Rh7CG335200
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000851
Physical Location & Seq
Forward (+)
37319479 .. 37320720
1242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG335200.1

Sequence Viewer

Length: 1242 bp
ATGGACTTAGACGTCGACATTTCGCGGTGGGTCCTGGAGTTTCTCCTCCGTGACCGCCACAACGAGACCATCGCCAAGCGACTCCTTGCCGTCGCGCCGCTCCCGAACCGCCACGACTGGCGGTTGAAGAAGACCGTCCTCCTCCGAACAATCGAGTCTGCAATCTACGACGACGCTTCAGTCACCGAAGCGATCCTCGAAGCCCTGGAGTCCATCGAGGCTCTGGACCGCGGCCAAGGGTTTCAGACCACGGAGGCCATGAGGGCGGCGTACTGCGCCGTCGCGACGGAGTGCACGGTCAAATTCTTGGTTTGCTTCGGACGGAAGTACATTGAGGCTGTGGATCGGATTTGGAGAGGTAGGGTTAGGGTTTTGGAGGAGAGTGAGGGGAGCGAGCTGGTTTCGGCGGAGTTGAAAGAGAGAAAATATGAGGTGGAGGCTGCGATTTGGGATAGGAATGTGTCAAAAAAGCTAGCGAGGATGAATACTAGAAATGATGCGCTGAGATTGGTTGGGGAGTATGTGGAGGAAGCTTGGGCTGTGATTGGTCCTCCTTTTCTTAATTGGGCCGTTAGATTTCATATGGTTAAGGAAAGTTTAGGTGAGGGTGATGGTAATGTAGGTGATGGGTGTGGAAAGGAGGTTGGAATGGTGAATGGGAATGAACTGGAGGTGCTGGTAGCAAATGGGGCTGATTTGGGTGATGGTTCCAAATTGGAGGTCAATGGGGCTAATGAGGGTGATGGGTCTAAACCGGAGGTGCAAATAGAGAGTGATACTAAGGTCGGTCATGGGTCTGAATTGGTAATTTGGACTGGGGTGGAGGTGCCATTGACAAAAGGGGCTGATTTGGGTGAGTTGAATGGGCAAAGGGAAAATGGGGCTAATGTTAGTGATGGGTCTGGAGTAAAGGCGCGAAGGGTGAATGGAGCTAATGTTGGTGGTGATAGGTCTAAATGGGAGGCGCGGCAAGTGGAAAATGATACTAATGTGGGTGATGTGACTGTGGCTTTTTCCAAGTTTGGGTCTCTGTTGGGTTACCATTCTATGGACGGTGTTTTGCGGGTAGTGGGGGAAGGGAGGTCACCGCTTAATGTGAACTGTGGTGTCCTGAGTTTTGAACCTGCAAGAAAAGAGATAGGTATTCTCTTTTTCAATAGCAGAGAGGGATATTTCAGTGACATCAGTTTCTGTATTGTTGAGAGGGCGCTCTGTATTGGTTTATTCTGTGCTGTTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO Myb_DNA-binding

Protein Analysis

413

Amino Acids

45.26

Weight (kDa)

5.0

Isoelectric Point (pI)

