Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000851

Physical Location & Seq

Genomic Coordinates Forward (+)

2120991 .. 2123801

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCACTCTCGCAGTGGAAGGAAGCTATACTCGAAGGGATTTTCATGGAGATTGAGGATGGTATTGTGGAAGAGAAGAATCTCGAGCGATTAGAGAATCTTGTGGAGATTTTACACAAAGAAGGTTCTAAAGTACCCAAATCAGTCACGGAAGCGTATTGTAAAGTAGCTGTGGAGTGCACAGTGAAGTGTCTCGCTTATGAGAAAGATGCAAAAAAGGCTTACACCGAAGCAATCAAAACGATATGGCTCGGTAGGATTATGCCTTTATGCGATAAGGTTAGTTGTTTGGTTACTCTTGACCTCTTGAAATGCTGTCGAAGATTATGGAAGGCCCACACTGACGACAAGGCTTGTAAGACACTGATGGATGAAGATACAAGAGACAAAGCTTTGGTTTGTTTGAGGAAGGTTGTTTTAGATTTGAATCCCAATCTTGTTTTAGAGAATCTCAACATGGATGAATCGGATGAGATTGAATCTAGTGAAGAATCTGAAGAGACAGAATCAATGGTTGAAGCAAGAGAGGGCGTGGGTAATCAGAACAGTCAGGCGTCTGAAGCTATGGAAGAAGACGACCAAGAGAGCCTCTTAGATACTGAACTGGAAAGACCTACTTCTGGAGGGTCAAAAGCTGTATATGTACCCAGTCAATTCAATCCCATTCCATCTGCAGTTGTTGACAGAGCGCTCAGAAAGCTGAGAGCTAGTAAAATCGAGCTAATGAAAGCTTTAGAAAAAGGAAGACCTTCAAATTTAAACAATGAGACGATTACAGAACAAGAAAACGATGTTGCTAATCCTTCTGCAACAAACGCTGCACCAAGGCCTAGCTTGATGGAGCCACGTAGCACAGCACACACTTATGAATGGAATGACTCCATTGATGATTCAGATGGAGAAATGGGCGATGACATTGAAAGGATTAATAAATCAAAACGTAAAAGAATTGTCGTGTCTCCTTTGAAAAGAAACCGATGTTCAGAAGGTGCTAGAAGGCCAAAACTTCCTTGGAGTACTGCAGAAACGCTGGCCGTACTCAAAGGCTATGAAAAGTATGGTGCAAACTGGAAACGGATCAAAGATGAGAATCCAGTTCTAGTGCGCAGAACTAATGGTGATATTAAAGATAAATTTCGAGTTGAGATGAGACGTGAAGAGCGCCGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DAO Myb_DNA-bind_6 Myb_DNA-binding

Protein Analysis

390

Amino Acids

44.34

Weight (kDa)

