87I	CYCGRG	1 cut(s)	305
AoxI	GGCC	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	362, 428, 446
AvaI	CYCGRG	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	193
BamHI	GGATCC	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	262
BauI	CACGAG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	262
BccI	CCATC	1 cut(s)	407
BcgI	CGANNNNNNTGC	2 cut(s)	485, 519
BciVI	GTATCC	1 cut(s)	365
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	466
BfaI	CTAG	1 cut(s)	509
BfrI	CTTAAG	1 cut(s)	32
BfuI	GTATCC	1 cut(s)	365
BglII	AGATCT	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	238
BsaJI	CCNNGG	1 cut(s)	443
Bse1I	ACTGG	2 cut(s)	197, 425
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	490
BseNI	ACTGG	2 cut(s)	197, 425
BshFI	GGCC	1 cut(s)	193
BshVI	ATCGAT	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	305
BsiSI	CCGG	1 cut(s)	63
BsiWI	CGTACG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	193
BsoBI	CYCGRG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
Bsp19I	CCATGG	1 cut(s)	443
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	489
BspDI	ATCGAT	1 cut(s)	279
BspHI	TCATGA	2 cut(s)	342, 483
BspLI	GGNNCC	1 cut(s)	493
BspPI	GGATC	3 cut(s)	388, 486, 499
BspTI	CTTAAG	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	197, 425
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
BssSI	CACGAG	1 cut(s)	141
BssT1I	CCWWGG	1 cut(s)	443
Bst2BI	CACGAG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	463, 520
BstAFI	CTTAAG	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	476
BstDSI	CCRYGG	1 cut(s)	443
BstF5I	GGATG	1 cut(s)	429
BstKTI	GATC	6 cut(s)	81, 206, 279, 283, 383, 494
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	61
BstX2I	RGATCY	3 cut(s)	203, 380, 491
BstYI	RGATCY	3 cut(s)	203, 380, 491
Bsu15I	ATCGAT	1 cut(s)	279
BsuI	GTATCC	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	443
BtsCI	GGATG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	204, 232
CciI	TCATGA	2 cut(s)	342, 483
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	2 cut(s)	113, 506
Csp6I	GTAC	2 cut(s)	7, 392
CviAII	CATG	4 cut(s)	343, 444, 451, 484
CviJI	RGCY	6 cut(s)	25, 46, 193, 234, 260, 310
CviKI_1	RGCY	6 cut(s)	25, 46, 193, 234, 260, 310
CviQI	GTAC	2 cut(s)	7, 392
DdeI	CTNAG	1 cut(s)	476
DpnI	GATC	6 cut(s)	80, 205, 278, 282, 382, 493
DpnII	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	463, 520
EarI	CTCTTC	2 cut(s)	463, 520
Ecl136II	GAGCTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	262
Eco53kI	GAGCTC	1 cut(s)	260
Eco88I	CYCGRG	1 cut(s)	305
EcoICRI	GAGCTC	1 cut(s)	260
EcoT14I	CCWWGG	1 cut(s)	443
EcoT38I	GRGCYC	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	4 cut(s)	346, 447, 454, 487
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	4 cut(s)	342, 443, 450, 483
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	262
FspBI	CTAG	1 cut(s)	509
HaeIII	GGCC	1 cut(s)	193
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	2 cut(s)	113, 506
Hin1II	CATG	4 cut(s)	346, 447, 454, 487
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	4 cut(s)	155, 474, 480, 512
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	3 cut(s)	362, 428, 446
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	479, 496
Hpy188III	TCNNGA	6 cut(s)	143, 286, 343, 384, 484, 509
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	278, 362, 481
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	346, 447, 454, 487
Kzo9I	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
LmnI	GCTCC	3 cut(s)	257, 265, 505
LpnPI	CCDG	5 cut(s)	76, 210, 369, 406, 516
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	113, 416
MalI	GATC	6 cut(s)	80, 205, 278, 282, 382, 493
MboI	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
MflI	RGATCY	3 cut(s)	203, 380, 491
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	2 cut(s)	468, 506
MmeI	TCCRAC	1 cut(s)	519
MnlI	CCTC	3 cut(s)	88, 127, 174
Mox20I	TGGCCA	1 cut(s)	193
MroXI	GAANNNNTTC	1 cut(s)	332
MscI	TGGCCA	1 cut(s)	193
MseI	TTAA	3 cut(s)	27, 33, 108
Msp20I	TGGCCA	1 cut(s)	193
MspCI	CTTAAG	1 cut(s)	32
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	63
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
NlaIII	CATG	4 cut(s)	346, 447, 454, 487
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	454
PagI	TCATGA	2 cut(s)	342, 483
PciI	ACATGT	1 cut(s)	450
PdmI	GAANNNNTTC	1 cut(s)	332
PfeI	GAWTC	2 cut(s)	155, 480
Pfl23II	CGTACG	1 cut(s)	6
PleI	GAGTC	2 cut(s)	468, 506
PpsI	GAGTC	2 cut(s)	468, 506
Ppu21I	YACGTR	1 cut(s)	238
PscI	ACATGT	1 cut(s)	450
Psp124BI	GAGCTC	1 cut(s)	262
PspLI	CGTACG	1 cut(s)	6
PspN4I	GGNNCC	1 cut(s)	493
PsuI	RGATCY	3 cut(s)	203, 380, 491
RsaI	GTAC	2 cut(s)	8, 393
RsaNI	GTAC	2 cut(s)	7, 392
SacI	GAGCTC	1 cut(s)	262
SaqAI	TTAA	3 cut(s)	27, 33, 108
Sau3AI	GATC	6 cut(s)	78, 203, 276, 280, 380, 491
SchI	GAGTC	2 cut(s)	468, 506
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	262
SmlI	CTYRAG	2 cut(s)	32, 284
SmoI	CTYRAG	2 cut(s)	32, 284
SspI	AATATT	1 cut(s)	356
SspMI	CTAG	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	279
TfiI	GAWTC	2 cut(s)	155, 480
Tru1I	TTAA	3 cut(s)	27, 33, 108
Tru9I	TTAA	3 cut(s)	27, 33, 108
TscAI	CASTG	2 cut(s)	204, 232
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	162, 500
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	2 cut(s)	204, 232
Vha464I	CTTAAG	1 cut(s)	32
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	454
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.