25.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 11, 179
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 1132
AccB1I GGYRCC 1 cut(s) 826
AccB7I CCANNNNNTGG 1 cut(s) 1048
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 15
AccII CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
AclWI GGATC 2 cut(s) 187, 351
AcoI YGGCCR 1 cut(s) 232
AcsI RAATTY 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 2 cut(s) 272, 329
AfiI CCNNNNNNNGG 2 cut(s) 1023, 1048
AgsI TTSAA 5 cut(s) 127, 415, 862, 1121, 1156
AjnI CCWGG 2 cut(s) 33, 204
AluBI AGCT 4 cut(s) 397, 472, 533, 932
AluI AGCT 4 cut(s) 397, 472, 533, 932
Alw21I GWGCWC 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 59, 1032
Alw44I GTGCAC 1 cut(s) 292
AlwI GGATC 2 cut(s) 187, 351
AlwNI CAGNNNCTG 1 cut(s) 1191
AoxI GGCC 3 cut(s) 232, 255, 567
ApaLI GTGCAC 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 302
ArsI GACNNNNNNTTYG 2 cut(s) 705, 737
AspLEI GCGC 6 cut(s) 97, 278, 502, 916, 967, 1210
AspS9I GGNCC 4 cut(s) 31, 226, 548, 567
AsuNHI GCTAGC 1 cut(s) 472
AvaII GGWCC 3 cut(s) 31, 226, 548
BaeGI GKGCMC 1 cut(s) 296
BaeI ACNNNNGTAYC 4 cut(s) 768, 801, 975, 1008
BanI GGYRCC 1 cut(s) 826
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 296
BbvI GCAGC 1 cut(s) 427
BccI CCATC 7 cut(s) 77, 221, 605, 620, 698, 737, 890
BceAI ACGGC 3 cut(s) 74, 263, 554
BciT130I CCWGG 2 cut(s) 35, 206
BcoDI GTCTC 2 cut(s) 59, 1032
BfaI CTAG 2 cut(s) 473, 489
BfoI RGCGCY 1 cut(s) 1211
BfuAI ACCTGC 1 cut(s) 1132
BglI GCCNNNNNGGC 1 cut(s) 263
BisI GCNGC 5 cut(s) 98, 232, 267, 441, 968
BlsI GCNGC 5 cut(s) 99, 233, 268, 442, 969
Bme1390I CCNGG 2 cut(s) 35, 206
Bme18I GGWCC 3 cut(s) 31, 226, 548
BmgT120I GGNCC 4 cut(s) 31, 226, 548, 567
BmiI GGNNCC 3 cut(s) 32, 709, 828
BmrFI CCNGG 2 cut(s) 35, 206
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 1 cut(s) 487
BmtI GCTAGC 1 cut(s) 476
BmuI ACTGGG 1 cut(s) 825
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 4 cut(s) 56, 227, 689, 924
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 2 cut(s) 59, 1032
BsaJI CCNNGG 4 cut(s) 204, 229, 235, 249
BsaWI WCCGGW 1 cut(s) 754
BsaXI ACNNNNNCTCC 2 cut(s) 921, 951
Bsc4I CCNNNNNNNGG 2 cut(s) 1023, 1048
Bse1I ACTGG 3 cut(s) 122, 672, 820
BseBI CCWGG 2 cut(s) 35, 206
BseDI CCNNGG 4 cut(s) 204, 229, 235, 249
BseGI GGATG 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 1023, 1048
BseMII CTCAG 2 cut(s) 494, 1103
BseNI ACTGG 3 cut(s) 122, 672, 820
BseRI GAGGAG 3 cut(s) 35, 131, 392
BseSI GKGCMC 1 cut(s) 296
BseXI GCAGC 1 cut(s) 427
Bsh1236I CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
BshFI GGCC 3 cut(s) 234, 257, 569
BshNI GGYRCC 1 cut(s) 826
BsiHKAI GWGCWC 1 cut(s) 296
BsiSI CCGG 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 1023, 1048
BsmAI GTCTC 2 cut(s) 59, 1032
BsnI GGCC 3 cut(s) 234, 257, 569
Bso31I GGTCTC 2 cut(s) 59, 1032
Bsp1286I GDGCHC 1 cut(s) 296
Bsp143I GATC 2 cut(s) 192, 343
Bsp68I TCGCGA 1 cut(s) 284
BspANI GGCC 3 cut(s) 234, 257, 569
BspCNI CTCAG 2 cut(s) 495, 1104
BspFNI CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
BspHI TCATGA 1 cut(s) 1238
BspLI GGNNCC 3 cut(s) 32, 709, 828
BspMI ACCTGC 1 cut(s) 1132
BspOI GCTAGC 1 cut(s) 476
BspPI GGATC 2 cut(s) 187, 351
BspT107I GGYRCC 1 cut(s) 826