5.28

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000851)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06910 AT1G15720 AT5G58340 AT5G58340
fragaria_vesca	FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_3g40451 FvH4_5g00450 FvH4_5g00450 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240 FvH4_5g27240
malus_domestica	MD03G1052200.v1.1 MD10G1106900.v1.1 MD11G1054300.v1.1
prunus_persica	Prupe.6G041700_v2.0.a1
pyrus_communis	pycom03g04150 pycom11g04410
rosa_chinensis	RchiOBHm_Chr5g0000441 RchiOBHm_Chr5g0073101 RchiOBHm_Chr7g0218431 RchiOBHm_Chr7g0221531 RchiOBHm_Chr7g0221541
rosa_laevigata	RLG00000002155 RLG00000002374 RLG00000030867 RLG00000036363
rosa_multiflora	Rmu_co8212148.1_g000001 Rmu_co8273167.1_g000001 Rmu_sc0001680.1_g000002 Rmu_sc0003949.1_g000004 Rmu_sc0005592.1_g000024 Rmu_sc0005994.1_g000013 Rmu_sc0029255.1_g000001 Rmu_sc0029256.1_g000001 Rmu_ssc0000385.1_g000016
rosa_roxburghii	Rroxscaffold_1G00008100 Rroxscaffold_1G00008150 Rroxscaffold_1G00075720 Rroxscaffold_3G00240990 Rroxscaffold_5G00361570
rosa_rugosa	Rorug04G0383600.1 Rorug04G0383700 Rorug05G0421100 Rorug07G0177000
rosa_samantha	Rh5AG003600 Rh5AG478100 Rh5BG004800 Rh5BG498800 Rh5CG003900 Rh5CG522000 Rh5DG003700 Rh5DG510900 Rh7AG318400 Rh7BG310300 Rh7CG335200 Rh7CG335300 Rh7DG317400
rosa_wichuraiana	Rw5G000360 Rw5G044400 Rw7G027060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1106
AclWI	GGATC	1 cut(s)	1085
AcoI	YGGCCR	1 cut(s)	1032
AcsI	RAATTY	2 cut(s)	754, 1133
AcuI	CTGAAG	2 cut(s)	516, 579
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	4 cut(s)	135, 645, 1018, 1038
AfeI	AGCGCT	1 cut(s)	690
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	8 cut(s)	310, 427, 479, 518, 658, 753, 920, 967
AjiI	CACGTC	1 cut(s)	1154
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	6 cut(s)	197, 378, 494, 761, 963, 1144
Alw44I	GTGCAC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	1085
Ama87I	CYCGRG	1 cut(s)	83
Aor51HI	AGCGCT	1 cut(s)	690
AoxI	GGCC	4 cut(s)	333, 827, 998, 1032
ApaLI	GTGCAC	1 cut(s)	178
ApeKI	GCWGC	1 cut(s)	818
ApoI	RAATTY	2 cut(s)	754, 1133
AseI	ATTAAT	1 cut(s)	927
Asp700I	GAANNNNTTC	1 cut(s)	748
AspLEI	GCGC	3 cut(s)	691, 1107, 1164
AspS9I	GGNCC	1 cut(s)	334
AsuHPI	GGTGA	1 cut(s)	1130
AvaI	CYCGRG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	579, 751
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	805
BccI	CCATC	5 cut(s)	53, 361, 676, 832, 890
BceAI	ACGGC	2 cut(s)	1019, 1149
BcoDI	GTCTC	6 cut(s)	197, 378, 494, 761, 963, 1144
BfaI	CTAG	5 cut(s)	483, 708, 831, 993, 1100
BfmI	CTRYAG	2 cut(s)	672, 1020
BfoI	RGCGCY	2 cut(s)	692, 1165
BisI	GCNGC	1 cut(s)	819
BlsI	GCNGC	1 cut(s)	820
BmcAI	AGTACT	1 cut(s)	1018
BmeT110I	CYCGRG	1 cut(s)	83
BmgBI	CACGTC	1 cut(s)	1154
BmgT120I	GGNCC	1 cut(s)	334
BmiI	GGNNCC	1 cut(s)	843
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	642
BpiI	GAAGAC	2 cut(s)	579, 751
BpmI	CTGGAG	1 cut(s)	642
BsaAI	YACGTR	1 cut(s)	848
BsaBI	GATNNNNATC	2 cut(s)	426, 1089
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	824, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	4 cut(s)	609, 648, 1073, 1094
Bse8I	GATNNNNATC	2 cut(s)	426, 1089