BspTNI GGTCTC 2 cut(s) 59, 1032
BsrBI CCGCTC 1 cut(s) 100
BsrI ACTGG 3 cut(s) 122, 672, 820
BssECI CCNNGG 4 cut(s) 204, 229, 235, 249
BssMI GATC 2 cut(s) 192, 343
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 235
Bst2UI CCWGG 2 cut(s) 35, 206
Bst4CI ACNGT 5 cut(s) 136, 298, 1006, 1055, 1103
BstACI GRCGYC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 395, 474
BstDEI CTNAG 4 cut(s) 7, 503, 780, 1112
BstDSI CCRYGG 2 cut(s) 229, 249
BstEII GGTNACC 2 cut(s) 1037, 1083
BstF5I GGATG 1 cut(s) 486
BstFNI CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
BstH2I RGCGCY 1 cut(s) 1211
BstHHI GCGC 6 cut(s) 97, 278, 502, 916, 967, 1210
BstKTI GATC 2 cut(s) 195, 346
BstMAI GTCTC 2 cut(s) 59, 1032
BstMBI GATC 2 cut(s) 192, 343
BstMWI GCNNNNNNNGC 3 cut(s) 263, 275, 689
BstNI CCWGG 2 cut(s) 35, 206
BstPI GGTNACC 2 cut(s) 1037, 1083
BstSCI CCNGG 2 cut(s) 33, 204
BstSLI GKGCMC 1 cut(s) 296
BstUI CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 1 cut(s) 137
BsuRI GGCC 3 cut(s) 234, 257, 569
BtgI CCRYGG 2 cut(s) 229, 249
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 1 cut(s) 486
BtsIMutI CAGTG 1 cut(s) 1183
BtuMI TCGCGA 1 cut(s) 284
BveI ACCTGC 1 cut(s) 1132
Cac8I GCNNGC 2 cut(s) 395, 474
CaiI CAGNNNCTG 1 cut(s) 1191
CciI TCATGA 1 cut(s) 1238
CfoI GCGC 6 cut(s) 97, 278, 502, 916, 967, 1210
Cfr13I GGNCC 4 cut(s) 31, 226, 548, 567
Cfr42I CCGCGG 1 cut(s) 232
CseI GACGC 1 cut(s) 182
Csp6I GTAC 2 cut(s) 271, 328
CviAII CATG 3 cut(s) 259, 791, 1239
CviQI GTAC 2 cut(s) 271, 328
DdeI CTNAG 4 cut(s) 7, 503, 780, 1112
DpnI GATC 2 cut(s) 194, 345
DpnII GATC 2 cut(s) 192, 343
DrdI GACNNNNNNGTC 2 cut(s) 11, 179
DseDI GACNNNNNNGTC 2 cut(s) 11, 179
EaeI YGGCCR 1 cut(s) 232
EciI GGCGGA 1 cut(s) 422
Eco130I CCWWGG 1 cut(s) 235
Eco31I GGTCTC 2 cut(s) 59, 1032
Eco47I GGWCC 3 cut(s) 31, 226, 548
Eco57I CTGAAG 1 cut(s) 162
Eco91I GGTNACC 2 cut(s) 1037, 1083
EcoO109I RGGNCCY 1 cut(s) 31
EcoO65I GGTNACC 2 cut(s) 1037, 1083
EcoRII CCWGG 2 cut(s) 33, 204
EcoT14I CCWWGG 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 3 cut(s) 262, 794, 1242
FaiI YATR 8 cut(s) 260, 429, 522, 582, 584, 792, 1049, 1240
FatI CATG 3 cut(s) 258, 790, 1238
FauI CCCGC 1 cut(s) 1056
FauNDI CATATG 1 cut(s) 582
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 98, 232, 267, 441, 968
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 5 cut(s) 98, 232, 267, 441, 968
FspBI CTAG 2 cut(s) 473, 489
GlaI GCGC 6 cut(s) 96, 277, 501, 915, 966, 1209
GluI GCNGC 5 cut(s) 98, 232, 267, 441, 968
GsuI CTGGAG 4 cut(s) 56, 227, 689, 924
HaeII RGCGCY 1 cut(s) 1211
HaeIII GGCC 3 cut(s) 234, 257, 569
HapII CCGG 1 cut(s) 755
HgaI GACGC 1 cut(s) 182
HhaI GCGC 6 cut(s) 97, 278, 502, 916, 967, 1210
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 262, 794, 1242
Hin6I GCGC 6 cut(s) 95, 276, 500, 914, 965, 1208
HinP1I GCGC 6 cut(s) 95, 276, 500, 914, 965, 1208
HincII GTYRAC 1 cut(s) 16
HindII GTYRAC 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 3 cut(s) 81, 155, 209
HpaII CCGG 1 cut(s) 755
Hpy166II GTNNAC 3 cut(s) 16, 294, 1099
Hpy188I TCNGA 5 cut(s) 146, 246, 320, 348, 799
Hpy188III TCNNGA 6 cut(s) 103, 224, 283, 903, 1111, 1239
Hpy8I GTNNAC 3 cut(s) 16, 294, 1099
Hpy99I CGWCG 6 cut(s) 17, 95, 173, 176, 284, 289
HpyAV CCTTC 2 cut(s) 912, 1070
HpyCH4III ACNGT 5 cut(s) 136, 298, 1006, 1055, 1103
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 4 cut(s) 161, 294, 763, 1127
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 275, 689
HpyF3I CTNAG 4 cut(s) 7, 503, 780, 1112
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 262, 794, 1242
HspAI GCGC 6 cut(s) 95, 276, 500, 914, 965, 1208
KspI CCGCGG 1 cut(s) 232
Kzo9I GATC 2 cut(s) 192, 343
LmnI GCTCC 3 cut(s) 105, 390, 929
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 473, 489
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 6 cut(s) 50, 181, 1000, 1037, 1083, 1178
MalI GATC 2 cut(s) 194, 345
MbiI CCGCTC 1 cut(s) 100
MboI GATC 2 cut(s) 192, 343
MboII GAAGA 2 cut(s) 139, 142
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 5 cut(s) 302, 562, 713, 800, 807
MlyI GAGTC 3 cut(s) 75, 164, 218
MmeI TCCRAC 1 cut(s) 625
MseI TTAA 3 cut(s) 561, 588, 1092
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 2 cut(s) 35, 206
MvaI CCWGG 2 cut(s) 35, 206
MvnI CGCG 6 cut(s) 25, 95, 231, 284, 916, 967
MwoI GCNNNNNNNGC 3 cut(s) 263, 275, 689
NdeI CATATG 1 cut(s) 582
NdeII GATC 2 cut(s) 192, 343
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 3 cut(s) 262, 794, 1242
NlaIV GGNNCC 3 cut(s) 32, 709, 828
NmuCI GTSAC 5 cut(s) 50, 181, 1000, 1083, 1178
NruI TCGCGA 1 cut(s) 284
PagI TCATGA 1 cut(s) 1238
PflMI CCANNNNNTGG 1 cut(s) 1048
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 5 cut(s) 99, 233, 268, 442, 969
PleI GAGTC 3 cut(s) 75, 163, 217
PpsI GAGTC 3 cut(s) 75, 163, 217
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
Psp6I CCWGG 2 cut(s) 33, 204
PspEI GGTNACC 2 cut(s) 1037, 1083
PspGI CCWGG 2 cut(s) 33, 204
PspN4I GGNNCC 3 cut(s) 32, 709, 828
PspPI GGNCC 4 cut(s) 31, 226, 548, 567
PspPPI RGGWCCY 1 cut(s) 31
PstNI CAGNNNCTG 1 cut(s) 1191
RruI TCGCGA 1 cut(s) 284
RsaI GTAC 2 cut(s) 272, 329
RsaNI GTAC 2 cut(s) 271, 328
SacII CCGCGG 1 cut(s) 232
SalI GTCGAC 1 cut(s) 14
SaqAI TTAA 3 cut(s) 561, 588, 1092
SatI GCNGC 5 cut(s) 98, 232, 267, 441, 968
Sau3AI GATC 2 cut(s) 192, 343
Sau96I GGNCC 4 cut(s) 31, 226, 548, 567
SchI GAGTC 3 cut(s) 75, 164, 218
ScrFI CCNGG 2 cut(s) 35, 206
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 1 cut(s) 487
Sfr303I CCGCGG 1 cut(s) 232
SgrBI CCGCGG 1 cut(s) 232
SinI GGWCC 3 cut(s) 31, 226, 548
Sse9I AATT 5 cut(s) 302, 562, 713, 800, 807
SspMI CTAG 2 cut(s) 473, 489
StyD4I CCNGG 2 cut(s) 33, 204
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 5 cut(s) 136, 298, 1006, 1055, 1103
TaiI ACGT 1 cut(s) 15
TaqI TCGA 4 cut(s) 15, 153, 198, 216
TaqII GACCGA 1 cut(s) 776
TasI AATT 5 cut(s) 302, 562, 713, 800, 807
TatI WGTACW 1 cut(s) 327
TauI GCSGC 4 cut(s) 100, 234, 269, 970
Tru1I TTAA 3 cut(s) 561, 588, 1092
Tru9I TTAA 3 cut(s) 561, 588, 1092
TscAI CASTG 1 cut(s) 1183
TseFI GTSAC 5 cut(s) 50, 181, 1000, 1083, 1178
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 5 cut(s) 50, 181, 1000, 1083, 1178
TspDTI ATGAA 4 cut(s) 497, 569, 678, 1227
TspGWI ACGGA 4 cut(s) 38, 266, 302, 337
TspRI CASTG 1 cut(s) 1183
Van91I CCANNNNNTGG 1 cut(s) 1048
VneI GTGCAC 1 cut(s) 292
VpaK11BI GGWCC 3 cut(s) 31, 226, 548
XapI RAATTY 1 cut(s) 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 473, 489
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.