BseDI	CCNNGG	2 cut(s)	824, 1010
BseGI	GGATG	4 cut(s)	64, 376, 466, 475
BseJI	GATNNNNATC	2 cut(s)	426, 1089
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMII	CTCAG	2 cut(s)	692, 706
BseNI	ACTGG	4 cut(s)	609, 648, 1073, 1094
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	804
BshFI	GGCC	4 cut(s)	335, 829, 1000, 1034
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	6 cut(s)	197, 378, 494, 761, 963, 1144
BsmBI	CGTCTC	2 cut(s)	761, 1144
BsnI	GGCC	4 cut(s)	335, 829, 1000, 1034
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	1077
BspANI	GGCC	4 cut(s)	335, 829, 1000, 1034
BspCNI	CTCAG	2 cut(s)	693, 705
BspLI	GGNNCC	1 cut(s)	843
BspMAI	CTGCAG	2 cut(s)	676, 1024
BspPI	GGATC	1 cut(s)	1085
BspQI	GCTCTTC	1 cut(s)	1152
BsrI	ACTGG	4 cut(s)	609, 648, 1073, 1094
BssECI	CCNNGG	2 cut(s)	824, 1010
BssMI	GATC	1 cut(s)	1077
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	2 cut(s)	824, 1010
Bst4CI	ACNGT	2 cut(s)	184, 548
Bst6I	CTCTTC	3 cut(s)	66, 492, 1152
BstACI	GRCGYC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	1 cut(s)	1032
BstDEI	CTNAG	3 cut(s)	592, 692, 701
BstF5I	GGATG	4 cut(s)	64, 376, 466, 475
BstH2I	RGCGCY	2 cut(s)	692, 1165
BstHHI	GCGC	3 cut(s)	691, 1107, 1164
BstKTI	GATC	1 cut(s)	1080
BstMAI	GTCTC	6 cut(s)	197, 378, 494, 761, 963, 1144
BstMBI	GATC	1 cut(s)	1077
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 560, 697, 815
BstSFI	CTRYAG	2 cut(s)	672, 1020
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	805
BstV2I	GAAGAC	2 cut(s)	579, 751
BsuRI	GGCC	4 cut(s)	335, 829, 1000, 1034
BtgZI	GCGATG	1 cut(s)	924
BtrI	CACGTC	1 cut(s)	1154
BtsCI	GGATG	4 cut(s)	64, 376, 466, 475
BtsI	GCAGTG	1 cut(s)	20
BtsIMutI	CAGTG	4 cut(s)	20, 189, 339, 362
Cac8I	GCNNGC	1 cut(s)	1032
CfoI	GCGC	3 cut(s)	691, 1107, 1164
Cfr13I	GGNCC	1 cut(s)	334
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	134, 644, 1017, 1037
CviAII	CATG	2 cut(s)	46, 457
CviQI	GTAC	4 cut(s)	134, 644, 1017, 1037
DdeI	CTNAG	3 cut(s)	592, 692, 701
DpnI	GATC	1 cut(s)	1079
DpnII	GATC	1 cut(s)	1077
DraI	TTTAAA	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	1032
Eam1104I	CTCTTC	3 cut(s)	66, 492, 1152
EarI	CTCTTC	3 cut(s)	66, 492, 1152
Eco130I	CCWWGG	2 cut(s)	824, 1010
Eco147I	AGGCCT	1 cut(s)	829
Eco47III	AGCGCT	1 cut(s)	690
Eco57I	CTGAAG	2 cut(s)	516, 579
Eco88I	CYCGRG	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	824, 1010
ErhI	CCWWGG	2 cut(s)	824, 1010
Esp3I	CGTCTC	2 cut(s)	761, 1144
FaeI	CATG	2 cut(s)	49, 460
FalI	AAGNNNNNCTT	2 cut(s)	601, 633
FatI	CATG	2 cut(s)	45, 456
Fnu4HI	GCNGC	1 cut(s)	819
FokI	GGATG	4 cut(s)	71, 383, 473, 482
Fsp4HI	GCNGC	1 cut(s)	819
FspBI	CTAG	5 cut(s)	483, 708, 831, 993, 1100
FspI	TGCGCA	1 cut(s)	1106
GlaI	GCGC	3 cut(s)	690, 1106, 1163
GluI	GCNGC	1 cut(s)	819
GsuI	CTGGAG	1 cut(s)	642
HaeII	RGCGCY	2 cut(s)	692, 1165
HaeIII	GGCC	4 cut(s)	335, 829, 1000, 1034
HgaI	GACGC	1 cut(s)	543
HhaI	GCGC	3 cut(s)	691, 1107, 1164
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	2 cut(s)	49, 460
Hin6I	GCGC	3 cut(s)	689, 1105, 1162
HinP1I	GCGC	3 cut(s)	689, 1105, 1162
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HindIII	AAGCTT	2 cut(s)	390, 729
HphI	GGTGA	1 cut(s)	1130
Hpy166II	GTNNAC	2 cut(s)	180, 682
Hpy188I	TCNGA	7 cut(s)	469, 496, 543, 559, 695, 895, 985
Hpy188III	TCNNGA	4 cut(s)	83, 299, 307, 621
Hpy8I	GTNNAC	2 cut(s)	180, 682
HpyAV	CCTTC	9 cut(s)	13, 29, 116, 325, 403, 759, 813, 980, 990
HpyCH4III	ACNGT	2 cut(s)	184, 548
HpyCH4IV	ACGT	3 cut(s)	847, 940, 1153
HpyCH4V	TGCA	7 cut(s)	180, 212, 674, 809, 821, 1022, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 560, 697, 815
HpyF3I	CTNAG	3 cut(s)	592, 692, 701
HpySE526I	ACGT	3 cut(s)	847, 940, 1153
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	2 cut(s)	49, 460
HspAI	GCGC	3 cut(s)	689, 1105, 1162
Kzo9I	GATC	1 cut(s)	1077
LguI	GCTCTTC	1 cut(s)	1152
LmnI	GCTCC	1 cut(s)	841
LpnPI	CCDG	7 cut(s)	536, 590, 606, 661, 1016, 1054, 1107
Lsp1109I	GCAGC	1 cut(s)	805
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	5 cut(s)	483, 708, 831, 993, 1100
MaeII	ACGT	3 cut(s)	847, 940, 1153
MaeIII	GTNAC	2 cut(s)	145, 292
MalI	GATC	1 cut(s)	1079
MboI	GATC	1 cut(s)	1077
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	4 cut(s)	653, 754, 948, 1133
MlyI	GAGTC	1 cut(s)	872
MnlI	CCTC	6 cut(s)	49, 314, 399, 520, 599, 617
MroXI	GAANNNNTTC	1 cut(s)	748
MseI	TTAA	3 cut(s)	758, 927, 1125
MslI	CAYNNNNRTG	1 cut(s)	864
MwoI	GCNNNNNNNGC	4 cut(s)	218, 560, 697, 815
NdeII	GATC	1 cut(s)	1077
NlaIII	CATG	2 cut(s)	49, 460
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	1106
PaeR7I	CTCGAG	1 cut(s)	83
PceI	AGGCCT	1 cut(s)	829
PciSI	GCTCTTC	1 cut(s)	1152
PdmI	GAANNNNTTC	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	820
PleI	GAGTC	1 cut(s)	872
PpsI	GAGTC	1 cut(s)	872
Ppu21I	YACGTR	1 cut(s)	848
PshBI	ATTAAT	1 cut(s)	927
PspN4I	GGNNCC	1 cut(s)	843
PspPI	GGNCC	1 cut(s)	334
PstI	CTGCAG	2 cut(s)	676, 1024
RsaI	GTAC	4 cut(s)	135, 645, 1018, 1038
RsaNI	GTAC	4 cut(s)	134, 644, 1017, 1037
RseI	CAYNNNNRTG	1 cut(s)	864
SapI	GCTCTTC	1 cut(s)	1152
SaqAI	TTAA	3 cut(s)	758, 927, 1125
SatI	GCNGC	1 cut(s)	819
Sau3AI	GATC	1 cut(s)	1077
Sau96I	GGNCC	1 cut(s)	334
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	1 cut(s)	872
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	2 cut(s)	672, 1020
Sfr274I	CTCGAG	1 cut(s)	83
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	653, 754, 948, 1133
SseBI	AGGCCT	1 cut(s)	829
SspMI	CTAG	5 cut(s)	483, 708, 831, 993, 1100
StuI	AGGCCT	1 cut(s)	829
StyI	CCWWGG	2 cut(s)	824, 1010
TaaI	ACNGT	2 cut(s)	184, 548
TaiI	ACGT	3 cut(s)	850, 943, 1156
TaqI	TCGA	5 cut(s)	33, 84, 319, 717, 1138
TasI	AATT	4 cut(s)	653, 754, 948, 1133
TatI	WGTACW	1 cut(s)	1016
Tru1I	TTAA	3 cut(s)	758, 927, 1125
Tru9I	TTAA	3 cut(s)	758, 927, 1125
TscAI	CASTG	4 cut(s)	20, 189, 346, 369
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	818
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	6 cut(s)	34, 387, 477, 740, 882, 1065
TspGWI	ACGGA	2 cut(s)	164, 1090
TspRI	CASTG	4 cut(s)	20, 189, 346, 369
VneI	GTGCAC	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	754, 1133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1008
XhoI	CTCGAG	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	748
XspI	CTAG	5 cut(s)	483, 708, 831, 993, 1100
ZrmI	AGTACT	1 cut(s)	1018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.